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DOE OSTI2020

Internal structure of the San Jacinto fault zone at the Ramona Reservation, north of Anza, California, from dense array seismic data

SUMMARY We image the internal structure of the San Jacinto fault zone (SJFZ) near Anza, California, with seismic data recorded by two dense arrays (RA and RR) from ∼42 000 local and ∼180 teleseismic events occurring between 2012 and 2017. The RA linear array has short aperture (∼470 m long with 12 strong motion sensors) and recorded for the entire analysed time window, whereas the RR is a large three-component nodal array (97 geophones across a ∼2.4 km × 1.4 km area) that operated for about a month in September–October 2016. The SJFZ at the site contains three near-parallel surface traces F1, F2 and F3 from SW to NE that have accommodated several Mw > 6 earthquakes in the past 15 000 yr. Waveform changes in the fault normal direction indicate structural discontinuities that are consistent with the three fault surface traces. Relative slowness from local events and delay time analysis of teleseismic arrivals in the fault normal direction suggest a slower SW side than the NE with a core damage zone between F1 and F2. This core damage zone causes ∼0.05 s delay at stations RR26–31 in the teleseismic P arrivals compared with the SW-most station, and generates both P- and S-type fault zone trapped waves. Inversion of S trapped waves indicates the core damaged structure is ∼100 m wide, ∼4 km deep with a Q value of ∼20 and 40 per cent S-wave velocity reduction compared with bounding rocks. Fault zone head waves observed at stations SW of F3 indicate a local bimaterial interface that separates the locally faster NE block from the broad damage zone in the SW at shallow depth and merges with a deep interface that separates the regionally faster NE block from rocks to the SW with slower velocities at greater depth. The multiscale structural components observed at the site are related to the geological and earthquake rupture history at the site, and provide important information on the preferred NW propagation of earthquake ruptures on the San Jacinto fault.

Geochemistry & Geophysics↗

DOE OSTI2024

Evaluation of Saccadic Component Measure on Smooth Pursuit Tests

ABSTRACT Introduction Despite the advancement of eye-tracking technology for smooth pursuit (SP) eye movement evaluation, qualitative observation offers much information that is not captured by computers; hence, both objective and qualitative information should be utilized to evaluate SP. This study examined the consistency among our clinicians when evaluating SP using normal (N), grossly normal (GN), mildly abnormal (MA), and abnormal (AB) as classifications. We then evaluated the effect of combining GN and MA into a single subclinical (SUBC) category. We also evaluated the computerized percent saccade (PS) metric by determining its sensitivity and specificity in classifying SP. Materials and Methods Retrospective horizontal and vertical SP test videos and numerical data for 70 participants were obtained from the Neuro Kinetics Neuro-Otologic Test Center and de-identified. From this, eye-tracking videos, time plots of eye-tracking positional data, and tables of SP eye-tracking performance data were generated for 0.1, 0.3, and 0.5 Hz in both horizontal and vertical planes, totaling 6 tests per subject. Three clinicians rated each subject’s SP performance as N, GN, MA, or AB for a total of 6 ratings (3 frequencies, horizontal and vertical). This process was repeated using N, SUBC, and AB as rating categories. Clinicians also provided an overall SP rating for each plane as follows: AB if the results were abnormal for 2 or more frequencies tested. Alternatively, if fewer than 2 frequencies presented with a rating of AB, then an overall rating of MA, GN, or N was determined at the respective clinician’s discretion. Results When the 3 clinicians were tasked with classifying SP videos using 4 clinical categories, fair overall agreement was demonstrated. However, when MA and GN categories were combined into an SUBC category, the overall agreement for the 3 clinicians improved slightly for both horizontal SP (HSP) and vertical SP (VSP). This pattern of agreement did not differ considerably when comparing HSP versus VSP, and good consistency and reliability was observed across clinicians. Again, inter-rater consistency was smaller for VSP versus HSP despite the reduction in clinical categories. Cut-off values were generated for the PS metric and demonstrated good specificity and sensitivity when they were exceeded for 2 or more frequencies in a particular plane when evaluating a subject’s SP test. Conclusions

General & Internal Medicine↗

DOE OSTI2020

Observational constraints on the multiphase nature of outflows using large spectroscopic surveys at z ∼ 0

