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At least 793 records · Page 44

Less is more: Sampling chemical space with active learning

We present the development of accurate and transferable machine learning (ML) potentials for predicting molecular energetics is a challenging task. The process of data generation to train such ML potentials is a task neither well understood nor researched in detail. In this work, we present a fully automated approach for the generation of datasets with the intent of training universal ML potentials. It is based on the concept of active learning (AL) via Query by Committee (QBC), which uses the disagreement between an ensemble of ML potentials to infer the reliability of the ensemble’s prediction. QBC allows the presented AL algorithm to automatically sample regions of chemical space where the ML potential fails to accurately predict the potential energy. AL improves the overall fitness of ANAKIN-ME (ANI) deep learning potentials in rigorous test cases by mitigating human biases in deciding what new training data to use. AL also reduces the training set size to a fraction of the data required when using naive random sampling techniques. To provide validation of our AL approach, we develop the COmprehensive Machine-learning Potential (COMP6) benchmark (publicly available on GitHub) which contains a diverse set of organic molecules. Active learning-based ANI potentials outperform the original random sampled ANI-1 potential with only 10% of the data, while the final active learning-based model vastly outperforms ANI-1 on the COMP6 benchmark after training to only 25% of the data. Finally, we show that our proposed AL technique develops a universal ANI potential (ANI-1x) that provides accurate energy and force predictions on the entire COMP6 benchmark. Finally, this universal ML potential achieves a level of accuracy on par with the best ML potentials for single molecules or materials, while remaining applicable to the general class of organic molecules composed of the elements CHNO.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Enhanced Detection of Primary Biological Aerosol Particles Using Machine Learning and Single-Particle Measurement

Accurately identifying primary biological aerosol particles (PBAPs) using analytical techniques poses inherent challenges due to their resemblance to other atmospheric carbonaceous particles. Here, we present a study of an enhanced method for detecting PBAPs by combining single-particle measurement with advanced supervised machine learning (SML) techniques. We analyzed ambient particles from a variety of environments and lab-generated standards, focusing on chemical composition for traditional rule-based and clustering approaches and incorporating morphological features into the SML approaches, neural networks and XGBoost, for improved accuracy. This study demonstrates that SML methods outperform traditional methods in quantifying PBAPs, achieving significant improvements in precision, recall, F1-score, and accuracy, leading to an increased number of detected PBAPs by at least 19%. The adaptability of the proposed XGBoost-based SML model is showcased in comparison to traditional methods in categorizing PBAPs for blind data sets from different geographical locations. Two field case studies were investigated, over agricultural land and Amazonia rain forest, representing relatively low and high concentrations of PBAPs, respectively, where XGBoost consistently detected up to 3.5 times more PBAPs than traditional methods. Precise detection of PBAPs in the atmosphere could significantly improve the prediction of climatic impacts by them.

42 ENGINEERING↗

Accelerated alloy discovery using synthetic data generation and data mining

The search for new alloys with improved properties is never ending with infinite combinations and amounts of alloying elements in the alloy. Advancements in machine learning have made navigating this enormous search space feasible. However, training the machine learning models and tuning their hyper-parameters to make accurate predictions can be time-consuming and often require high-performance computing resources. Furthermore, the quality of the predictions depend on the availability of sufficient training data. Here, we present a generic approach to accelerate alloy discovery by coupling high throughput CALPHAD calculations, synthetic data generation, and data mining. Finally, as a demonstration of the approach, we design super bainitic steels that form bainite at 200 C in lower transformation times.

