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At least 793 records · Page 44

Foliar functional traits from imaging spectroscopy across biomes in eastern North America

Summary Foliar functional traits are widely used to characterize leaf and canopy properties that drive ecosystem processes and to infer physiological processes in Earth system models. Imaging spectroscopy provides great potential to map foliar traits to characterize continuous functional variation and diversity, but few studies have demonstrated consistent methods for mapping multiple traits across biomes. With airborne imaging spectroscopy data and field data from 19 sites, we developed trait models using partial least squares regression, and mapped 26 foliar traits in seven NEON (National Ecological Observatory Network) ecoregions (domains) including temperate and subtropical forests and grasslands of eastern North America. Model validation accuracy varied among traits (normalized root mean squared error, 9.1–19.4%; coefficient of determination, 0.28–0.82), with phenolic concentration, leaf mass per area and equivalent water thickness performing best across domains. Across all trait maps, 90% of vegetated pixels had reasonable values for one trait, and 28–81% provided high confidence for multiple traits concurrently. Maps of 26 traits and their uncertainties for eastern US NEON sites are available for download, and are being expanded to the western United States and tundra/boreal zone. These data enable better understanding of trait variations and relationships over large areas, calibration of ecosystem models, and assessment of continental‐scale functional diversity.

Wang, Zhihui↗

Investigation of hot-spots due to trapped flux in niobium superconducting radiofrequency cavities

One of the significant sources of residual losses in superconducting radio-frequency cavities is magnetic flux trapped during the cool-down due to the incomplete Messier effect. If the trapped vortices are non-uniformly distributed on the cavity surface, the temperature mapping revealed the “hotspots” at the location of high density of pinned vortices. Here, we performed a rf test on 1.3 GHz single cell cavity with the combination of the temperature mapping system. The temperature mapping reveled the development of the hot spots with the increase in rf field inside the cavity. When magnetic field is trapped locally on the surface of cavity, the hot-spots strength increase rapidly, showing the direct correlation of vortex induced hot spot and corresponding rf loss.

Accelerator Physics↗

Improvement in the Thermal-to-Structural Model Mapping Process for Integrated Modeling for the Roman Space Telescope

Integrated Modeling has been a key component of verifying optical requirements for the Nancy Grace Roman Space Telescope (RST) that are either impossible or impractical to verify exclusively through ground testing. Two major areas for integrated Modeling are Jitter and Thermal Distortion that require the exchanges of model performance predictions across disciplines. In both cases, distortions are impressed on optical models to evaluate the impact on boresight alignment and wave front error. In the case of Jitter, the disturbances are driven by reactions to motions most often from actuators; however, in the case of thermal distortion, the motions are driven by thermal expansion or contraction as a result of changing temperatures. This then requires a link further upstream to the thermal model, which is used to predict the thermal performance and temperature gradients and stability. The process for mapping temperatures from a thermal model to a corresponding structural model has been performed numerous times through the RST project lifecycle, with improvements in the accuracy, verification, and effort sought throughout. This paper describes some of the recent improvements to the process, including: capture of the visualization parameters, automatic generation of the mapped images for both the thermal and structural model groupings, and reduction in the effort to assemble the full set of mapped temperatures. These upgrades have greatly reduced the manual effort associated with thermal mapping and allowed for faster turn-around of Integrated Modeling predictions.

Thermal Mapping↗

Active Galactic Nuclei Continuum Reverberation Mapping Based on Zwicky Transient Facility Light Curves

We perform a systematic survey of active galactic nuclei (AGNs) continuum lags using ~3 days cadence gri-band light curves from the Zwicky Transient Facility. We select a sample of 94 type 1 AGNs at z < 0.8 with significant and consistent inter-band lags based on the interpolated cross-correlation function method and the Bayesian method JAVELIN. Within the framework of the "lamp-post" reprocessing model, our findings are: (1) The continuum emission (CE) sizes inferred from the data are larger than the disk sizes predicted by the standard thin-disk model. (2) For a subset of the sample, the CE size exceeds the theoretical limit of the self-gravity radius (12 lt-days) for geometrically thin disks. (3) The CE size scales with continuum luminosity as R CE ∝ L 0.48±0.04 with a scatter of 0.2 dex, analogous to the well-known radius–luminosity relation of broad Hβ. These findings suggest a significant contribution of diffuse continuum emission from the broad-line region (BLR) to AGN continuum lags. We find that the R CE –L relation can be explained by a photoionization model that assumes ~23% of the total flux comes from the diffuse BLR emission. In addition, the ratio of the CE size and model-predicted disk size anticorrelates with the continuum luminosity, which is indicative of a potential nondisk BLR lag contribution evolving with the luminosity. Finally, a robust positive correlation between the CE size and black hole mass is detected.

