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At least 793 records · Page 44

Integration of Open-Source URBANopt and Dragonfly Energy Modeling Capabilities into Practitioner Workflows for District-Scale Planning and Design

High-performance districts and communities offer opportunities for reducing energy use, emissions, and costs, and can be instrumental in helping cities achieve their climate goals. The design of such communities requires identification of opportunities early on and their re-evaluation throughout the planning process. There is a need for energy modeling tools that connect 3D Computer-Aided Design (CAD) platforms to simulation engines, enabling detailed energy analysis of districts within the workflows and tools used by practitioners. This paper introduces the Dragonfly and URBANoptTM combined toolset that supports the creation of urban models from a range of geometry formats typically used by designers and planners, and provides an integrated pathway to simulate district-scale energy systems. The toolset is piloted by a global architecture and master planning firm to evaluate several key urban-scale technical questions for the design of a district in Chicago. The findings indicate that, while energy savings can be achieved through traditional architectural studies and enhancements to individual building efficiency, the modeling toolset helps identify additional savings and insights that can be achieved when considering district-scale energy systems. Finally, this study demonstrates how the Dragonfly/URBANopt toolset can integrate with master planning workflows, thereby enabling an iterative performance-based design process.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Evaluating Modern GPU Interconnect: PCIe, NVLink, NV-SLI, NVSwitch and GPUDirect

High performance multi-GPU computing becomes an inevitable trend due to the ever-increasing demand on computation capability in emerging domains such as deep learning, big data and planet-scale simulations. However, the lack of deep understanding on how modern GPUs can be connected and the real impact of state-of-the-art interconnect technology on multi-GPU application performance become a hurdle. In this paper, we fill the gap by conducting a thorough evaluation on five latest types of modern GPU interconnects: PCIe, NVLink-V1, NVLink-V2, NVLink-SLI and NVSwitch, from six high-end servers and HPC platforms: NVIDIA P100-DGX-1, V100-DGX-1, DGX-2, OLCF’s SummitDev and Summit supercomputers, as well as an SLI-linked system with two NVIDIA Turing RTX-2080 GPUs. Based on the empirical evaluation, we have observed four new types of GPU communication network NUMA effects: three are triggered by NVLink’s topology, connectivity and routing, while one is caused by PCIe chipset design issue. These observations indicate that, for a multi-GPU application running in a multi-GPU node, choosing the right GPU combination can impose considerable impact on GPU communication efficiency, as well as an application’s overall performance. Our evaluation can be leveraged in building practical multi-GPU performance models, which are vital for GPU task allocation, scheduling and migration in a shared environment (e.g., AI cloud and HPC centers), as well as communication-oriented performance tuning.

Performance Evaluation, GPU, Interconnect, NUMA, P↗

Regional techno-economic and life-cycle analysis of the pyrolysis-bioenergy-biochar platform for carbon-negative energy

This study investigates the sensitivity of greenhouse gas (GHG) emissions and the minimum fuel selling price for a 2000 metric ton day –1 integrated pyrolysis–bioenergy–biochar platform with respect to the biorefinery location and biomass types. The regional techno–economic and life–cycle analysis is evaluated in three US counties using representative crops: rice in Glenn County (California), corn in Hamilton County (Iowa), and peanuts in Jackson County (Florida). We evaluate the biochar selling price considering crop yield increases of 0.6%, 2.9%, and 10% after biochar application over 20 years in Glenn County, Hamilton County, and Jackson County, respectively. The biochar prices are calculated under low and high commodity prices to determine upper and lower bounds. Jackson County has the most economically beneficial scenario with an average minimum fuel selling price (MFSP) of 1.55 gal –1 of biofuel produced whereas Hamilton County has the highest average MFSP of 3.82 gal –1 . The life–cycle analysis shows that woody biomass has a strong potential to produce carbon–negative energy compared to grass and straw. As a result, of the 304 cases scenarios considered for this platform, 64% could produce biofuel with negative GHG emissions, which would meet the Renewable Fuel Standard (RFS) target for cellulosic biofuels.

09 BIOMASS FUELS↗

Evaluating Support for OpenMP Offload Features

The OpenMP language features have been evolving to meet the rapid development in hardware platforms. DOE applications tend to push the bleeding edge of features ratified in the OpenMP specification and tend to expose the rough edges of the features' implementations. The software harness on DOE supercomputers such as Titan and (upcoming) Summit include Cray, Clang, Flang, XL and GCC compilers. It is critical, especially for Summit, that the compilers support OpenMP offloading features. This paper focuses on evaluating support for OpenMP 4.5 target offload directives across compiler implementations on Titan and Summitdev, an early access system, which is one generation removed from Summit's architecture enabling application teams to test the systems' architecture. Our tests not only evaluate the OpenMP implementations but also expose ambiguities in the OpenMP 4.5 specification. We also evaluate compiler implementations using kernels extracted from production DOE applications. This helps in assessing the interaction of different OpenMP directives independent of other application artifacts. We are aware that the implementations are constantly evolving and are advertised as having only partial OpenMP 4.x support. We see this as a synergistic effort to help identify and correct features that are required by DOE applications and prevent deployment delays later on. Going forward, we also plan to interact with standard benchmarking bodies like SPEC/HPG to donate our tests and mini-apps/kernels for potential inclusion in the next release versions of SPEC OMP and SPEC ACCEL benchmark suites.