ABSTRACT Mass outflow rates and loading factors are typically used to infer the quenching potential of galactic-scale outflows. However, these generally rely on observations of a single gas phase that can severely underestimate the total ejected gas mass. To address this, we use observations of high mass (≥1010 M⊙), normal star-forming galaxies at z ∼ 0 from the MaNGA, xCOLD GASS, xGASS, and ALFALFA surveys and a stacking of Na d, Hα, CO(1–0), and H i 21 cm tracers with the aim of placing constraints on an average, total mass outflow rate, and loading factor. We find detections of outflows in both neutral and ionized gas tracers, with no detections in stacks of molecular or atomic gas emission. Modelling of the outflow components reveals velocities of |vNa d| = 131 km s−1 and |vHα| = 439 km s−1 and outflow rates of $\dot{M}_{\rm {Na\,\small{D}}}$ = 7.55 M⊙ yr−1 and $\dot{M}_{\text{H}\alpha }$ = 0.10 M⊙ yr−1 for neutral and ionized gas, respectively. Assuming a molecular/atomic outflow velocity of 200 km s−1, we derive upper limits of $\dot{M}_{\text{CO}}\lt 19.43$ M⊙ yr−1 and $\dot{M}_{\rm {H\,\small {I}}}\lt $ 26.72 M⊙ yr−1 for the molecular and atomic gas, respectively. Combining the detections and upper limits, we find average total outflow rates of $\dot{M}_{\text{tot}}\lesssim$27 M⊙ yr−1 and a loading factor of ηtot ≲ 6.39, with molecular gas likely contributing ≲72 per cent of the total mass outflow rate, and neutral and ionized gas contributing ∼28 and <1 per cent, respectively. Our results suggest that, to first order, a degree of quenching via ejective feedback could occur in normal galaxies when considering all gas phases, even in the absence of an active galactic nucleus.

Roberts-Borsani, G. W.↗

DOE OSTI2020

Stellar angular momentum distribution linked to galaxy morphology

ABSTRACT We study the spatially resolved stellar specific angular momentum j* in a high-quality sample of 24 Calar Alto Legacy Integral Field Area galaxies covering a broad range of visual morphology, accounting for stellar velocity and velocity dispersion. The shape of the spaxelwise probability density function of normalized s = j*/j*mean, PDF(s), deviates significantly from the near-universal initial distribution expected of baryons in a dark matter halo and can be explained by the expected baryonic effects in galaxy formation that remove and redistribute angular momentum. Further we find that the observed shape of the PDF(s) correlates significantly with photometric morphology, where late-type galaxies have a PDF(s) that is similar to a normal distribution, whereas early types have a strongly skewed PDF(s) resulting from an excess of low-angular momentum material. Galaxies that are known to host pseudo-bulges (bulge Sérsic index nb < 2.2) tend to have less skewed bulge PDF(s), with skewness (b1rb) ≲ 0.8. The PDF(s) encodes both kinematic and photometric information and appears to be a robust tracer of morphology. Its use is motivated by the desire to move away from traditional component-based classifications which are subject to observer bias, to classification on a galaxy’s fundamental (stellar mass and angular momentum) properties. In future, PDF(s) may also be useful as a kinematic decomposition tool.

Sweet, Sarah M.↗

DOE OSTI2020

The effect of non-linear mutual friction on pulsar glitch sizes and rise times

ABSTRACT Observations of pulsar glitches have the potential to provide constraints on the dynamics of the high density interior of neutron stars. However, to do so, realistic glitch models must be constructed and compared to the data. We take a step towards this goal by testing non-linear models for the mutual friction force, which is responsible for the exchange of angular momentum between the neutron superfluid and the observable normal component in a glitch. In particular, we consider a non-linear dependence of the drag force on the relative velocity between superfluid vortices and the normal component, in which the contributions of both kelvin and phonon excitations are included. This non-linear model produces qualitatively new features, and is able to reproduce the observed bimodal distribution of glitch sizes in the pulsar population. The model also suggests that the differences in size distributions in individual pulsars may be due to the glitches being triggered in regions with different pinning strengths, as stronger pinning leads to higher vortex velocities and a qualitatively different mutual friction coupling with respect to the weak pinning case. Glitches in pulsars that appear to glitch quasi-periodically with similar sizes may thus be due to the same mechanisms as smaller events in pulsars that have no preferred glitch size, but simply originate in stronger pinning regions, possibly in the core of the star.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Compact galaxies and the size–mass galaxy distribution from a colour-selected sample at 0.04 < z < 0.15 supplemented by ugrizYJHK photometric redshifts

