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At least 811 records · Page 45
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

COMPASO : A new halo finder for competitive assignment to spherical overdensities

We describe a new method (compaso) for identifying groups of particles in cosmological N-body simulations. compaso builds upon existing spherical overdensity (SO) algorithms by taking into consideration the tidal radius around a smaller halo before competitively assigning halo membership to the particles. In this way, the compaso finder allows for more effective deblending of haloes in close proximity as well as the formation of new haloes on the outskirts of larger ones. This halo-finding algorithm is used in the abacussummit suite of N-body simulations, designed to meet the cosmological simulation requirements of the Dark Energy Spectroscopic Instrument (DESI) survey. compaso is developed as a highly efficient on-the-fly group finder, which is crucial for enabling good load-balancing between the GPU and CPU and the creation of high-resolution merger trees. In this paper, we describe the halo-finding procedure and its particular implementation in abacus, accompanying it with a qualitative analysis of the finder. We test the robustness of the compaso catalogues before and after applying the cleaning method described in an accompanying paper and demonstrate its effectiveness by comparing it with other validation techniques. We then visualize the haloes and their density profiles, finding that they are well fit by the NFW formalism. Finally, we compare other properties such as radius–mass relationships and two-point correlation functions with that of another widely used halo finder, rockstar.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Diurnal Trends and Meteorological Factors Influencing the Variability of Fluorescent Bioaerosol in Mt. Crested Butte, Colorado During SAIL

Abstract Despite the crucial role of bioaerosol particles (BAP) in our climate system, local ecosystems, and human health, our grasp on their atmospheric interactions is hampered by a lack of high‐resolution and long‐term data, which is essential for understanding their abundance and variability in response to meteorological conditions. To discern these relationships in a high‐altitude mountainous terrain is even less well‐studied. Therefore, we deployed a Wideband Integrated Bioaerosol Sensor (WIBS‐Neo) for three months during the first biologically active season of the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign in summer 2022 on Mt. Crested Butte in Colorado (elevation 3,140 m ASL). Here, we report real‐time fluorescent BAP (FBAP) data collected from 15 June to 13 September 2022, sampled from within the ARM Aerosol Observing System (AOS). To our knowledge, these are the first high altitude (>3,000 m ASL) continuous measurements of FBAP made in North America. During this deployment, we observed on average 21% and as many as 48% (hourly maximum) of particles within the detection size range ( to ) of the WIBS as FBAP. Our analysis presents the diurnal cycles for seven distinct types of FBAP, showing unique patterns and, in some cases, correlations with temperature and solar radiation cycles. Abundance and composition of FBAP varied with relative humidity and precipitation. Precipitation events appeared to both cause emission and removal of FBAP, whereas dust and smoke events had no significant effect, highlighting the critical role of meteorology on FBAP at high altitudes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Deuterium supersaturated surface layer in tungsten: ion energy dependence

Abstract Properties of deuterium (D) supersaturated surface layers (DSSLs) formed in tungsten (W), such as thickness, internal microstructures, and D retention, are experimentally investigated as a function of the incident ion energy, E i . W samples were exposed to D plasmas in the PISCES-A linear plasma device in a range of E i ∼ 45–175 eV, while other plasma exposure parameters were fixed: sample temperature, T s , ∼423 K, ion flux, Γ i , ∼1.2 × 10 21 m −2 s −1 , and fluence, Φ i , ∼3.0 × 10 24 m −2 . High-resolution, cross-sectional, transmission electron microscopy observations confirm that (1) a DSSL forms even at the lowest E i ∼ 45 eV, (2) the DSSL thickness, Δ t DSSL , is found to decrease with decreasing E i from ∼11–12 nm at E i ∼ 175 eV to ∼5–6 nm at ∼45 eV, and to agree with approximately the maximum implantation depth calculated using SDTrimSP, and (3) high-density D nanobubbles with a diameter of ∼1 nm or less exist inside the DSSL, which is deemed to validate a theory-predicted vacancy stabilization process due to trapping of a solute D atom(s). Utilizing a D areal density of ∼4.2 × 10 19 m −2 in the first 14 nm from the surface at E i ∼ 75 eV from nuclear reaction analysis and the measured E i dependence of Δ t DSSL , our previous laser-induced breakdown spectroscopy data is updated: both dynamic and static D retention increase with decreasing E i , and the D/W atomic fraction during plasma exposure reaches ∼0.3 at E i ∼ 45 eV. A possible DSSL formation mechanism is proposed.