79 ASTRONOMY AND ASTROPHYSICS↗

Field studies of PERC and Al-BSF PV module performance loss using power and I-V timeseries

We have studied the degradation of both full-sized modules and minimodules with PERC and Al-BSF cell variations in fields while considering packaging strategies. We demonstrate the implementations of data-driven tools to analyze large numbers of modules and volumes of timeseries data to obtain the performance loss and degradation pathways. This data analysis pipeline enables quantitative comparison and ranking of module variations, as well as mapping and deeper understanding of degradation mechanisms. The best performing module is a half-cell PERC, which shows a performance loss rate ( PLR ) of −0.27 ± 0.12% per annum (%/ a ) after initial losses have stabilized. Minimodule studies showed inconsistent performance rankings due to significant power loss contributions via series resistance, however, recombination losses remained stable. Overall, PERC cell variations outperform or are not distinguishable from Al-BSF cell variations.

Curran, Alan J.↗

Enhanced ATAMM for increased throughput performance of multicomputer data flow architectures

The Algorithm To Architecture Mapping Model (ATAMM) is a Petri-net-based model which provides a strategy for periodic execution of a class of real-time algorithms on multicomputer dataflow architectures. The problem domain of particular interest is the execution of large-grained, decision-free algorithms on homogeneous processing elements. Design techniques are discussed and performance measurements are defined. A multiple-graph execution strategy is shown to increase throughput performance. It is shown that the same increase in performance is attainable with minor modifications to the existing ATAMM.

Jones, R. L.↗

Jupiter's Atmospheric Temperatures: From Voyager IRIS to Cassini CIRS

Retrievals run on Cassini Composite Infrared Spectrometer data obtained during the distant Jupiter flyby have been used to generate global temperature maps of the planet in the troposphere and stratosphere. Similar retrievals were performed on Voyager 1 IRIS data and have provided the first detailed IRIS map of the stratosphere. In both data sets, high latitude troposphere temperatures are presented for the first time, and the meridional gradients indicate the presence of circumpolar jets. Thermal winds were calculated for each data set and show strong vertical shears in the zonal winds at low latitudes. The temperatures retrieved from the two spacecraft were also compared with yearly ground-based data obtained over the intervening two decades. Tropospheric temperatures reveal gradual changes at low latitudes, with little obvious seasonal or short-term variation (Orton et al. 1994). Stratospheric temperatures show much more complicated behavior over short timescales, consistent with quasi-quadrennial oscillations at low latitudes, as suggested in prior analyses of shorter intervals of ground- based data (Orton et al. 1991, Friedson 1999). A scaling analysis indicates that meridional motions, mechanically forced by wave or eddy convergence, play an important role in modulating the temperatures and winds in the upper troposphere and stratosphere on seasonal and shorter time scales. At latitudes away from the equator, the mechanical forcing can be derived simply from a temporal record of temperature and its vertical derivative. Ground-based observations with improved vertical resolution and/or long-term monitoring from spacecraft are required for this purpose.

Simon-Miller, Amy A.↗

A global lipid map defines a network essential for Zika virus replication

>Zika virus (ZIKV), an arbovirus of global concern, remodels intracellular membranes to form replication sites. How ZIKV dysregulates lipid networks to allow this, and consequences for disease, is poorly understood. Here, we performed comprehensive lipidomics to create a lipid network map during ZIKV infection. We found that ZIKV significantly alters host lipid composition, with the most striking changes seen within subclasses of sphingolipids. Ectopic expression of ZIKV NS4B protein resulted in similar changes, demonstrating a role for NS4B in modulating sphingolipid pathways. Disruption of sphingolipid biosynthesis in various cell types, including human neural progenitor cells, blocked ZIKV infection. Additionally, the sphingolipid ceramide redistributes to ZIKV replication sites and increasing ceramide levels by multiple pathways sensitizes cells to ZIKV infection. Thus, we identify a sphingolipid metabolic network with a critical role in ZIKV replication and show that ceramide flux is a key mediator of ZIKV infection.

59 BASIC BIOLOGICAL SCIENCES↗

Upper Atmosphere Research Satellite (UARS) Microwave Limb Sounder (MLS) mapping - Validation, early results and applications

The results of limitation studies performed with the UARS MLS are presented. A consistent set of algorithms allows the extraction of the spectral coefficients in time and longitude from asynoptically sampled satellite data and the subsequent reconstruction of synoptic maps from that spectral information. In addition to providing synoptic maps, the asynoptic technique allows the use of standard spectral analysis tools such as autocorrelation and cross correlation.

