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At least 811 records · Page 45
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Cluster Sampling Filters for Non-Gaussian Data Assimilation

This paper presents a fully non-Gaussian filter for sequential data assimilation. The filter is named the “cluster sampling filter”, and works by directly sampling the posterior distribution following a Markov Chain Monte-Carlo (MCMC) approach, while the prior distribution is approximated using a Gaussian Mixture Model (GMM). Specifically, a clustering step is introduced after the forecast phase of the filter, and the prior density function is estimated by fitting a GMM to the prior ensemble. Using the data likelihood function, the posterior density is then formulated as a mixture density, and is sampled following an MCMC approach. Four versions of the proposed filter, namely C ℓ MCMC , C ℓ HMC , MC- C ℓ HMC , and MC- C ℓ HMC are presented. C ℓ MCMC uses a Gaussian proposal density to sample the posterior, and C ℓ HMC is an extension to the Hamiltonian Monte-Carlo (HMC) sampling filter. MC- C ℓ MCMC and MC- C ℓ HMC are multi-chain versions of the cluster sampling filters C ℓ MCMC and C ℓ HMC respectively. The multi-chain versions are proposed to guarantee that samples are taken from the vicinities of all probability modes of the formulated posterior. The new methodologies are tested using a simple one-dimensional example, and a quasi-geostrophic (QG) model with double-gyre wind forcing and bi-harmonic friction. Here, numerical results demonstrate the usefulness of using GMMs to relax the Gaussian prior assumption especially in the HMC filtering paradigm.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

Effect of vertical canopy architecture on transpiration, thermoregulation and carbon assimilation

Quantifying the impact of natural and anthropogenic disturbances such as deforestation, forest fires and vegetation thinning among others on net ecosystem—atmosphere exchanges of carbon dioxide, water vapor and heat—is an important aspect in the context of modeling global carbon, water and energy cycles. The absence of canopy architectural variation in horizontal and vertical directions is a major source of uncertainty in current climate models attempting to address these issues. This work demonstrates the importance of considering the vertical distribution of foliage density by coupling a leaf level plant biophysics model with analytical solutions of wind flow and light attenuation in a horizontally homogeneous canopy. It is demonstrated that plant physiological response in terms of carbon assimilation, transpiration and canopy surface temperature can be widely different for two canopies with the same leaf area index (LAI) but different leaf area density distributions, under several conditions of wind speed, light availability, soil moisture availability and atmospheric evaporative demand.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1995

Parallel Climate Data Assimilation PSAS Package Achieves 18 GFLOPs on 512-Node Intel Paragon

Several algorithms were added to the Physical-space Statistical Analysis System (PSAS) from Goddard, which assimilates observational weather data by correcting for different levels of uncertainty about the data and different locations for mobile observation platforms. The new algorithms and use of the 512-node Intel Paragon allowed a hundred-fold decrease in processing time.

weather prediction climate modeling data assimilat↗
NASA NTRS2004

Data assimilation of ground GPG total electron content into a physics-based ionosheric model by use of the Kalman filter

A three-dimensional (3-D) Global Assimilative Ionospheric Model (GAIM) is currently being developed by a joint University of Southern California and Jet Propulsion Laboratory (JPL) team. To estimate the electron density on a global grid, GAIM uses a first-principles ionospheric physics model and the Kalman filter as one of its possible estimation techniques.

ionosphere forecast data assimilation Kalman filte↗
NASA NTRS2014

Hybrid Data Assimilation without Ensemble Filtering

The Global Modeling and Assimilation Office is preparing to upgrade its three-dimensional variational system to a hybrid approach in which the ensemble is generated using a square-root ensemble Kalman filter (EnKF) and the variational problem is solved using the Grid-point Statistical Interpolation system. As in most EnKF applications, we found it necessary to employ a combination of multiplicative and additive inflations, to compensate for sampling and modeling errors, respectively and, to maintain the small-member ensemble solution close to the variational solution; we also found it necessary to re-center the members of the ensemble about the variational analysis. During tuning of the filter we have found re-centering and additive inflation to play a considerably larger role than expected, particularly in a dual-resolution context when the variational analysis is ran at larger resolution than the ensemble. This led us to consider a hybrid strategy in which the members of the ensemble are generated by simply converting the variational analysis to the resolution of the ensemble and applying additive inflation, thus bypassing the EnKF. Comparisons of this, so-called, filter-free hybrid procedure with an EnKF-based hybrid procedure and a control non-hybrid, traditional, scheme show both hybrid strategies to provide equally significant improvement over the control; more interestingly, the filter-free procedure was found to give qualitatively similar results to the EnKF-based procedure.