ABSTRACT The size–mass galaxy distribution is a key diagnostic for galaxy evolution. Massive compact galaxies are potential surviving relics of a high-redshift phase of star formation. Some of these could be nearly unresolved in Sloan Digital Sky Survey (SDSS) imaging and thus not included in galaxy samples. To overcome this, a sample was selected from the combination of SDSS and UKIRT Infrared Deep Sky Survey (UKIDSS) photometry to r < 17.8. This was done using colour–colour selection, and then by obtaining accurate photometric redshifts (photo-z) using scaled flux matching (SFM). Compared to spectroscopic redshifts (spec-z), SFM obtained a 1σ scatter of 0.0125 with only 0.3 per cent outliers (|Δln (1 + z)| > 0.06). A sample of 163 186 galaxies was obtained with 0.04 < z < 0.15 over $2300\, {\rm deg}^2$ using a combination of spec-z and photo-z. Following Barro et al. log Σ1.5 = log M* − 1.5log r50, maj was used to define compactness. The spectroscopic completeness was 76 per cent for compact galaxies (log Σ1.5 > 10.5) compared to 92 per cent for normal-sized galaxies. This difference is primarily attributed to SDSS ‘fibre collisions’ and not the completeness of the main galaxy sample selection. Using environmental overdensities, this confirms that compact quiescent galaxies are significantly more likely to be found in high-density environments compared to normal-sized galaxies. By comparison with a high-redshift sample from 3D-HST, log Σ1.5 distribution functions show significant evolution, with this being a compelling way to compare with simulations such as EAGLE. The number density of compact quiescent galaxies drops by a factor of about 30 from z ∼ 2 to log (n/Mpc−3) = − 5.3 ± 0.4 in the SDSS–UKIDSS sample. The uncertainty is dominated by the steep cut off in log Σ1.5, which is demonstrated conclusively using this complete sample.

Baldry, Ivan K.↗

DOE OSTI2020

The Milky Way’s stellar streams and globular clusters do not align in a Vast Polar Structure

ABSTRACT There is increasing evidence that a substantial fraction of Milky Way satellite galaxies align in a rotationally supported plane of satellites, a rare configuration in cosmological simulations of galaxy formation. It has been suggested that other Milky Way substructures (namely young halo globular clusters and stellar/gaseous streams) similarly tend to align with this plane, accordingly dubbed the Vast Polar Structure (VPOS). Using systemic proper motions inferred from Gaia data, we find that globular cluster orbital poles are not clustered in the VPOS direction, though the population with the highest VPOS membership fraction is the young halo clusters (∼30 per cent). We additionally provide a current census of stellar streams, including new streams discovered using the Dark Energy Survey and Gaia data sets, and find that stellar stream normals are also not clustered in the direction of the VPOS normal. We also find that, based on orbit modelling, there is a likely association between NGC 3201 and the Gjöll stellar stream and that, based on its orbital pole, NGC 4147 is likely not a Sagittarius globular cluster. That the Milky Way’s accreted globular clusters and streams do not align in the same planar configuration as its satellites suggests that the plane of satellites is either a particularly stable orbital configuration or a population of recently accreted satellites. Neither of these explanations is particularly likely in light of other recent studies, leaving the plane of satellites problem as one of the more consequential open problems in galaxy formation and cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Measuring the thermal and ionization state of the low- z IGM using likelihood free inference