Physics↗
DOE OSTI2021

Extreme wind shear events in US offshore wind energy areas and the role of induced stratification

As the offshore wind industry emerges on the US East Coast, a comprehensive understanding of the wind resource – particularly extreme events – is vital to the industry's success. Such understanding has been hindered by a lack of publicly available wind profile observations in offshore wind energy areas. However, the New York State Energy Research and Development Authority recently funded the deployment of two floating lidars within two current lease areas off the coast of New Jersey. These floating lidars provide publicly available wind speed data from 20 to 200 m height with a 20 m vertical resolution. In this study, we leverage a year of these lidar data to quantify and characterize the frequent occurrence of high-wind-shear and low-level-jet events, both of which will have a considerable impact on turbine operation. In designing a detection algorithm for these events, we find that the typical, non-dimensional power-law-based wind shear exponent is insufficient to identify many of these extreme, high-wind-speed events. Rather, we find that the simple vertical gradient of wind speed better captures the events. Based on this detection method, we find that almost 100 independent events occur throughout the year with mean wind speed at 100 m height and wind speed gradient of 16 m s -1 and 0.05 s -1 , respectively. The events have strong seasonal variability, with the highest number of events in summer and the lowest in winter. A detailed analysis reveals that these events are enabled by an induced stable stratification when warmer air from the south flows over the colder mid-Atlantic waters, leading to a positive air–sea temperature difference.

17 WIND ENERGY↗
DOE OSTI2020

Multi-Temporal Predictive Modelling of Sorghum Biomass Using UAV-Based Hyperspectral and LiDAR Data

High-throughput phenotyping using high spatial, spectral, and temporal resolution remote sensing (RS) data has become a critical part of the plant breeding chain focused on reducing the time and cost of the selection process for the “best” genotypes with respect to the trait(s) of interest. In this paper, the potential of accurate and reliable sorghum biomass prediction using visible and near infrared (VNIR) and short-wave infrared (SWIR) hyperspectral data as well as light detection and ranging (LiDAR) data acquired by sensors mounted on UAV platforms is investigated. Predictive models are developed using classical regression-based machine learning methods for nine experiments conducted during the 2017 and 2018 growing seasons at the Agronomy Center for Research and Education (ACRE) at Purdue University, Indiana, USA. The impact of the regression method, data source, timing of RS and field-based biomass reference data acquisition, and the number of samples on the prediction results are investigated. R2 values for end-of-season biomass ranged from 0.64 to 0.89 for different experiments when features from all the data sources were included. Geometry-based features derived from the LiDAR point cloud to characterize plant structure and chemistry-based features extracted from hyperspectral data provided the most accurate predictions. Evaluation of the impact of the time of data acquisition during the growing season on the prediction results indicated that although the most accurate and reliable predictions of final biomass were achieved using remotely sensed data from mid-season to end-of-season, predictions in mid-season provided adequate results to differentiate between promising varieties for selection. The analysis of variance (ANOVA) of the accuracies of the predictive models showed that both the data source and regression method are important factors for a reliable prediction; however, the data source was more important with 69% significance, versus 28% significance for the regression method.

