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At least 793 records · Page 44

Impacts of Vehicle (In)Security

Nuclear and radioactive material is routinely transported worldwide every day. Since 2010, the complexity of the transport vehicle to support such activities has grown exponentially. Many core functions of a vehicle are now handled by small embedded computer modules with more being added each year to enhance the owner’s experience and convenience. With a system as complex as today’s automobile, the potential for cyber security issues is certain. Hackers have begun exploring this new domain with public information increasingly disseminated. Because vehicles are allowed into and around secure nuclear facilities, the potential for using a vehicle as a new cyber entry point or vector into the facility is now plausible and must be mitigated. In addition, compromising such a vehicle could aide in illicit removal of nuclear material, putting sensitive cargo at risk. Because cyber attacks can now be introduced using vehicles, cyber security, needs to be integrated into an organization’s design basis threat document. Essentially, a vehicle now extends the perimeter for which security professionals are responsible.Electronic Control Units (ECU) responsible for handling all core and ancillary vehicle functions are interconnected using the controller area network (CAN) bus. A typical CAN network in a modern automobile contains 50 or more ECUs. The CAN protocol now supports a wide variety of areas, including automotive, road transportation, rail transportation, industrial automation, power generation, maritime, military vehicles, aviation, and medical devices. In many ways, the nuclear industry is employing the CAN bus protocol or other similar broadcast serial networks. This paper will provide an overview of the current state of automobile and CAN Bus security, as well as an overview of what has been publicly disclosed by many research organizations. It will then present several hypotheses of how vehicle security issues may impact nuclear activities. An initial discussion of how a vehicle can be used as a new threat vector to penetrate secure facilities will be presented. This includes how a modern automobile can be used as the exploitation mechanism for nearby devices such as laptops, cell phones, and wireless access points. Additional discussion will highlight how vehicle security might impact transportation of nuclear material through remote exploitation of a moving vehicle. The final discussion will include what possible implications might be relative to the physical protection systems at nuclear facilities. The audience will also be given details regarding the complexity of attack, thus implying the likelihood of successful exploitation, and information on how such attacks may be mitigated. Emerging security products for automobiles will be discussed and other mitigation methods will be detailed (e.g. disabling vehicle cellular modems). As a result, the audience will have a greater understanding of how to add vehicle security as a part of a comprehensive nuclear security policy.Finally, this paper will highlight the similarities between CAN Bus and other broadcast serial bus networks such as Profibus or DeviceNet, helping educate the reader on how susceptible this type of networking is to nefarious attacks and how it might affect components connected to many different nuclear systems, including control systems, safety systems, emergency systems, and support systems.

47 OTHER INSTRUMENTATION↗

Secure Sensor Platform Software Utilities v.2.0

The SSP Software package allows a user to connect to a CoCIM via a Personality Programmer and: Reset the firmware of the CoCIM using the SSP Personality Programmer. The changes that can be made include things such as: Recovering from a tamper event; Resetting the initialization date and message counter; Change configuration values of the CoCIM using the SSP Seal Configuration or the RMSA Configuration File Editor programs. Configuration values that can be set will depend on what version of the CoCIM firmware is being used, but can include: The IP address of the translator with which this CoCIM (or RMSA) communicates; The number of attempts the CoCIM (or RMSA) will attempt to contact the translator; The primary CoCIM (or RMSA) channel; The secondary CoCIM (or RMSA) channel; Locations of files containing CoCIM (or RMSA) encryption keys SSPSerialDataDumper downloads a CoCIM’s stored messages to a computer connected to the CoCIM via a serial cable; SSPLogAnalyzer decrypts and authenticates messages that have been downloaded using the Serial Data Dumper program and then displays the messages values.