Elson, Lee S.↗

The HCMM system: Development and performance

The structure and history of the heat capacity mapping mission program is reviewed and the spacecraft is described including engineering specifications, instrument design, data handling, and image characteristics.

Stuart, L. M., Jr.↗

Performance evaluation of the JPL TOPSAR system: An across-track interferometric SAR system for topographic mapping

An across-track interferometric (XTI) SAR has the capability of determining the three dimensional target location from the recorded radar echos thus providing high spatial resolution both horizontally and vertically. The output of an XTI SAR will typically include both a radar backscatter map and a digital elevation model (DEM). The accuracy of the derived DEM is determined by factors such as data acquisition geometry, signal-to-noise ratio, knowledge of platform position and attitude as well as the accuracy of the processing system. In the summer of 1992 the authors acquired TOPSAR data over the Ft. Irwin area in California, a desert area with significant relief (height standard deviation 150 m). Very accurate DEM's have been derived for this area by the Topographic Engineering Center (TEC) using digital correlation methods on 1:20,000 scale digitized photographs. Corner reflectors were deployed in the area, and their locations were determined to cm accuracies by the Defense Mapping Agency (DMA) using differential GPS techniques. DEM's generated from the acquired radar data have been rotated and translated to overlay the reference DEM's provided by TEC. A detailed description of the errors and their characteristics will be given. The standard deviations of the radar data sets we acquired measured over a 5.6 by 7 km area were 1.9 and 2.3 m. The corresponding numbers for flat areas were 1.1 and 2.0 m and for mountain areas 3.3 and 2.2 m.

Madsen, Soren N.↗

Simulating the weak death of the neutron in a femtoscale universe with near-Exascale computing

The fundamental particle theory called Quantum Chromodynamics (QCD) dictates everything about protons and neutrons, from their intrinsic properties to interactions that bind them into atomic nuclei. Quantities that cannot be fully resolved through experiment, such as the neutron lifetime (whose precise value is important for the existence of light-atomic elements that make the sun shine and life possible), may be understood through numerical solutions to QCD. We directly solve QCD using Lattice Gauge Theory and calculate nuclear observables such as neutron lifetime. We have developed an improved algorithm that exponentially decreases the time-tosolution and applied it on the new CORAL supercomputers, Sierra and Summit. We use run-time autotuning to distribute GPU resources, achieving 20% performance at low node count. We also developed optimal application mapping through a job manager, which allows CPU and GPU jobs to be interleaved, yielding 15% of peak performance when deployed across large fractions of CORAL.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

ICESat-2 Precision Orbit Determination

The ICESat-2 Precision Orbit Determination (POD) system computes the precise position of the laser altimeter instrument in inertial space, a measurement necessary for accurate geolocation of individual photon surface returns. ICESat-2 POD solutions are generated by the reduction of Global Positioning System (GPS) double-difference carrier phase observable residuals with NASA Goddard Space Flight Center's GEODYN software. Independent satellite laser ranging (SLR) measurements are withheld from the POD solutions and used as an independent arbiter of POD performance. Measurement model updates in the form of estimated GPS antenna phase center and satellite laser ranging retro-reflector tracking point offset vectors as well as a GPS antenna phase center variation map have led to significant improvement in POD performance. GPS residual analysis and orbit precision analysis show no significant anomalous temporal or geographic POD performance issues. The independent SLR residual analysis indicates that POD solutions have achieved a radial orbit accuracy just below 1.5 cm, thus exceeding the mission radial orbit accuracy requirement of 3.0 cm by more than a factor of 2. Future POD processing updates have been identified and will lead to even further improvements in POD performance.

T. C. Thomas↗

A global lipid map defines a network essential for Zika virus replication

Zika virus (ZIKV), an emerging mosquito-borne pathogen of global concern, remodels intra-cellular lipid membranes to form replication factories. How ZIKV regulates lipid networks to allow infection, and consequences for disease is poorly understood. Here, we performed comprehensive lipidomics to create a lipid network map during ZIKV infection. We found that ZIKV significantly alters host lipid composition with striking changes seen within sub-classes of sphingolipids. We also demonstrated that ectopic expression of NS4B, one of the non-structural proteins of ZIKV with known roles in ZIKV replication resulted in similar changes on cellular lipidome. Ceramide, a key bioactive molecule with functions in signaling and apoptosis, redistributes to ZIKV replication factories. Increase of ceramide through knockout of sphingomyelin synthase or via sphingomyelinase-catalyzed degradation of sphingomyelin to ceramide sensitizes cells to ZIKV infection. Remarkably, we observed an enrichment of pro-apoptotic ceramide sub-species in infected cells, providing a link between ZIKV biogenesis and apoptosis. Thus, we identify a sphingolipid metabolic network with a critical role in ZIKV replication and show that ceramide flux is a key mediator of ZIKV infection.