09 BIOMASS FUELS↗
DOE OSTI2020

AI-enabled high-resolution scanning coherent diffraction imaging

Ptychographic imaging is a powerful means of imaging beyond the resolution limits of typical x-ray optics. Capturing recovered images from raw ptychographic data, however, requires the solution of an inverse problem, namely, phase retrieval. Phase retrieval algorithms are computationally expensive, which precludes real-time imaging. In this work, we propose PtychoNN, an approach to solve the ptychography data inversion problem based on a deep convolutional neural network. We demonstrate how the proposed method can be used to predict real-space structure and phase at each scan point solely from the corresponding far-field diffraction data. Our results demonstrate the practical application of machine learning to recover high fidelity amplitude and phase contrast images of a real sample hundreds of times faster than current ptychography reconstruction packages. Furthermore, by overcoming the constraints of iterative model-based methods, we can significantly relax sampling constraints on data acquisition while still producing an excellent image of the sample. Besides drastically accelerating acquisition and analysis, this capability has profound implications for the imaging of dose sensitive, dynamic, and extremely voluminous samples.

47 OTHER INSTRUMENTATION↗
DOE OSTI2020

Pileup mitigation at CMS in 13 TeV data

With increasing instantaneous luminosity at the LHC come additional reconstruction challenges. At high luminosity, many collisions occur simultaneously within one proton-proton bunch crossing. The isolation of an interesting collision from the additional “pileup” collisions is needed for effective physics performance. In the CMS Collaboration, several techniques capable of mitigating the impact of these pileup collisions have been developed. Such methods include charged-hadron subtraction, pileup jet identification, isospin-based neutral particle “δβ” correction, and, most recently, pileup per particle identification. This paper surveys the performance of these techniques for jet and missing transverse momentum reconstruction, as well as muon isolation. The analysis makes use of data corresponding to 35.9 fb−1 collected with the CMS experiment in 2016 at a center-of-mass energy of 13 TeV. The performance of each algorithm is discussed for up to 70 simultaneous collisions per bunch crossing. Significant improvements are found in the identification of pileup jets, the jet energy, mass, and angular resolution, missing transverse momentum resolution, and muon isolation when using pileup per particle identification.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2023

Quantum textures of the many-body wavefunctions in magic-angle graphene

Interactions among electrons create novel many-body quantum phases of matter with wavefunctions that often reflect electronic correlation effects, broken symmetries, and novel collective excitations. A wide range of quantum phases has been discovered in MATBG, including correlated insulating, unconventional superconducting, and magnetic topological phases. The lack of microscopic information, including precise knowledge of possible broken symmetries, has thus far hampered our understanding of MATBG's correlated phases. Here we use high-resolution scanning tunneling microscopy to directly probe the wavefunctions of the correlated phases in MATBG. The squares of the wavefunctions of gapped phases, including those of the correlated insulators, pseudogap, and superconducting phases, show distinct patterns of broken symmetry with a √3 x √3 super-periodicity on the graphene atomic lattice that has a complex spatial dependence on the moiré superlattice scale. We introduce a symmetry-based analysis to describe our measurements of the wavefunctions of MATBG's correlated phases with a set of complex-valued local order parameters. For the correlated insulators in MATBG, at fillings of ±2 electrons per moiré unit cell relative to charge neutrality, we compare the observed quantum textures to those expected for proposed theoretical ground states. In typical MATBG devices, the textures of correlated insulators' wavefunctions closely match those of the theoretically proposed IKS order, while in ultra-low-strain samples our data has local symmetries like those of a T-IVC phase. Here, we also study the wavefunction of MATBG's superconducting state, revealing strong signatures of intervalley coherence that can only be distinguished from those of the insulator with our phase-sensitive measurements.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2021

2D coherence imaging measurements of C 2+ ion temperatures in the divertor of Wendelstein 7-X