Hymel, Ross↗

Control System Framework for Using G-Code-Based 3D Printing Paths on a Multi-Degree of Freedom Robotic Arm

This paper describes a control system framework using G-Code-based 3D printing paths on a serial link robot manipulator with multiple degrees of freedom. Usually, G-Code is created by a software application, commonly referred to as a slicer, meant for gantry systems. However, G-Code does not address the kinematic complexity nor take advantage of the flexibility available in serial link robot manipulators. This paper provides an overview of the additive manufacturing process and G-Code, types of additive manufacturing deposition movements, common terminology used, the roles of parsers and translators, step-by-step instructions on how to implement this control system, and results and findings from this research. The presented framework can be used for a number of additive manufacturing methods, hybrid solutions, or applications not directly related to additive manufacturing. The implementation was successfully tested on a manipulator with seven degrees of freedom that successfully performed hundreds of hours of large-scale wire arc metal deposition.

Nycz, Andrzej↗

System and method for hardware scheduling of indexed barriers

A method and a system are provided for hardware scheduling of indexed barrier instructions. Execution of a plurality of threads to process instructions of a program that includes a barrier instruction is initiated and when each thread reaches the barrier instruction, the thread pauses execution of the instructions. A first sub-group of threads in the plurality of threads is associated with a first sub-barrier index and a second sub-group of threads in the plurality of threads is associated with a second sub-barrier index. When the barrier instruction can be scheduled for execution, threads in the first sub-group are executed serially and threads in the second sub-group are executed serially and at least one thread in the first sub-group is executed in parallel with at least one thread in the second sub-group.

Lindholm, John Erik↗

System and method for hardware scheduling of conditional barriers and impatient barriers

A method and a system are provided for hardware scheduling of barrier instructions. Execution of a plurality of threads to process instructions of a program that includes a barrier instruction is initiated, and when each thread reaches the barrier instruction during execution of program, it is determined whether the thread participates in the barrier instruction. The threads that participate in the barrier instruction are then serially executed to process one or more instructions of the program that follow the barrier instruction. A method and system are also provided for impatient scheduling of barrier instructions. When a portion of the threads that is greater than a minimum number of threads and less than all of the threads in the plurality of threads reaches the barrier instruction each of the threads in the portion is serially executed to process one or more instructions of the program that follow the barrier instruction.

Lindholm, John Erik↗

A Self-Synchronizing Underwater Acoustic Network for Mooring Load Monitoring of a Wave Energy Converter

This paper reports on the development of a self-synchronizing underwater acoustic network developed for remote monitoring of mooring loads in Wave Energy Converters (WECs). This network uses Time Division Multiple Access and operates self-contained with the ability for users to remotely transmit commands to the network as needed. Each node is a self-contained unit, consisting of a protocol adaptor board, an FAU-DPAM underwater acoustic modem and a battery pack. A node can be connected to a load cell, to a topside user or to the WEC. Every node is swapable. The protocol adaptor board, named Protocol Adaptor for Digital LOad Cell (PADLOC) supports a variety of digital load cell message formats (CAN, MODBUS, custom ASCII) and underwater acoustic modem serial formats. PADLOC enables topside users to connect to separate load cells through a user-specific command. This is especially important if the user is monitoring multiple load cells during deployment or maintenance, when the primary data system may be offline. Each PADLOC board handles formatting, buffering and has a one-on-one serial connection with each pair (node) of a digital load cell and acoustic modem. In addition, each PADLOC board handles the timekeeping and power saving features for each node. The only limitation is the data bit rate and delay limitations associated with the underwater acoustic modem. A four node self-synchronizing network has been developed to demonstrate the load cell monitoring capability using the PADLOC technology on the CalWave WEC.

acoustic↗

Dual-mode oscillator for stress compensated cut resonator

Both parallel-type and serial-type dual-mode oscillators employing stress compensated cut resonators having various configurations are disclosed. Both classes of dual-mode oscillators employ multiple tank circuits to pass one frequency of the resonator and block the other frequency. The tank circuits isolate the operation of the two oscillator sub-circuits that form the dual-mode oscillator from one another. The dual-mode oscillators may be implemented with either bipolar or CMOS transistors. The parallel-type dual-mode oscillators employ inverters to provide gain. The serial-type dual-mode oscillators employ a two (or three) stage design including a follower circuit first stage and an inverting amplifier/limiter circuit second stage, with an optional intervening transimpedance amplifier stage.