Kalman Filter↗
NASA NTRS2014

Range-Specific High-Resolution Mesoscale Model Setup: Data Assimilation

Mesoscale weather conditions can have an adverse effect on space launch, landing, and ground processing at the Eastern Range (ER) in Florida and Wallops Flight Facility (WFF) in Virginia. During summer, land-sea interactions across Kennedy Space Center (KSC) and Cape Canaveral Air Force Station (CCAFS) lead to sea breeze front formation, which can spawn deep convection that can hinder operations and endanger personnel and resources. Many other weak locally driven low-level boundaries and their interactions with the sea breeze front and each other can also initiate deep convection in the KSC/CCAFS area. Some of these other boundaries include the Indian River breeze front, Banana River breeze front, outflows from previous convection, horizontal convective rolls, convergence lines from other inland bodies of water such as Lake Okeechobee, the trailing convergence line from convergence of sea breeze fronts due to the shape of Cape Canaveral, frictional convergence lines from the islands in the Bahamas, convergence lines from soil moisture differences, convergence lines from cloud shading, and others. All these subtle weak boundary interactions often make forecasting of operationally important weather very difficult at KSC/CCAFS during the convective season (May-Oct). These convective processes often build quickly, last a short time (60 minutes or less), and occur over small distances, all of which also poses a significant challenge to the local forecasters who are responsible for issuing weather advisories, watches, and warnings. Surface winds during the transition seasons of spring and fall pose the most difficulties for the forecasters at WFF. They also encounter problems forecasting convective activity and temperature during those seasons. Therefore, accurate mesoscale model forecasts are needed to aid in their decision making. Both the ER and WFF would benefit greatly from high-resolution mesoscale model output to better forecast a variety of unique weather phenomena. Global and national scale models cannot properly resolve important local-scale weather features at each location due to their horizontal resolutions being much too coarse. Therefore, a properly tuned model at a high resolution is needed to provide improved capability. This task is a multi-year effort in which the Applied Meteorology Unit (AMU) will tune the Weather Research and Forecasting (WRF) model individually for each range. The goal of the first year, the results of which are in this report, was to tune the WRF model based on the best model resolution and run time while using reasonable computing capabilities. To accomplish this, the ER and WFF supported the tasking of the AMU to perform a number of sensitivity tests in order to determine the best model configuration for operational use at each of the ranges to best predict winds, precipitation, and temperature (Watson 2013). This task is a continuation of that work and will provide a recommended local data assimilation (DA) and numerical forecast model design optimized for the ER and WFF to support space launch activities. The model will be optimized for local weather challenges at both ranges.

Global and national scale models↗
NASA NTRS2016

National Climate Assessment - Land Data Assimilation System (NCA-LDAS) Data at NASA GES DISC

As part of NASA's active participation in the Interagency National Climate Assessment (NCA) program, the Goddard Space Flight Center's Hydrological Sciences Laboratory (HSL) is supporting an Integrated Terrestrial Water Analysis, by using NASA's Land Information System (LIS) and Land Data Assimilation System (LDAS) capabilities. To maximize the benefit of the NCA-LDAS, on completion of planned model runs and uncertainty analysis, NASA will provide open access to all NCA-LDAS components, including input data, output fields, and indicator data, to other NCA-teams and the general public. The NCA-LDAS data will be archived at the NASA GES DISC (Goddard Earth Sciences Data and Information Services Center) and can be accessed via direct ftp, THREDDS, Mirador search and download, and Giovanni visualization and analysis system.