For the first time, 2D ion temperature values are derived from coherence imaging spectroscopy (CIS) fringe contrast measurements by taking Zeeman line broadening effects into account during the analysis procedure of a spatial-heterodyne CIS instrument. This allowed 2D images of C 2+ ion temperatures (T i ) across the 3D-shaped island divertor of the Wendelstein 7-X stellarator. Ion temperatures ranging from 10 to 20 eV are observed for the C 2+ impurity species in the region above the divertor targets. During the transition from the attached to the detached plasma state, the C 2+ radiation zone moves from close to the divertor target towards the last closed flux surface. Within this radiation zone, C 2+ temperature does not decrease significantly. Experimentally, the coherence imaging measurements were cross-calibrated at one poloidal cross-section using a high resolution Echelle spectrometer, that shared its sightlines with the coherence imaging diagnostic. The spectra demonstrated that, apart from Doppler broadening, the Zeeman effect significantly contributes to the spectral line broadening and cannot be neglected when analyzing the CIS contrast data for T i extraction in the edge and scrape-off-layer of Wendelstein 7-X (W7-X), due to the relatively low temperatures (T i < 100 eV) and high magnetic fields (B ≈ 2.5 T).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Progenitors and explosion properties of supernova remnants hosting central compact objects: II. A global systematic study with a comparison to nucleosynthesis models

ABSTRACT Core-collapse explosions of massive stars leave behind neutron stars, with a known diversity that includes the ‘Central Compact Objects’ (CCOs). Typified by the neutron star discovered near the centre of the Cas A supernova remnant (SNR), CCOs have been observed to shine only in X-rays. To address their supernova progenitors, we perform a systematic study of SNRs that contain a CCO and display X-ray emission from their shock-heated ejecta. We make use of X-ray data primarily using the Chandra X-ray observatory, complemented with XMM–Newton. This study uses a systematic approach to the analysis of each SNR aimed at addressing the supernova progenitor as well as the explosion properties (energy and ambient density). After fitting for the ejecta abundances estimated from a spatially resolved spectroscopic study, we compare the data to six nucleosynthesis models making predictions on supernova ejecta yields in core-collapse explosions. We find that the explosion models commonly used by the astrophysics community do not match the ejecta yields for any of the SNRs, suggesting additional physics, for example multidimensional explosion models or updated progenitor structures, are required. Overall we find low-mass (≤25 solar masses) progenitors among the massive stars population and low-energy explosions (<1051 ergs). We discuss degeneracies in our model fitting, particularly how altering the explosion energy affects the estimate of the progenitor mass. Our systematic study highlights the need for improving on the theoretical models for nucleosynthesis predictions as well as for sensitive, high-resolution spectroscopy observations to be acquired with next generation X-ray missions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

High-quality Acinetobacter genomes recovered from combat wounds via metagenomic sequencing resemble cultured isolate genomes

The ability to accurately characterize wound pathogens is critical to informing clinical decisions for wound infections with complex treatment requirements. Acinetobacter baumannii is an impactful nosocomial pathogen in combat wounds and civilian hospital-acquired infections. An informed understanding of the phylogenetics and epidemiology of A. baumannii infections in military and civilian environments could guide approaches that improve antibiotic treatment regimens for both military and civilian patients. Whole-genome data for bacterial strains can be difficult to obtain due to challenges in culturing isolates from preserved military specimens. Metagenomic sequencing and assembly create opportunities for genomic analysis of pathogens directly from clinical specimens. The ability to perform comparative analyses between metagenome-derived genomes and culture-derived genomes would support a range of comparative bacterial genomic studies. Wound tissue biopsy and effluent samples from combat injuries were subjected to metagenomic sequencing and assembly. In total, 42 microbial metagenome-assembled genomes (MAGs) were obtained directly from metagenomic sequence data, 36 of which were designated “high” quality. Thirty of these genomes corresponded to Acinetobacter, with 29 mapping specifically to A. baumannii. Other observed genera included Bordetella, Citrobacter, Escherichia, and Pseudomonas. Single-copy and multi-copy orthologs were identified across Acinetobacter MAGs and publicly available isolate genomes derived from military and civilian sources. Both MAG and military isolate genomes were annotated with antimicrobial resistance data, and MAG genomes were statistically comparable to genomes obtained from isolates. Our results highlight the potential of de novo metagenome assembly for enabling high-resolution characterization directly from clinical specimens, thereby improving diagnostic precision, guiding antimicrobial stewardship, and enhancing understanding of pathogen evolution across diverse healthcare and battlefield environments.