Wessendorf, Kurt O.↗

Authentication Protocol for ICS without Encryption

Industrial control systems (ICS) describes the different types of control systems and associated instrumentation, which includes the devices, systems, networks, and controls used to operate and/or automate industrial processes. Depending on the industry, each ICS functions differently and are built to electronically manage tasks efficiently. Historically, industrial plants have included networking, and changes have been made over time without consideration for security. Many ICS devices currently have inadequate security features. Adding encryption in ICS is undesirable because many of the new detection method involves deep packet inspection. Therefore, we propose to develop a method of providing authentication between devices without encrypting the data. This testbed design will allow rapid development and experimentation with Cyber Physical Systems. Modbus connects to a supervisory computer with a Remote Terminal Unit (RTU) in Supervisory Control and Data Acquisition (SCADA) systems. Our project seeks to enhance security in the ICS environment by adding device authentication to the lower levels of the plant floor. This approach was selected as it allows verification of the sender of data from level 1/level 0 devices up to supervisory systems. This addition is desirable as it adds enhanced verification to the integrity of system data without obscuring (via encryption) the data being transmitted across the network. This is important because many ICS systems are real time critical (decryption adds to latency) and many other good security options require deep packet inspection (which encryption completely defeats). To accomplish this, a proof of concept of adding an authentication scheme was designed and will be tested with a common ICS protocol. The setup includes a single serial cable connecting the serial ports on two devices, a Master and a Minion. Authentication will occur in the following methods: - Data layer involving Transport Layer Security/Secure Socket Layer (TLS/SSL); - TCP/IP route implementation; - Key exchange algorithm; - Raspberry Pi programming for authentication. A portion of the setup includes adding Raspberry Pi into the system as the device is handling the authentication for the network traffic. Modbus is the chosen ICS protocol. It is used to transmit signals from instrumentation and control devices back to a main controller or data gathering system. Typically, the device identity is assumed but not verified. For verifying device identity, we constructed a digital signature architecture with TLS. A novel adaptation of this is to use only the digital signature that is provided and not the encryption capability. This allows ICS traffic to flow unobscured while still providing verification for the integrity of the data. Verification of this process will involve adding additional I/O level network devices with spoofed IP addresses and detecting the authenticated versus unauthenticated traffic. Our TLS implementation will have encryption disabled but should still allow for digital signing of data. This will enable our system to distinguish between real end devices and spoofed end devices. This experiment is presently building the test setup. It is focusing on a small setting to identify authenticated and unauthenticated devices on the network. This should allow for scaling to a larger network size after the initial proof of concept. One concern with this scheme is a certificate deployment has a large scale key management. Network size will thus increase the key management task for security. In addition, we believe that further research should be done on exploring the use of this method to defeat man-in-the-middle attacks.

42 ENGINEERING↗

Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature

Room-temperature macromolecular crystallography allows protein structures to be determined under close-to-physiological conditions, permits dynamic freedom in protein motions and enables time-resolved studies. In the case of metalloenzymes that are highly sensitive to radiation damage, such room-temperature experiments can present challenges, including increased rates of X-ray reduction of metal centres and site-specific radiation-damage artefacts, as well as in devising appropriate sample-delivery and data-collection methods. It can also be problematic to compare structures measured using different crystal sizes and light sources. In this study, structures of a multifunctional globin, dehaloperoxidase B (DHP-B), obtained using several methods of room-temperature crystallographic structure determination are described and compared. Here, data were measured from large single crystals and multiple microcrystals using neutrons, X-ray free-electron laser pulses, monochromatic synchrotron radiation and polychromatic (Laue) radiation light sources. These approaches span a range of 18 orders of magnitude in measurement time per diffraction pattern and four orders of magnitude in crystal volume. The first room-temperature neutron structures of DHP-B are also presented, allowing the explicit identification of the hydrogen positions. The neutron data proved to be complementary to the serial femtosecond crystallography data, with both methods providing structures free of the effects of X-ray radiation damage when compared with standard cryo-crystallography. Comparison of these room-temperature methods demonstrated the large differences in sample requirements, data-collection time and the potential for radiation damage between them. With regard to the structure and function of DHP-B, despite the results being partly limited by differences in the underlying structures, new information was gained on the protonation states of active-site residues which may guide future studies of DHP-B.