36 MATERIALS SCIENCE↗

Automated experimental design of safe rampdowns via probabilistic machine learning

Abstract Typically the rampdown phase of a shot consists of a decrease in current and injected power and optionally a change in shape, but there is considerable flexibility in the rate, sequencing, and duration of these changes. On the next generation of tokamaks it is essential that this is done safely as the device could be damaged by the stored thermal and electromagnetic energy present in the plasma. This works presents a procedure for automatically choosing experimental rampdown designs to rapidly converge to an effective rampdown trajectory. This procedure uses probabilistic machine learning methods paired with acquisition functions taken from Bayesian optimization. In a set of 2022 experiments at DIII-D, the rampdown designs produced by our method maintained plasma control down to substantially lower current and energy levels than are typically observed. The actions predicted by the model significantly improved as the model was able to explore over the course of the experimental campaign.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Deep learning for electron and scanning probe microscopy: From materials design to atomic fabrication

Machine learning and artificial intelligence (ML/AI) are rapidly becoming an indispensable part of physics research, with applications ranging from theory and materials prediction to high-throughput data analysis. In parallel, the recent successes in applying ML/AI methods for autonomous systems from robotics through self-driving cars to organic and inorganic synthesis are generating enthusiasm for the potential of these techniques to enable automated and autonomous experiment in imaging. Here, we discuss recent progress in application of machine learning methods in scanning transmission electron microscopy and scanning probe microscopy, from applications such as data compression and exploratory data analysis to physics learning to atomic fabrication.

36 MATERIALS SCIENCE↗

Transformer quantum state: A multipurpose model for quantum many-body problems

Here, inspired by the advancements in large language models based on transformers, we introduce the transformer quantum state (TQS): a versatile machine learning model for quantum many-body problems. In sharp contrast to Hamiltonian/task specific models, TQS can generate the entire phase diagram, predict field strengths with experimental measurements, and transfer such a knowledge to new systems it has never been trained on before, all within a single model. With specific tasks, fine-tuning the TQS produces accurate results with small computational cost. Versatile by design, TQS can be easily adapted to new tasks, thereby pointing towards a general-purpose model for various challenging quantum problems.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Probabilistic Forecasting of Generators Startups and Shutdowns in the MISO System Based on Random Forest

Solving security constrained unit commitment (SCUC) problems to plan an economical generation schedule for day-head electricity market has been an important research topic in recent years. Mixed integer programming method (MIP), the-state-of-art approach for solving SCUC problem, is known computationally hard when the number of binary status variables is large. In this paper, a machine learning-based algorithm - random forest (RF), was applied to forecast the startups (SU) and shutdowns (SD) hours of generators, based on historical hourly system condition observations in the Midcontinent Independent System Operator (MISO) system. The main purpose is to reduce the number of binary status variables, by fixing the SU/SD hours to a narrow range of high confidence. This would significantly reduce the size of the decision space, and therefore speed up SCUC solutions with reduced uncertainty.

Lin, Xinming↗

Safety Assurance of Software and Machine Learning Development for Nuclear Instrumentation and Controls

Digital instrumentation and control (DI&C) systems monitor and control parameters in nuclear power plants. Ensuring their safety is a critical part of ensuring overall plant safety. Nuclear power plant licensing generates thousands of safety documents that could be organized more effectively using a safety assurance case (SAC). We conducted a literature survey of SACs and created a SAC framework for DI&C software using Goal Structuring Notation (GSN). This framework focuses on four software development processes: management & assurance, pre-developed software (PDS) qualification, the Software Development Life Cycle (SDLC), and the Machine Learning Development Life Cycle (MLDLC). We organized our framework using a novel level structure that can be applied to other SACs to improve their clarity. Finally, we demonstrate how our framework can be incorporated as part of a SAC for a larger reactor system.