60 APPLIED LIFE SCIENCES↗

Two-channel Costas loop tracking performance for UQPSK signals with arbitrary data formats

Previous results on the tracking performance of two-channel Costas-type carrier synchronization loops are generalized and corrected, in order that they may be applied to several mixed-format cases. In particular, the mean-square phase jitter performance of these loops with active arm filters, synchronous or asynchronous symbol clocks, and arbitrary data formats on the two channels is examined. It is demonstrated that for each case, selection of the channel gain ratio, as motivated by the MAP estimation theory, does not guarantee optimum loop tracking performance: in some instances, a conventional single-channel Costas loop would outperform the two-channel version with the MAP choice of gain ratio. It is suggested that the gain ratio be chosen to directly minimize the mean-square phase tracking jitter which is equivalent to minimizing the loop's 'squaring loss'. This can, in some cases, improve the performance measure, although in all cases, the two-channel loop will still outperform the single-channel version.

Simon, M. K.↗

Allosteric prediction via convolutional neural networks and protein structural and dynamical features

Allostery is the phenomenon whereby a binding event or covalent modification at one site in a protein modulates function at a distal site, thus changing a protein’s functional state. As such, it is a ubiquitous aspect of protein functional regulation. Computationally predicting allosteric states is important as part of the broader challenge of functional annotation, but it also has practical implications for drug development, as targeting an allosteric site often affords greater specificity compared with targeting an orthosteric site. This study introduces a machine learning approach to predict the allosteric functional state using the small G-protein KRas as the model system, due to its implication in many types of cancer and being well studied as a result with many x-ray crystallographic structures of KRas available with different mutations and ligands bound. Using structural and dynamical features that can be cast as images, namely interatomic distances, contact maps, covariance, and mutual information, supervised learning was performed using convolutional neural networks. Two pretrained convolutional neural network architectures, GoogLeNet and ResNet18, were fine-tuned to classify KRas into active or inactive states based on these features. Across training regimes, atomic contact maps emerged as the most effective structural feature, whereas linearized mutual information outperformed covariance in capturing dynamical correlations relevant to allostery. Models achieved significant validation accuracy, with atomic contact maps yielding up to 90% accuracy. In conclusion, the findings suggest that integrating global structural rearrangements and correlated motion patterns with deep learning can reliably predict protein allosteric states, offering a promising framework for understanding allosteric regulation and developing targeted therapeutics.

Rajeshwar T., Rajitha [Oak Ridge National Laborato↗

Stereo Vision Based Terrain Mapping for Off-Road Autonomous Navigation

Successful off-road autonomous navigation by an unmanned ground vehicle (UGV) requires reliable perception and representation of natural terrain. While perception algorithms are used to detect driving hazards, terrain mapping algorithms are used to represent the detected hazards in a world model a UGV can use to plan safe paths. There are two primary ways to detect driving hazards with perception sensors mounted to a UGV: binary obstacle detection and traversability cost analysis. Binary obstacle detectors label terrain as either traversable or non-traversable, whereas, traversability cost analysis assigns a cost to driving over a discrete patch of terrain. In uncluttered environments where the non-obstacle terrain is equally traversable, binary obstacle detection is sufficient. However, in cluttered environments, some form of traversability cost analysis is necessary. The Jet Propulsion Laboratory (JPL) has explored both approaches using stereo vision systems. A set of binary detectors has been implemented that detect positive obstacles, negative obstacles, tree trunks, tree lines, excessive slope, low overhangs, and water bodies. A compact terrain map is built from each frame of stereo images. The mapping algorithm labels cells that contain obstacles as no-go regions, and encodes terrain elevation, terrain classification, terrain roughness, traversability cost, and a confidence value. The single frame maps are merged into a world map where temporal filtering is applied. In previous papers, we have described our perception algorithms that perform binary obstacle detection. In this paper, we summarize the terrain mapping capabilities that JPL has implemented during several UGV programs over the last decade and discuss some challenges to building terrain maps with stereo range data.

passive perception↗