36 MATERIALS SCIENCE↗

Structural Mechanism of an Efficacy Photoswitch Targeting the β 2 ‐adrenergic Receptor

The field of photopharmacology develops light-responsive drugs that can modulate protein activity, enabling precise and dynamic investigations of their roles in health and disease. Adrenergic receptors are prominent targets for this approach because they are prototypical G protein-coupled receptors with high clinical relevance in bronchial and cardiovascular diseases. Here, we employed the azobenzene-based compound photoazolol-1 in combination with time-resolved serial crystallography at X-ray free-electron lasers to resolve the molecular mechanisms by which photoswitchable β-blockers modulate activity of the β 2 -adrenoceptor (β 2 AR). Time-resolved structures of the receptor bound to trans-photoazolol-1 (pre-photoconversion), a strained intermediate in the nanosecond range, and the fully photoisomerized cis-photoazolol-1 reveal how isomerization of the azobenzene moiety induces distinct conformational changes within the orthosteric ligand binding pocket. Within seconds, light-excited photoazolol-1 adopts a new binding pose, altering interactions with extracellular loop 2 and shifting the positions of transmembrane helices 5, 6, and 7. Functional assays of β 2 AR in cellular membranes show that photoazolol-1 acts as an efficacy photoswitch, changing from an inverse agonist to a neutral antagonist upon isomerization without leaving the binding pocket. In combination, these findings suggest a molecular mechanism for activity modulation via efficacy photoswitches and provide a framework for designing ligands that exploit light-driven transitions within the binding pocket to achieve spatiotemporal control of receptor function.

G protein-coupled receptors↗

Rational Control of Off‐State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement**

Abstract Reversibly photoswitchable fluorescent proteins are essential markers for advanced biological imaging, and optimization of their photophysical properties underlies improved performance and novel applications. Here we establish a link between photoswitching contrast, one of the key parameters that dictate the achievable resolution in nanoscopy applications, and chromophore conformation in the non‐fluorescent state of rsEGFP2, a widely employed label in REversible Saturable OpticaL Fluorescence Transitions (RESOLFT) microscopy. Upon illumination, the cis chromophore of rsEGFP2 isomerizes to two distinct off ‐state conformations, trans1 and trans2 , located on either side of the V151 side chain. Reducing or enlarging the side chain at this position (V151A and V151L variants) leads to single off ‐state conformations that exhibit higher and lower switching contrast, respectively, compared to the rsEGFP2 parent. The combination of structural information obtained by serial femtosecond crystallography with high‐level quantum chemical calculations and with spectroscopic and photophysical data determined in vitro suggests that the changes in switching contrast arise from blue‐ and red‐shifts of the absorption bands associated to trans1 and trans2 , respectively. Thus, due to elimination of trans2 , the V151A variants of rsEGFP2 and its superfolding variant rsFolder2 display a more than two‐fold higher switching contrast than their respective parent proteins, both in vitro and in E. coli cells. The application of the rsFolder2‐V151A variant is demonstrated in RESOLFT nanoscopy. Our study rationalizes the connection between structural and photophysical chromophore properties and suggests a means to rationally improve fluorescent proteins for nanoscopy applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Investigating added value of regional climate modeling in North American winter storm track simulations

Extratropical Cyclone (EC) characteristics depend on a combination of large-scale factors and regional processes. However, the latter are considered to be poorly represented in global climate models (GCMs), partly because their resolution is too coarse. This work describes a framework using possibilities given by regional climate models (RCMs) to gain insight into storm activity during winter over North America (NA). Recent past climate period (1981–2005) is considered to assess EC activity over NA using the NCEP regional reanalysis (NARR) as a reference, along with the European reanalysis ERA-Interim (ERAI) and two CMIP5 GCMs used to drive the Canadian Regional Climate Model—version 5 (CRCM5) and the corresponding regional-scale simulations. While ERAI and GCM simulations show basic agreement with NARR in terms of climatological storm track patterns, detailed bias analyses show that, on the one hand, ERAI presents statistically significant positive biases in terms of EC genesis and therefore occurrence while capturing their intensity fairly well. On the other hand, GCMs present large negative intensity biases in the overall NA domain and particularly over NA eastern coast. In addition, storm occurrence over the northwestern topographic regions is highly overestimated. When the CRCM5 is driven by ERAI, no significant skill deterioration arises and, more importantly, all storm characteristics near areas with marked relief and over regions with large water masses are significantly improved with respect to ERAI. Conversely, in GCMdriven simulations, the added value contributed by CRCM5 is less prominent and systematic, except over western NA areas with high topography and over the Western Atlantic coastlines where the most frequent and intense ECs are located. Despite this significant added-value on seasonalmean characteristics, a caveat is raised on the RCM ability to handle storm temporal ‘seriality’, as a measure of their temporal variability at a given location. In fact, the driving models induce some significant footprints on the RCM skill to reproduce the intra-seasonal pattern of storm activity.