land surface↗
NASA NTRS2017

Documenting Chemical Assimilation in a Basaltic Lava Flow

Lava channels are features seen throughout the inner Solar System, including on Earth, the Moon, and Mars. Flow emplacement is therefore a crucial process in the shaping of planetary surfaces. Many studies have investigated the dynamics of lava flow emplacement, both on Earth and on the Moon [1,2,3] but none have focused on how the compositional and structural characteristics of the substrate over which a flow was emplaced influenced its final flow morphology. Within the length of one flow, it is common for flows to change in morphology, a quality linked to lava rheology (a function of multiple factors including viscosity, temperature, composition, etc.). The relationship between rheology and temperature has been well-studied [4,5,6] but less is understood about the relationship between a pre-flow terrain's chemistry and how the interaction between this flow and the new flow might affect lava rheology and therefore emplacement dynamics. Lava erosion. Through visual observations of active terrestrial flows, lava erosion has been well-documented [i.e. 7,8,9,10]. Lava erosion is the process by which flow composition is altered as the active lava melts and assimilates the pre-flow terrain over which it moves. Though this process has been observed, there is only one instance of where it was been geochemically documented.

assimilation↗
NASA NTRS2017

Similarity Assessment of Land Surface Model Outputs in the North American Land Data Assimilation System

Multimodel ensembles are often used to produce ensemble mean estimates that tend to have increased simulation skill over any individual model output. If multimodel outputs are too similar, an individual LSM would add little additional information to the multimodel ensemble, whereas if the models are too dissimilar, it may be indicative of systematic errors in their formulations or configurations. The article presents a formal similarity assessment of the North American Land Data Assimilation System (NLDAS) multimodel ensemble outputs to assess their utility to the ensemble, using a confirmatory factor analysis. Outputs from four NLDAS Phase 2 models currently running in operations at NOAA/NCEP and four new/ upgraded models that are under consideration for the next phase of NLDAS are employed in this study. The results show that the runoff estimates from the LSMs were most dissimilar whereas the models showed greater similarity for root zone soil moisture, snow water equivalent, and terrestrial water storage. Generally, the NLDAS operational models showed weaker association with the common factor of the ensemble and the newer versions of the LSMs showed stronger association with the common factor, with the model similarity increasing at longer time scales. Trade-offs between the similarity metrics and accuracy measures indicated that the NLDAS operational models demonstrate a larger span in the similarity-accuracy space compared to the new LSMs. The results of the article indicate that simultaneous consideration of model similarity and accuracy at the relevant time scales is necessary in the development of multimodel ensemble.

land surface models↗
NASA NTRS2018

Introduction to Data Assimilation

Atmospheric data assimilation is a class of techniques used for producing descriptions of fields of air temperature, pressure, humidity, wind, etc. on a spatial grid or in terms of a finite functional representation. These are then used to initialize numerical weather forecasts or to analyze the atmosphere for other purposes. The techniques combine past, present, and even future observations in an approximate statistically optimal way. Various types of statistical or physically-based models and their corresponding adjoints are employed to relate diverse fields in both time and space and to relate what is observed to what is being analyzed. Computationally, the problem is very demanding and onstraining on the techniques that can be employed on a routine basis.

Atmospheric data assimilation↗
NASA NTRS2017

Data Assimilation and Uncertainties in Early Solar Cycle Predictions

Stochastic nature of solar activity variations together with our limited knowledge of the dynamo mechanism and subsurface dynamics causes uncertainty in predictions of the solar cycle. For improving the physics-­‐based predictions we can take advantage of the mathematical data assimilation approach that allows us to take into account both, observational errors and model uncertainties, and provide estimates of the next solar cycle along with prediction uncertainties. In this study we use the Parker's migratory dynamo model together with the equation of magnetic helicity balance, which reproduces main properties of the sunspot cycles and allow us to minimize discrepancies between the observed global activity variations and the model solution. The test simulation runs show that a reliable prediction can be obtained for two phases of preceding solar cycle: 1) if the polar field reversals shortly after the solar maxima (strong toroidal field and weak poloidal field), and 2) during the solar minima (strongest poloidal and weak toroidal fields). The early estimate of Cycle 25 obtained by this method shows that this cycle will start in 2019 – 2020, reach the maximum in 2023 – 2024, and that the mean sunspot number at the maximum will be about 90 (for the v2.0 sunspot number series).