46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗

Optimizing enzymes for plastic upcycling using machine learning design and high throughput experiments

Plastic use is ubiquitous in the modern world, and polyethylene terephthalate (PET) is one of the most abundantly produced plastics (and the most highly produced polyester), with ~65 million metric tons manufactured annually. To the consumer, PET is likely most recognizable as the plastic used to make beverage bottles. Like many plastics, traditional mechanical or chemical means of PET deconstruction and upcycling are costly and inefficient. Because of these challenges, recycled plastic is generally of lower quality and is more expensive to produce than virgin plastic derived from petroleum. Ultimately, this results in most plastic ending up as waste. We view plastic waste as an underutilized resource which, with the development of more efficient and high-quality recycling processes, could (1) generate significant economic value while (2) decreasing petroleum usage and greenhouse gas emissions, as well as (3) minimizing its negative environmental and health impacts. Biocatalytic recycling, or biomanufacturing the basic building blocks of new plastic from plastic waste, is a promising approach to plastic reuse that complements existing recycling technologies. Recently, biological enzymes capable of breaking down PET have garnered significant attention as an attractive means of dealing with the plastic problem. These enzymes are currently undergoing pilot studies for implementation in industrial-scale enzyme-based recycling. However, there are significant limitations to current enzymes, including the need to perform costly pre-processing of the plastic waste before the enzymes are able to work. Further optimization of these enzymes is necessary to make these technologies competitive, and ultimately incentivise industry-wide adoption of this biology-based green recycling technology. n this work we demonstrate a means to design and generate performant biological enzymes, capable of efficiently deconstructing plastic waste. Specifically, we applied recent advances in artificial intelligence, machine learning, and statistical analysis to design new versions and discover natural enzymes capable of breaking down PET. We focused on optimizing key properties that are important for industrial-scale enzymatic recycling such as pH and thermotolerance. Normal testing of enzymatic plastic-deconstruction is extremely labor intensive and so through this work we also developed a robotic-assisted experimental pipeline capable of characterizing thousands of candidate enzymes. The results of this iterative, AI-guided, multi-discipline approach have led to increases in enzymatic breakdown of over 150X over starting enzymes. This work supports the rapidly developing and transformative field of biocatalytic solutions to environmental problems beyond the discovery and predictive understanding of enzymes for polymer recycling, and has wide implications for tackling numerous energy problems such as carbon capture and fixation (e.g., engineering carbon monoxide dehydrogenase and the rubisco-pathway), biomining (e.g., design of lanthanide-binding proteins) and biomanufacturing (e.g., lignin-deconstruction enzymes).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Communication-Avoiding and Memory-Constrained Sparse Matrix-Matrix Multiplication at Extreme Scale

Sparse matrix-matrix multiplication (SpGEMM) is a widely used kernel in various graph, scientific computing and machine learning algorithms. In this paper, we consider SpGEMMs performed on hundreds of thousands of processors generating trillions of nonzeros in the output matrix. Distributed SpGEMM at this extreme scale faces two key challenges: (1) high communication cost and (2) inadequate memory to generate the output. Furthermore, we address these challenges with an integrated communication-avoiding and memory-constrained SpGEMM algorithm that scales to 262,144 cores (more than 1 million hardware threads) and can multiply sparse matrices of any size as long as inputs and a fraction of output fit in the aggregated memory. As we go from 16,384 cores to 262,144 cores on a Cray XC40 supercomputer, the new SpGEMM algorithm runs 10x faster when multiplying large-scale protein-similarity matrices.

97 MATHEMATICS AND COMPUTING↗

Usable Data Abstractions for Next-Generation Scientific Workflows

Data- and computationally-intensive scientific research, such as numerical simulations and inversions or the training of large neural networks in machine learning applications, that are well suited for HPC environments also often require expert insight and evaluation throughout the computation which can be greatly facilitated with the use of interactive computing tools, such as those in the Jupyter ecosystem. HPC workflows and interactive workflows are typically treated as orthogonal, however, the next generation of research will require both. The first challenge we face in this project is thus designing the right level of abstractions to allow interactive capabilities in the JupyterLab environment to allow the working scientist to flexibly explore and query their data at multiple levels, with a minimal amount of customization required of the underlying optimized codes. In addition to these questions regarding the high-level representation of data for interactive use in HPC, we tackled two additional issues that are part of the entire lifecycle of research and that become particularly acute in HPC contexts: how to improve the experience of interfacing with the HPC system's scheduling environment for a scientist focused on exploratory questions, and how can that scientist then best share the results of their work with others in a self-contained, reproducible manner.