54 ENVIRONMENTAL SCIENCES↗

Recent Developments in Femtosecond Laser-Enabled TriBeam Systems

Streams of multimodal three-dimensional (3D) and four-dimensional (4D) data are revolutionizing our ability to design and predict the behavior of a broad array of advanced materials systems. Over the last 10 years, a new 3D imaging platform consisting of a femtosecond (fs) pulsed laser coupled with a focused ion beam scanning electron microscope (FIB SEM) has been developed by UC Santa Barbara in collaboration with Thermo Fisher Scientific (formerly FEI). The femtosecond-laser-enabled FIB SEM, called the TriBeam, has become one of the only 3D serial sectioning methods available that can gather millimeter-scaled multimodal datasets at sub-μm voxel resolutions; these length scales are critical for many materials problems. Multimodal chemical, crystallographic, and morphological information can be gathered rapidly on a layer-by-layer basis and reconstructed in 3D. Large (gigabyte to terabyte scale) 3D datasets have been generated for a broad array of materials systems, including metallic alloys, ceramics, biomaterials, polymer- and ceramic-matrix composites, and semiconductors. The research tasks conducted have resulted in a completely new design, operating with a dual-wavelength femtosecond-pulsed laser on a plasma focused ion beam (PFIB) platform.

36 MATERIALS SCIENCE↗

Comparison of three measurement modalities for 3D characterization of manufactured features and process-induced porosity in titanium alloy additively manufactured parts

Nondestructive characterization of internal features and defects within complex components is vital for many industrial applications, particularly with the advent of additive manufacturing (AM) technologies. However, community understanding of the limitations of nondestructive methods such as X-ray Computed Tomography (CT) can be limited in certain industrial sectors as these may be emergent applications. In this paper, we investigate the limits of X-ray CT measurements and compare extracted data with mechanical polishing serial sectioning (MPSS) and confocal laser scanning microscopy (CLSM). The test object is an additively manufactured titanium alloy disk that contains both process-induced porosity and machined features, including focused ion beam milled features designed to probe the resolution limits of X-ray CT. Results show that each of these characterization techniques has advantages and disadvantages. We compare data acquisition times, spatial resolution, geometric measurement accuracy and defect visualization fidelity across these modalities to establish a practical framework.

Additive manufacturing↗

In Situ Structural Observation of a Substrate- and Peroxide-Bound High-Spin Ferric-Hydroperoxo Intermediate in the P450 Enzyme CYP121

The P450 enzyme CYP121 from Mycobacterium tuberculosis catalyzes a carbon–carbon (C–C) bond coupling cyclization of the dityrosine substrate containing a diketopiperazine ring, cyclo(l-tyrosine-l-tyrosine) (cYY). An unusual high-spin (S = 5/2) ferric intermediate maximizes its population in less than 5 ms in the rapid freeze-quenching study of CYP121 during the shunt reaction with peracetic acid or hydrogen peroxide in acetic acid solution. Here, we show that this intermediate can also be observed in the crystalline state by EPR spectroscopy. By developing an on-demand-rapid-mixing method for time-resolved serial femtosecond crystallography with X-ray free-electron laser (tr-SFX-XFEL) technology covering the millisecond time domain and without freezing, we structurally monitored the reaction in situ at room temperature. After a 200 ms peracetic acid reaction with the cocrystallized enzyme–substrate microcrystal slurry, a ferric-hydroperoxo intermediate is observed, and its structure is determined at 1.85 Å resolution. The structure shows a hydroperoxyl ligand between the heme and the native substrate, cYY. The oxygen atoms of the hydroperoxo are 2.5 and 3.2 Å from the iron ion. The end-on binding ligand adopts a near-side-on geometry and is weakly associated with the iron ion, causing the unusual high-spin state. This compound 0 intermediate, spectroscopically and structurally observed during the catalytic shunt pathway, reveals a unique binding mode that deviates from the end-on compound 0 intermediates in other heme enzymes. The hydroperoxyl ligand is only 2.9 Å from the bound cYY, suggesting an active oxidant role of the intermediate for direct substrate oxidation in the nonhydroxylation C–C bond coupling chemistry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature

Multimeric protein assemblies are abundant in nature. Streptavidin is an attractive protein that provides a paradigm system to investigate the intra- and intermolecular interactions of multimeric protein complexes. Also, it offers a versatile tool for biotechnological applications. Here, we present two apo-streptavidin structures, the first one is an ambient temperature Serial Femtosecond X-ray crystal (Apo-SFX) structure at 1.7 Å resolution and the second one is a cryogenic crystal structure (Apo-Cryo) at 1.1 Å resolution. These structures are mostly in agreement with previous structural data. Combined with computational analysis, these structures provide invaluable information about structural dynamics of apo streptavidin. Collectively, these data further reveal a novel cooperative allostery of streptavidin which binds to substrate via water molecules that provide a polar interaction network and mimics the substrate biotin which displays one of the strongest affinities found in nature.

60 APPLIED LIFE SCIENCES↗

Early-stage dynamics of chloride ion–pumping rhodopsin revealed by a femtosecond X-ray laser

Chloride ion–pumping rhodopsin (ClR) in some marine bacteria utilizes light energy to actively transport Cl – into cells. How the ClR initiates the transport is elusive. Here, we show the dynamics of ion transport observed with time-resolved serial femtosecond (fs) crystallography using the Linac Coherent Light Source. X-ray pulses captured structural changes in ClR upon flash illumination with a 550 nm fs-pumping laser. High-resolution structures for five time points (dark to 100 ps after flashing) reveal complex and coordinated dynamics comprising retinal isomerization, water molecule rearrangement, and conformational changes of various residues. Combining data from time-resolved spectroscopy experiments and molecular dynamics simulations, this study reveals that the chloride ion close to the Schiff base undergoes a dissociation–diffusion process upon light-triggered retinal isomerization.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Scaling neural simulations in STACS

Abstract As modern neuroscience tools acquire more details about the brain, the need to move towards biological-scale neural simulations continues to grow. However, effective simulations at scale remain a challenge. Beyond just the tooling required to enable parallel execution, there is also the unique structure of the synaptic interconnectivity, which is globally sparse but has relatively high connection density and non-local interactions per neuron. There are also various practicalities to consider in high performance computing applications, such as the need for serializing neural networks to support potentially long-running simulations that require checkpoint-restart. Although acceleration on neuromorphic hardware is also a possibility, development in this space can be difficult as hardware support tends to vary between platforms and software support for larger scale models also tends to be limited. In this paper, we focus our attention on Simulation Tool for Asynchronous Cortical Streams (STACS), a spiking neural network simulator that leverages the Charm++ parallel programming framework, with the goal of supporting biological-scale simulations as well as interoperability between platforms. Central to these goals is the implementation of scalable data structures suitable for efficiently distributing a network across parallel partitions. Here, we discuss a straightforward extension of a parallel data format with a history of use in graph partitioners, which also serves as a portable intermediate representation for different neuromorphic backends. We perform scaling studies on the Summit supercomputer, examining the capabilities of STACS in terms of network build and storage, partitioning, and execution. We highlight how a suitably partitioned, spatially dependent synaptic structure introduces a communication workload well-suited to the multicast communication supported by Charm++. We evaluate the strong and weak scaling behavior for networks on the order of millions of neurons and billions of synapses, and show that STACS achieves competitive levels of parallel efficiency.

59 BASIC BIOLOGICAL SCIENCES↗