Data Assimilation↗
NASA NTRS2023

Non-Gaussian Ensemble Filtering and Adaptive Inflation for Soil Moisture Data Assimilation

The rank histogram filter (RHF) and the ensemble Kalman filter (EnKF) are assessed for soil moisture estimation using perfect model (identical twin) synthetic data assimilation experiments. The primary motivation is to gauge the impact on analysis quality attributable to the consideration of non-Gaussian forecast error distributions. Using the NASA Catchment land surface model, the two filters are compared at 18 globally-distributed single-catchment locations for a 10-year experiment period. It is shown that both filters yield adequate estimates of soil moisture, with the RHF having a small but significant performance advantage. Most notably, the RHF systematically increases the normalized information contribution (NIC) score of the mean absolute bias by 0.05 over that of the EnKF for surface, root-zone and profile soil moisture. The RHF also increases the NIC score for the anomaly correlation of surface soil moisture by 0.02 over that of the EnKF (at a 5% significance level). Results also demonstrate that the performance of both filters is somewhat improved when the ensemble priors are adaptively inflated to offset the negative effects of systematic errors.

Soil moisture↗
NASA NTRS2022

An Agenda for Land Data Assimilation Priorities: Realizing the Promise of Terrestrial Water, Energy, and Vegetation Observations From Space

The task of quantifying spatial and temporal variations in terrestrial water, energy, and vegetation conditions is challenging due to the significant complexity and heterogeneity of these conditions, all of which are impacted by climate change and anthropogenic activities. To address this challenge, Earth Observations (EOs) of the land and their utilization within data assimilation (DA) systems are vital. Satellite EOs are particularly relevant, as they offer quasi-global coverage, are non-intrusive, and provide uniformity, rapid measurements, and continuity. The past three decades have seen unprecedented growth in the number and variety of land remote sensing technologies launched by space agencies and commercial companies around the world. There have also been significant developments in land modeling and DA systems to provide tools that can exploit these measurements. Despite these advances, several important gaps remain in current land DA research and applications. This paper discusses these gaps, particularly in the context of using DA to improve model states for short-term numerical weather and sub-seasonal to seasonal predictions. We outline an agenda for land DA priorities so that the next generation of land DA systems will be better poised to take advantage of the significant current and anticipated shifts and advancements in remote sensing, modeling, computational technologies, and hardware resources.

land surface↗
NASA NTRS2022

Effect of Assimilating SMAP Soil Moisture on CO2 and CH4 Fluxes through Direct Insertion in a Land Surface Model

Soil moisture impacts the biosphere–atmosphere exchange of CO2 and CH4 and plays an important role in the terrestrial carbon cycle. A better representation of soil moisture would improve coupled carbon–water dynamics in terrestrial ecosystem models and could potentially improve model estimates of large-scale carbon fluxes and climate feedbacks. Here, we investigate using soil moisture observations from the Soil Moisture Active Passive (SMAP) satellite mission to inform simulated carbon fluxes in the global terrestrial ecosystem model LPJ-wsl. Results suggest that the direct insertion of SMAP reduces the bias in simulated soil moisture at in situ measurement sites by 40%, with a greater improvement at temperate sites. A wavelet analysis between the model and measurements from 26 FLUXNET sites suggests that the assimilated run modestly reduces the bias of simulated carbon fluxes for boreal and subtropical sites at 1–2-month time scales. At regional scales, SMAP soil moisture can improve the estimated responses of CO2 and CH4 fluxes to extreme events such as the 2018 European drought and the 2019 rainfall event in the Sudd (Southern Sudan) wetlands. The simulated improvements to land–surface carbon fluxes using the direct insertion of SMAP are shown across a variety of timescales, which suggests the potential of SMAP soil moisture in improving the model representation of carbon–water coupling.