ABSTRACT We present a new approach to measure the power-law temperature density relationship $T=T_0 (\rho/ \bar{\rho })^{\gamma -1}$ and the UV background photoionization rate $\Gamma _{{{{\rm H\, {\small I}}}}{}}$ of the intergalactic medium (IGM) based on the Voigt profile decomposition of the Ly α forest into a set of discrete absorption lines with Doppler parameter b and the neutral hydrogen column density $N_{\rm H\, {\small I}}$. Previous work demonstrated that the shape of the $b-N_{{{{\rm H\, {\small I}}}}{}}$ distribution is sensitive to the IGM thermal parameters T0 and γ, whereas our new inference algorithm also takes into account the normalization of the distribution, i.e. the line-density dN/dz, and we demonstrate that precise constraints can also be obtained on $\Gamma _{{{{\rm H\, {\small I}}}}{}}$. We use density-estimation likelihood-free inference (DELFI) to emulate the dependence of the $b-N_{{{{\rm H\, {\small I}}}}{}}$ distribution on IGM parameters trained on an ensemble of 624 nyx hydrodynamical simulations at z = 0.1, which we combine with a Gaussian process emulator of the normalization. To demonstrate the efficacy of this approach, we generate hundreds of realizations of realistic mock HST/COS data sets, each comprising 34 quasar sightlines, and forward model the noise and resolution to match the real data. We use this large ensemble of mocks to extensively test our inference and empirically demonstrate that our posterior distributions are robust. Our analysis shows that by applying our new approach to existing Ly α forest spectra at z ≃ 0.1, one can measure the thermal and ionization state of the IGM with very high precision ($\sigma _{\log T_0} \sim 0.08$ dex, σγ ∼ 0.06, and $\sigma _{\log \Gamma _{{{{\rm H\, {\small I}}}}{}}} \sim 0.07$ dex).

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Chandra measurements of gas homogeneity and turbulence at intermediate radii in the Perseus Cluster

ABSTRACT We present a Chandra study of surface brightness fluctuations in the diffuse intracluster medium of the Perseus Cluster. Our study utilizes deep, archival imaging of the cluster core as well as a new mosaic of 29 short $\, 5\,$-ks observations extending in eight different directions out to radii of $r_{500} \sim 2.2\, r_{2500}$. Under the assumption that the distribution of densities at a given radius is log-normally distributed, two important quantities can be derived from the width of the log-normal density distribution on a given spatial scale: the density bias, that is equal to the square root of the clumping factor C; and the one-component turbulent velocity, vk,1D. We forward-model all contributions to the measured surface brightness, including astrophysical and particle background components, and account for the Poisson nature of the measured signal. Measuring the distribution of surface brightness fluctuations in 1 arcmin2 regions, spanning the radial range $0.3\rm {-}2.2\, r_{2500}$ ($7.8\rm {-}57.3\,$ arcmin), we find a small to moderate average density bias of around $3{{\ \rm per\ cent}}$ at radii below $1.6\, r_{2500}$. We also infer an average turbulent velocity at these radii of V1D < 400 km s−1. Direct confirmation of our results on turbulent velocities inferred from surface brightness fluctuations should be possible using the X-ray calorimeter spectrometers to be flown aboard the XRISM and Athena observatories.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Rotation curves and dynamical masses of MaNGA barred galaxies

In this paper we analyse a sample of 46 barred galaxies of MaNGA. Our goal is to investigate the stellar kinematics of these galaxies and obtain their rotation curves. Additionally, we aim to derive the total stellar and dynamical masses, as well as the maximum rotation velocity, in order to examine their distributions and scaling relations. Using the Pipe3D dataproducts publicly available we obtained the rotation curves, which were fitted considering two components of an axisymmetric Miyamoto–Nagai gravitational potential. We found a wide range of the maximum rotation velocities (117–340 ${\rm km\, s^{-1}}$), with a mean value of 200 ${\rm km\, s^{-1}}$. In addition we found that the total stellar and dynamical masses are in the range of log(M star /M ⊙ ) = 10.1−11.5, with a mean value of log(M star /M ⊙ ) = 10.8, and log(M dyn /M ⊙ ) = 10.4−12.0, with a mean value of log(M dyn /M ⊙ ) = 11.1, respectively. We found a strong correlation between dynamical mass and maximum velocity, between maximum velocity and magnitude, and between stellar mass and maximum velocity. According to these results, barred galaxies exhibit similar behaviour to that of normal spiral galaxies with respect to these relations, as well as in terms of the distribution of their dynamical mass and maximum rotation velocity. However, we found that the distribution of stellar masses of barred galaxies is statistically different from other samples including non-barred galaxies. Finally, analysing the galaxies that show nuclear activity, we find no difference with the rotation curves of normal galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Rates and properties of Type Ia supernovae in galaxy clusters within the dark energy survey