Acinetobacter baumannii↗
DOE OSTI2022

High Resolution Photoelectron Spectroscopy of the Acetyl Anion

High-resolution photoelectron spectra of cryogenically cooled acetyl anions (CH 3 CO - ) obtained using slow photoelectron velocity-map imaging are reported. The high resolution of the photoelectron spectrum yields a refined electron affinity of 0.4352 ± 0.0012 eV for the acetyl radical as well as the observation of a new vibronic structure that is assigned based on ab initio calculations. Three vibrational frequencies of the neutral radical are measured to be 1047 ± 3 cm -1 (ν 6 ), 834 ± 2 cm -1 (ν 7 ), and 471 ± 1 cm -1 (ν 8 ). Here this work represents the first experimental measurement of the ν 6 frequency of the neutral. The measured electron affinity is used to calculate a refined value of 1641.35 ± 0.42 kJ mol -1 for the gas-phase acidity of acetaldehyde. Analysis of the photoelectron angular distributions provides insight into the character of the highest occupied molecular orbital of the anion, revealing a molecular orbital with strong d-character. Additionally, details of a new centroiding algorithm based on finite differences, which has the potential to decrease data acquisition times by an order of magnitude at no cost to accuracy, are provided.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Orientational analysis of atomic pair correlations in nanocrystalline indium oxide thin films

The application of grazing-incidence total X-ray scattering (GITXS) for pair distribution function (PDF) analysis using >50 keV X-rays from synchrotron light sources has created new opportunities for structural characterization of supported thin films with high resolution. Compared with grazing-incidence wide-angle X-ray scattering, which is only useful for highly ordered materials, GITXS/PDFs expand such analysis to largely disordered or nanostructured materials by examining the atomic pair correlations dependent on the direction relative to the surface of the supporting substrate. A characterization of nanocrystalline In 2 O 3 -derived thin films is presented here with in-plane-isotropic and out-of-plane-anisotropic orientational ordering of the atomic structure, each synthesized using different techniques. The atomic orientations of such films are known to vary based on the synthetic conditions. Here, an azimuthal orientational analysis of these films using GITXS with a single incident angle is shown to resolve the markedly different orientations of the atomic structures with respect to the planar support and the different degrees of long-range order, and hence, the terminal surface chemistries. It is anticipated that orientational analysis of GITXS/PDF data will offer opportunities to extend structural analyses of thin films by providing a means to qualitatively determine the major atomic orientation within nanocrystalline and, eventually, non-crystalline films.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Assessing complexity and dynamics in epidemics: geographical barriers and facilitators of foot-and-mouth disease dissemination

Introduction: Physical and non-physical processes that occur in nature may influence biological processes, such as dissemination of infectious diseases. However, such processes may be hard to detect when they are complex systems. Because complexity is a dynamic and non-linear interaction among numerous elements and structural levels in which specific effects are not necessarily linked to any one specific element, cause-effect connections are rarely or poorly observed. Methods: To test this hypothesis, the complex and dynamic properties of geo-biological data were explored with high-resolution epidemiological data collected in the 2001 Uruguayan foot-and-mouth disease (FMD) epizootic that mainly affected cattle. County-level data on cases, farm density, road density, river density, and the ratio of road (or river) length/county perimeter were analyzed with an open-ended procedure that identified geographical clustering in the first 11 epidemic weeks. Two questions were asked: (i) do geo-referenced epidemiologic data display complex properties? and (ii) can such properties facilitate or prevent disease dissemination? Results: Emergent patterns were detected when complex data structures were analyzed, which were not observed when variables were assessed individually. Complex properties–including data circularity–were demonstrated. The emergent patterns helped identify 11 counties as ‘disseminators’ or ‘facilitators’ (F) and 264 counties as ‘barriers’ (B) of epidemic spread. In the early epidemic phase, F and B counties differed in terms of road density and FMD case density. Focusing on non-biological, geographical data, a second analysis indicated that complex relationships may identify B-like counties even before epidemics occur. Discussion: Geographical barriers and/or promoters of disease dispersal may precede the introduction of emerging pathogens. If corroborated, the analysis of geo-referenced complexity may support anticipatory epidemiological policies.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Time-sequence Spectroscopy of Epsilon CrA: The 518 nm Mg i Triplet Region Analyzed with Broadening Functions