97 MATHEMATICS AND COMPUTING↗

Group Structure Machine Learning Proposal

Nuclear data is the linchpin underwriting several fundamental capabilities and mission needs at LANL. New techniques such as machine learning can be brought to bear to solve old problems such as multigroup cross-section accuracy. In neutron transport, generating multigroup cross sections is a complex and arcane task, but a crucial one, as accurate solutions require appropriate cross sections. There are two key challenges when generating multigroup cross sections: (1) choosing an accurate weight function, and (2) choosing appropriate energy boundaries. Often, energy boundaries are chosen using “expert judgment” that is not documented and is difficult to replicate. The long-standing Los Alamos 30-group structure has been in use since at least 1969 and is still in use today. Simplistic attempts over the years since to improve on the 30-group structure have been met with limited success. Machine learning algorithms would enable the selection of appropriate, problem-dependent group boundaries without an inordinate investment of scientist time. We will develop workflows and tools to enable these improved group boundary choices, which will reduce uncertainty and increase predictive capability of neutron-transport applications at LANL.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Machine learning at the edge to improve in-field safeguards inspections

Artificial intelligence (AI) and machine learning (ML) are near-ubiquitous in day-to-day life; from cars with automated driver-assistance, recommender systems, generative content platforms, and large language chatbots. Implementing AI as a tool for international safeguards could significantly decrease the burden on safeguards inspectors and nuclear facility operators. The use of AI would allow inspectors to complete their in-field activities quicker, while identifying patterns and anomalies and freeing inspectors to focus on the uniquely human component of inspections. Sandia National Laboratories has spent the past two and a half years developing on-device machine learning to develop both a digital and robotic assistant. This combined platform, which we term inspecta, has numerous on-device machine learning capabilities that have been demonstrated at the laboratory scale. Here this work describes early successes implementing AI/ML capabilities to reduce the burden of tedious inspector tasks such as seal examination, information recall, note taking, and more.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

A machine-learning-aided data recovery approach for predicting multi-material thermal behaviors in advanced test reactor capsules

Instrumented experiments conducted at test reactors are essential to the deployment of new advanced reactor systems. Designing new experiments and generating data on specific reactor conditions require significant investments in terms of both time and cost. Finite element analysis software can be used to create high-fidelity models of experiment environments in order to support the actual experiments, but computation time remains a concern in terms of applying outcomes to real-time usage of data (e.g., a digital twin [DT]). Here, the present research proposes a machine-learning (ML) aided approach to making temperature and displacement predictions based on the thickness of the outer gas gap on the experimental capsule used for in-pile demonstration of a novel new thermal conductivity probe in the Advanced Test Reactor (ATR). This capsule consisted of U10Zr fuel, a rodlet, sodium, and inner and outer capsules. Gas gaps existed between the fuel and the rodlet, and between the inner and the outer capsule. The learning data pertained to an experimental capsule's radial distributions of temperature and displacement, as obtained based on Abaqus and the physical features. For the first step of ML sequence, the temperature was predicted using three positional parameters. Next, the displacement was predicted using seven additional parameters. Each physical feature was normalized in order to be both nondimensional and standardized. The temperature and displacement predictions showed good agreement with the simulation results in all cases involving interpolation and extrapolation. Furthermore, data similarity enhancement increased the similarity between the training and the target data, thereby increasing the predictive accuracy of the ML models. In certain extrapolation cases involving limited original ML model accuracy, data similarity enhancement and data recovery was able to somewhat improve this accuracy.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Additive Manufacturing – A New Challenge for Automation and Robotics