We identify 66 photometrically classified Type Ia supernovae (SNe Ia) from the Dark Energy Survey (DES) that have occurred within red-sequence selected galaxy clusters. We compare light-curve and host galaxy properties of the cluster SNe to 1024 DES SNe Ia located in field galaxies, the largest comparison of two such samples at high redshift (z > 0.1). We find that cluster SN light curves decline faster than those in the field (97.7 per cent confidence). However, when limiting these samples to host galaxies of similar colour and mass, there is no significant difference in the SN light-curve properties. Motivated by previous detections of a higher-normalized SN Ia delay-time distribution in galaxy clusters, we measure the intrinsic rate of SNe Ia in cluster and field environments. We find the average ratio of the SN Ia rate per galaxy between high-mass (⁠|$10\le \log \mathrm{(\mathit{ M}_{*}/{\rm \mathit{ M}}_{\odot })} \le 11.25$|⁠) cluster and field galaxies to be 0.594 ± 0.068. This difference is mass-dependent, with the ratio declining with increasing mass, which suggests that the stellar populations in cluster hosts are older than those in field hosts. We show that the mass-normalized rate (or SNe per unit mass) in massive–passive galaxies is consistent between cluster and field environments. Additionally, both of these rates are consistent with rates previously measured in clusters at similar redshifts. We conclude that in massive–passive galaxies, which are the dominant hosts of cluster SNe, the cluster delay-time distribution is comparable to the field.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

The rate of extreme coronal line emitting galaxies in the Sloan Digital Sky Survey and their relation to tidal disruption events

High-ionization iron coronal lines (CLs) are a rare phenomenon observed in galaxy and quasi-stellar object spectra that are thought to be created by high-energy emission from active galactic nuclei and certain types of transients. In cases known as extreme coronal line emitting galaxies (ECLEs), these CLs are strong and fade away on a time-scale of years. The most likely progenitors of these variable CLs are tidal disruption events (TDEs), which produce sufficient high-energy emission to create and sustain the CLs over these time-scales. To test the possible connection between ECLEs and TDEs, we present the most complete variable ECLE rate calculation to date and compare the results to TDE rates from the literature. To achieve this, we search for ECLEs in the Sloan Digital Sky Survey (SDSS). We detect sufficiently strong CLs in 16 galaxies, more than doubling the number previously found in SDSS. Using follow-up spectra from the Dark Energy Spectroscopic Instrument and Gemini Multi-Object Spectrograph, Wide-field Infrared Survey Explorer mid-infrared observations, and Liverpool Telescope optical photometry, we find that none of the nine new ECLEs evolve in a manner consistent with that of the five previously discovered variable ECLEs. Using this sample of five variable ECLEs, we calculate the galaxy-normalized rate of variable ECLEs in SDSS to be $R_\mathrm{G}=3.6~^{+2.6}_{-1.8}~(\mathrm{statistical})~^{+5.1}_{-0.0}~(\mathrm{systematic})\times 10^{-6}~\mathrm{galaxy}^{-1}~\mathrm{yr}^{-1}$. The mass-normalized rate is $R_\mathrm{M}=3.1~^{+2.3}_{-1.5}~(\mathrm{statistical})~^{+4.4}_{-0.0}~(\mathrm{systematic})\times 10^{-17}~\mathrm{M_\odot ^{-1}}~\mathrm{yr}^{-1}$ and the volumetric rate is $R_\mathrm{V}=7~^{+20}_{-5}~(\mathrm{statistical})~^{+10}_{-0.0}~(\mathrm{systematic})\times 10^{-9}~\mathrm{Mpc}^{-3}~\mathrm{yr}^{-1}$. Our rates are one to two orders of magnitude lower than TDE rates from the literature, which suggests that only 10–40 per cent of all TDEs produce variable ECLEs. Additional uncertainties in the rates arising from the structure of the interstellar medium have yet to be included.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Spatially resolved molecular gas properties of host galaxy of Type I superluminous supernova SN 2017egm