High-resolution spectroscopic observations of the W UMa-type binary ϵ CrA obtained as a time-monitoring sequence on four full and four partial nights within two weeks have been used to derive orbital elements of the system and discuss the validity of the Lucy model for description of the radial-velocity data. The observations had more extensive temporal coverage and better quality than similar time-sequence observations of the contact binary AW UMa. The two binaries share several physical properties and show very similar deviations from the Lucy model: the primary component is a rapidly rotating star almost unaffected by the presence of the secondary component, while the latter is embedded in a complex gas flow and appears to have its own rotation-velocity field, in contradiction to the model. The spectroscopic mass ratio is found to be larger than the one derived from the light-curve analysis, as in many other W UMa-type binaries, but the discrepancy for ϵ CrA is relatively minor, much smaller than for AW UMa. The presence of the complex velocity flows contradicting the assumption of solid-body rotation suggests a necessity of modification to the Lucy model, possibly along the lines outlined by Stȩpień in his concept of energy transfer between the binary components.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Absolute throughput calibration of multiple spherical crystals for the Orion High-REsolution X-ray spectrometer (OHREX)

We present absolute throughput analysis of several crystals for the Orion High-REsolution X-ray (OHREX) imaging crystal spectrometer using ray tracing and experimental measurements. The OHREX spectrometer is a high-resolution x-ray spectrometer designed to measure spectral line shapes at the Orion laser facility. The spectrometer is fielded with up to two spherical crystals simultaneously covering two independent spectral ranges. Each crystal has a nominal radius of curvature of R = 67.2 cm and is fielded at a nominal Bragg angle of 51.3°. To cover different bands of interest, several different crystals are available, including Ge (111), KAP, and several cuts of quartz, whose resolving power λ/Δλ exceeds 10 000. The calibrated response of the available crystals has previously been reported from measurements at the EBIT-I electron beam ion trap at Lawrence Livermore National Laboratory. Here, we model the absolute throughput of each crystal using ray tracing and verify the results using experimental data for the quartz $(10\bar{1}1)$ crystal.

47 OTHER INSTRUMENTATION↗
DOE OSTI2022

UAV remote sensing imagery - Miscanthus trials 2020 - Energy Farm - UIUC

Aerial imagery utilized as input in the manuscript "Deep convolutional neural networks exploit high spatial and temporal resolution aerial imagery to predict key traits in miscanthus" . Data was collected over M. Sacchariflorus and Sinensis breeding trials at the Energy Farm, UIUC in 2020. Flights were performed using a DJI M600 mounted with a Micasense Rededge multispectral sensor at 20 m altitude around solar noon. Imagery is available as tif file by field trial and date (10). The post-processing of raw images into orthophoto was performed in Agisoft Metashape software. Each crop surface model and multispectral orthophoto was stacked into an unique raster stack by date and uploaded here. Each raster stack includes 6 layers in the following order: Layer 1 = crop surface model, Layer 2 = Blue, Layer 3 = Green, Layer 4 = Red, Layer 5 = Rededge, and Layer 6 = NIR multispectral bands. Msa raster stacks were resampled to 1.67 cm spatial resolution and Msi raster stacks were resampled to 1.41 cm spatial resolution to ease their integration into further analysis. 'MMDDYYYY' is the date of data collection, 'MSA' is M. Sacchariflorus trial, 'MSI' is Miscanthus Sinensis trial, 'CSM' is crop surface model layer, and 'MULTSP' are the five multispectral bands.

bioenergy↗