SMAP↗
NASA NTRS2023

Towards an Indian Land Data Assimilation System (ILDAS): A Coupled Hydrologic-Hydraulic System for Water Balance Assessments

Effective management of water resources requires reliable estimates of land surface states and fluxes, including water balance components. But most land surface models run in uncoupled mode and do not produce river discharge at catchment scales to be useful for water resources management applications. Such integrated systems are also rare over India where hydrometeorological extremes have wreaked havoc on the economy and people. So, an Indian Land Data Assimilation System (ILDAS) with a coupled land surface and a hydrodynamic model has been developed and driven by multiple meteorological forcings (0.1°, daily) to estimate land surface states, channel discharge, and floodplain inundation. ILDAS benefits from an integrated framework as well as the largest suite of observation records collected over India and has been used to produce a reanalysis product for 1981–2021 using four forcing datasets, namely, Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2), Climate Hazards Group InfraRed Precipitation with Station data (CHIRPS), ECMWF’s ERA-5, and Indian Meteorological Department (IMD) gridded precipitation. We assessed the uncertainty and bias in these precipitation datasets and validated all major components of the terrestrial water balance, i.e., surface runoff, soil moisture, terrestrial water storage anomalies, evapotranspiration, and streamflow, against a combination of satellite and in situ observation datasets. Our assessment shows that ILDAS can represent the hydrological processes reasonably well over the Indian landmass with IMD precipitation showing the best relative performance. Evaluation against ESA-CCI soil moisture shows that MERRA-2 based estimates outperform the others, whereas ERA-5 performs best in simulating evapotranspiration when evaluated against MODIS ET. Evaluations against observed records show that CHIRPS-based estimates have the highest performance in reconstructing surface runoff and streamflow. Once operational, this system will be useful for supporting transboundary water management decision making in the region.

Indian Land Data Assimilation System (ILDAS)↗
DOE OSTI2020

Xylose Assimilation for the Efficient Production of Biofuels and Chemicals by Engineered Saccharomyces cerevisiae

Microbial conversion of plant biomass into fuels and chemicals offers a practical solution to global concerns over limited natural resources, environmental pollution, and climate change. Pursuant to these goals, researchers have put tremendous efforts and resources towards engineering the yeast Saccharomyces cerevisiae to efficiently convert xylose, the second most abundant sugar in lignocellulosic biomass, into various fuels and chemicals. Here, we summarize recent advances in metabolic engineering of yeast to address bottlenecks on xylose assimilation, and to enable simultaneous co-utilization of xylose and other carbon sources in lignocellulosic hydrolysates. We also highlight distinct characteristics of xylose metabolism that can be harnessed to produce advanced biofuels and chemicals. Although many challenges remain, recent research investments have facilitated efficient fermentation of xylose and simultaneous co-consumption of xylose and glucose. In particular, understanding of xylose-induced metabolic rewiring in engineered yeast has encouraged use of xylose as a carbon source for producing various non-ethanol bioproducts. Furthermore, to boost the lignocellulosic biomass-based bioeconomy, much attention is expected to promote xylose-utilizing efficiency via reprogramming cellular regulatory networks, to attain robust co-fermentation of xylose and other cellulosic carbon sources under industrial conditions, and to exploit the advantageous traits of yeast xylose metabolism for producing diverse fuels and chemicals.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Xylose Assimilation Enhances Production of Isobutanol in Engineered Saccharomyces cerevisiae

Bioconversion of xylose—the second most abundant sugar in nature—into high–value fuels and chemicals by engineered Saccharomyces cerevisiae has been a long–term goal of the metabolic engineering community. Although most efforts have heavily focused on the production of ethanol by engineered S. cerevisiae , yields and productivities of ethanol produced from xylose have remained inferior as compared to ethanol produced from glucose. However, this entrenched focus on ethanol has concealed the fact that many aspects of xylose metabolism favor the production of non–ethanol products. Through reduced overall metabolic flux, a more respiratory nature of consumption, and evading glucose signaling pathways, the bioconversion of xylose can be more amenable to redirecting flux away from ethanol towards a desired target product. In this report, we show that coupling xylose consumption via the oxidoreductive pathway with a mitochondrially–targeted isobutanol biosynthesis pathway leads to enhanced product yields and titers as compared to cultures utilizing glucose or galactose as a carbon source. Through optimization of culture conditions, we achieve 2.6 g/L of isobutanol in fed–batch flask and bioreactor fermentations. Furthermore, these results suggest that there may be synergistic benefits of coupling xylose assimilation with the production of non–ethanol value–added products.

59 BASIC BIOLOGICAL SCIENCES↗