Abstract We present the results of CO(1–0) observations of the host galaxy of a Type I superluminous supernova (SLSN-I), SN 2017egm, one of the closest SLSNe-I at z = 0.03063, by using the Atacama Large Millimeter/submillimeter Array. The molecular gas mass of the host galaxy is Mgas = (4.8 ± 0.3) × 109 M⊙, placing it on the sequence of normal star-forming galaxies in an Mgas–star-formation rate (SFR) plane. The molecular hydrogen column density at the location of SN 2017egm is higher than that of the Type II SN PTF10bgl, which is also located in the same host galaxy, and those of other Type II and Ia SNe located in different galaxies, suggesting that SLSNe-I have a preference for a dense molecular gas environment. On the other hand, the column density at the location of SN 2017egm is comparable to those of Type Ibc SNe. The surface densities of molecular gas and the SFR at the location of SN 2017egm are consistent with those of spatially resolved local star-forming galaxies and follow the Schmidt–Kennicutt relation. These facts suggest that SLSNe-I can occur in environments with the same star-formation mechanism as in normal star-forming galaxies.

Hatsukade, Bunyo (ORCID:0000000164698725)↗

DOE OSTI2021

LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis

Cytoplasmic lipid droplets (LDs) are evolutionarily conserved organelles that store neutral lipids and play critical roles in plant growth, development, and stress responses. However, the molecular mechanisms underlying their biogenesis at the endoplasmic reticulum (ER) remain obscure. Here we show that a recently identified protein termed LD-associated protein [LDAP]-interacting protein (LDIP) works together with both endoplasmic reticulum-localized SEIPIN and the LD-coat protein LDAP to facilitate LD formation in Arabidopsis thaliana. Heterologous expression in insect cells demonstrated that LDAP is required for the targeting of LDIP to the LD surface, and both proteins are required for the production of normal numbers and sizes of LDs in plant cells. LDIP also interacts with SEIPIN via a conserved hydrophobic helix in SEIPIN and LDIP functions together with SEIPIN to modulate LD numbers and sizes in plants. Further, the co-expression of both proteins is required to restore normal LD production in SEIPIN-deficient yeast cells. These data, combined with the analogous function of LDIP to a mammalian protein called LD Assembly Factor 1, are discussed in the context of a new model for LD biogenesis in plant cells with evolutionary connections to LD biogenesis in other eukaryotes.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

A temperature-sensitive FERONIA mutant allele that alters root hair growth

Abstract In plants, root hairs undergo a highly polarized form of cell expansion called tip-growth, in which cell wall deposition is restricted to the root hair apex. In order to identify essential cellular components that might have been missed in earlier genetic screens, we identified conditional temperature-sensitive (ts) root hair mutants by ethyl methanesulfonate mutagenesis in Arabidopsis thaliana. Here, we describe one of these mutants, feronia-temperature sensitive (fer-ts). Mutant fer-ts seedlings were unaffected at normal temperatures (20°C), but failed to form root hairs at elevated temperatures (30°C). Map based-cloning and whole-genome sequencing revealed that fer-ts resulted from a G41S substitution in the extracellular domain of FERONIA (FER). A functional fluorescent fusion of FER containing the fer-ts mutation localized to plasma membranes, but was subject to enhanced protein turnover at elevated temperatures. While tip-growth was rapidly inhibited by addition of rapid alkalinization factor 1 (RALF1) peptides in both wild-type and fer-ts mutants at normal temperatures, root elongation of fer-ts seedlings was resistant to added RALF1 peptide at elevated temperatures. Additionally, at elevated temperatures fer-ts seedlings displayed altered reactive oxygen species (ROS) accumulation upon auxin treatment and phenocopied constitutive fer mutant responses to a variety of plant hormone treatments. Molecular modeling and sequence comparison with other Catharanthus roseus receptor-like kinase 1L (CrRLK1L) receptor family members revealed that the mutated glycine in fer-ts is highly conserved, but is not located within the recently characterized RALF23 and LORELI-LIKE-GLYCOPROTEIN 2 binding domains, perhaps suggesting that fer-ts phenotypes may not be directly due to loss of binding to RALF1 peptides.