Additive manufacturing (AM) is a rapidly growing technology descended from the first stereolithography systems. AM describes a variety of material deposition technologies for forming objects in a digital manner layer-by-layer under computer control. Now commonly known as 3D printing, AM quickly branched out into several key directions – material extrusion, sheet lamination, direct energy deposition, vat polymerization, powder bed fusion, binder jetting, and material jetting. The common factor in all AM branches is a foundation in robotics and automation. While most of the mechanical 3D printing structures are based on simple gantry systems, there are Gough-Stewart platforms and, more recently, six or more DoF manipulator-based systems that have been developed. Currently available commercial systems are based on open-loop control with minimum sensing capabilities; the latest systems in development are starting to take advantage of complex feedback loops and layers of advanced sensing and data logging. The Manufacturing Demonstration Facility of Oak Ridge National Laboratory is leading the efforts in applying advanced robotics in the creation of large-scale 3D printers. The recent demonstration of an additively manufactured excavator at the CONEXPO 2017 exhibition in Las Vegas showed that the use of cutting edge robotics and automation is essential for the next generation of additive systems. The future of AM will heavily rely on advanced robotics, machine learning, and the internet of things. This paper summarizes progress in AM; presents the practical aspects, challenges, and lessons learned in developing robotic-based AM systems; and outlines the needs and future directions of robotics for AM.

Nycz, Andrzej↗

Evaluation of normalization strategies for mass spectrometry-based multi-omics datasets

Introduction Data normalization is crucial for multi-omics integration, reducing systematic errors and maximizing the likelihood of discovering true biological variation. Most studies assess normalization for a single omics type or use datasets from separate experiments. Few address time-course data, where normalization might bias temporal differentiation. In this study, we compared common normalization methods and a machine learning approach, Systematical Error Removal using Random Forest (SERRF), using multi-omics datasets generated from the same experiment—even from the same cell lysate. Objectives To develop a straightforward process to assess normalization effects and identify the most robust methods across multi-omics datasets. Methods We analyzed metabolomics, lipidomics, and proteomics datasets from primary human cardiomyocytes and motor neurons exposed to acetylcholine-active compounds over time. Normalization effectiveness was evaluated based on improvement in QC features consistency and observing the change in treatment and time-related variance. Results Probabilistic Quotient Normalization (PQN) and Locally Estimated Scatterplot Smoothing (LOESS) QC were identified as optimal for metabolomics and lipidomics, while PQN, Median, and LOESS normalization excelled for proteomics. These methods consistently enhanced QC feature consistency in metabolomics and lipidomics, and preserved time-related variance or treatment-related variance in proteomics, demonstrating their effectiveness and robustness. SERRF normalization, applied only to metabolomics in this study, outperformed other methods in some datasets but inadvertently masked treatment-related variance in others. Conclusion Our evaluation identified PQN and LoessQC as the top methods for metabolomics and lipidomics, and PQN, Median, and Loess normalization for proteomics, in multi-omics integration in a temporal study.

60 APPLIED LIFE SCIENCES↗

Machine learning surrogates for ion energy–angle distributions in thermal and RF plasma sheaths

Ion energy–angle distributions (IEADs) at material surfaces are a critical input for plasma–material interaction (PMI) studies in fusion devices, yet they are computationally expensive to obtain using particle-in-cell (PIC) simulations. In this work, we develop a machine learning surrogate based on a deep deconvolutional neural network (DDeCNN) trained on large databases generated with the hPIC2 code. The surrogate is capable of reconstructing IEADs from sheath parameters for both thermal and radio-frequency (RF) plasmas, including cases with multiple ion species. Across thousands of test cases, the model achieves high accuracy, with over 97 % of predictions classified as good or average based on standard error metrics (MAE, MSE, L2). Even in the more challenging RF and multi-species regimes, the surrogate reliably captures the multi-peak structure of PIC results. Once trained, the surrogate produces IEADs in milliseconds on a common workstation, yielding speedups of six to seven orders of magnitude compared with running a full PIC simulation. This computational gain enables dense parameter scans and direct coupling of IEAD predictions with PMI and erosion models on whole-device scales in fusion-relevant conditions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