Plant Sciences↗

DOE OSTI2022

Cellulose synthesis complexes are homo-oligomeric and hetero-oligomeric in Physcomitrium patens

The common ancestor of seed plants and mosses contained homo-oligomeric cellulose synthesis complexes (CSCs) composed of identical subunits encoded by a single CELLULOSE SYNTHASE (CESA) gene. Seed plants use different CESA isoforms for primary and secondary cell wall deposition. Both primary and secondary CESAs form hetero-oligomeric CSCs that assemble and function in planta only when all the required isoforms are present. The moss Physcomitrium (Physcomitrella) patens has seven CESA genes that can be grouped into two functionally and phylogenetically distinct classes. Previously, we showed that PpCESA3 and/or PpCESA8 (class A) together with PpCESA6 and/or PpCESA7 (class B) form obligate hetero-oligomeric complexes required for normal secondary cell wall deposition. Here, we show that gametophore morphogenesis requires a member of class A, PpCESA5, and is sustained in the absence of other PpCESA isoforms. Further, PpCESA5 also differs from the other class A PpCESAs as it is able to self-interact and does not co-immunoprecipitate with other PpCESA isoforms. These results are consistent with the hypothesis that homo-oligomeric CSCs containing only PpCESA5 subunits synthesize cellulose required for gametophore morphogenesis. Analysis of mutant phenotypes also revealed that, like secondary cell wall deposition, normal protonemal tip growth requires class B isoforms (PpCESA4 or PpCESA10), along with a class A partner (PpCESA3, PpCESA5, or PpCESA8). Thus, P. patens contains both homo-oligomeric and hetero-oligomeric CSCs.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Pyruvate, phosphate dikinase regulatory protein impacts light response of C4 photosynthesis in Setaria viridis

In C4 plants, the pyruvate (Pyr), phosphate dikinase regulatory protein (PDRP) regulates the activity of the C4 pathway enzyme Pyr, phosphate dikinase (PPDK) in a light-/dark-dependent manner. The importance of this regulatory action to C4 pathway function and overall C4 photosynthesis is unknown. To resolve this question, we assessed in vivo PPDK phospho-regulation and whole leaf photophysiology in a CRISPR–Cas9 PDRP knockout (KO) mutant of the NADP-ME C4 grass green millet (Setaria viridis). PDRP enzyme activity was undetectable in leaf extracts from PDRP KO lines. Likewise, PPDK phosphorylated at the PDRP-regulatory Thr residue was immunologically undetectable in leaf extracts. PPDK enzyme activity in rapid leaf extracts was constitutively high in the PDRP KO lines, irrespective of light or dark pretreatment of leaves. Gas exchange analysis of net CO2 assimilation revealed PDRP KO leaves had markedly slower light induction kinetics when leaves transition from dark to high-light or low-light to high-light. In the initial 30 min of the light induction phase, KO leaves had an ~15% lower net CO2 assimilation rate versus the wild-type (WT). Despite the impaired slower induction kinetics, we found growth and vigor of the KO lines to be visibly indistinguishable from the WT when grown in normal air and under standard growth chamber conditions. However, the PDRP KO plants grown under a fluctuating light regime exhibited a gradual multi-day decline in Fv/Fm, indicative of progressive photosystem II damage due to the absence of PDRP. Collectively, our results demonstrate that one of PDRP’s functions in C4 photosynthesis is to ensure optimal photosynthetic light induction kinetics during dynamic changes in incident light.

Plant Sciences↗

DOE OSTI2024

Putative rhamnogalacturonan-II glycosyltransferase identified through callus gene editing bypasses embryo lethality

Rhamnogalacturonan II (RG-II) is a structurally complex and conserved domain of the pectin present in the primary cell walls of vascular plants. Borate crosslinking of RG-II is required for plants to grow and develop normally. Mutations that alter RG-II structure also affect crosslinking and are lethal or severely impair growth. Thus, few genes involved in RG-II synthesis have been identified. Here we developed a method to generate viable loss-of-function Arabidopsis (Arabidopsis thaliana) mutants in callus tissue via CRISPR/Cas9-mediated gene editing. We combined this with a candidate gene approach to characterize the male gametophyte defective 2 (MPG2) gene that encodes a putative family GT29 glycosyltransferase. Plants homozygous for this mutation do not survive. We showed that in the callus mutant cell walls, RG-II does not crosslink normally because it lacks 3-deoxy-D-manno-octulosonic acid (Kdo) and thus cannot form the α-L-Rhap-(1→5)-α-D-kdop-(1→ sidechain. We suggest that MGP2 encodes an inverting RG-II CMP-β-Kdo transferase (RCKT1). Our discovery provides further insight into the role of sidechains in RG-II dimerization. Our method also provides a viable strategy for further identifying proteins involved in the biosynthesis of RG-II.

59 BASIC BIOLOGICAL SCIENCES↗