Monsalve Diaz, Jose↗

Evaluating the effectiveness of program data features for guiding memory management

Recent trends have led to the adoption of larger and more complex memory systems, often with multiple tiers of memory performance within the same platform. To utilize complex memory systems efficiently, current data management strategies must be altered to map usage demands to the underlying hardware. Applications, as the generators of memory accesses, are well-suited to guide this process, but building and maintaining separate source code versions for different memory systems is not feasible in most cases. One potential solution is to employ automated program profiling and analysis to facilitate the production of application-based guidance. By attaching memory usage information to static or lightweight program features, compilers and runtime systems can generate fine-grained guidance without additional efforts from users or developers. Recent works have employed this approach with some success, but it is not clear which program features are most useful for guiding data management.This work evaluates the effectiveness of using different program data features to predict memory usage and guide memory management. It employs a custom set of simulation tools, based in the Intel® Pin framework, to collect and analyze the usage characteristics of application data associated with common program data features, such as allocation sites, types, and context. The results show that even relatively simple features, such as object size, are useful for selecting data with similar usage properties, but finer-grained features, such as the instructions that access a particular object, are often much more effective. Additionally, this work evaluates the performance of using different data features and different program inputs to guide data placement on a heterogeneous memory platform with a limited amount of high performance memory.

Effler, T. Chad↗

Combination Attenuation Offers Strategy for Live Attenuated Coronavirus Vaccines

With an ongoing threat posed by circulating zoonotic strains, new strategies are required to prepare for the next emergent coronavirus (CoV). Previously, groups had targeted conserved coronavirus proteins as a strategy to generate live attenuated vaccine strains against current and future CoVs. With this in mind, we explored whether manipulation of CoV NSP16, a conserved 2'O methyltransferase (MTase), could provide a broad attenuation platform against future emergent strains. Using the severe acute respiratory syndrome-CoV mouse model, an NSP16 mutant vaccine was evaluated for protection from heterologous challenge, efficacy in the aging host, and potential for reversion to pathogenesis. Despite some success, concerns for virulence in the aged and potential for reversion makes targeting NSP16 alone an untenable approach. However, combining a 2'O MTase mutation with a previously described CoV fidelity mutant produced a vaccine strain capable of protection from heterologous virus challenge, efficacy in aged mice, and no evidence for reversion. Together, the results indicate that targeting the CoV 2'O MTase in parallel with other conserved attenuating mutations may provide a platform strategy for rapidly generating live attenuated coronavirus vaccines. IMPORTANCE Emergent coronaviruses remain a significant threat to global public health and rapid response vaccine platforms are needed to stem future outbreaks. However, failure of many previous CoV vaccine formulations has clearly highlighted the need to test efficacy under different conditions and especially in vulnerable populations such as the aged and immunocompromised. This study illustrates that despite success in young models, the 2'O methyltransferase mutant carries too much risk for pathogenesis and reversion in vulnerable models to be used as a stand-alone vaccine strategy. Importantly, the 2'O methyltransferase mutation can be paired with other attenuating approaches to provide robust protection from heterologous challenge and in vulnerable populations. Coupled with increased safety and reduced pathogenesis, the study highlights the potential for 2'O methyltransferase attenuation as a major component of future live attenuated coronavirus vaccines.

Evolview, evolgenius, SARS-CoV, NSP14 exonuclease↗

Performance Assessment of a New Gamma Spectroscopy Toolkit: Peak Doctor and the Spectral Nondestructive Assay Platform (SNAP) - 17397

High resolution gamma spectroscopy (HRGS) is a widely used technique for non-destructive characterization of nuclear materials, and assay of radioactive waste. The ability to accurately evaluate raw spectral data is an important step in producing high-quality results. A spectral analysis application known as Peak Doctor has been developed under a Cooperative Research and Development Agreement (CRADA) between LANL and Pajarito Scientific Corporation (PSC). The software has undergone several years of testing and validation by the Radioactive Waste Characterization Team of the LANL Waste Management Services Group (WM-SVS). PeakDoctor is designed to work with the Spectral Nondestructive Assay Platform (SNAP{sup TM}) to provide a complete HRGS analysis engine. SNAP{sup TM} performs model specific corrections for attenuation and geometry. These applications are the major components of a new toolkit designed primarily for portable far-field non-destructive assay. Peak Doctor performs a very accurate peak fit analysis with the goal of improving upon the capabilities of existing commercially available routines. It is designed to be user-configurable and can be customized to any given type of detector and any given type of spectrum. Peak Doctor was developed to resolve many of the inherent complexities in gamma ray spectra including overlapping peaks, complex multiplet regions, large step peaks, backscatter regions and Compton edges. Unlike most spectral analysis platforms, Peak Doctor does not rely on the energy calibration and detector resolution parameters that are saved by the operator in the spectrum file. Instead, key parameters are pre-defined for individual detectors. The software fits a continuum using a series of splines between a series of junctions or 'knots'. Fitting techniques are used to join the splines together to create a near-continuous multi-element curve. Optimizing the location of the knots is one of Peak Doctor's most powerful features. The knots are initially configured using a pre-defined list and are removed or added automatically during the fitting process. Knots are also created when new features are identified such as Step Peaks and Compton Edges. The user can also manually specify knots in order to improve the continuum fit. The initial fit is improved on by removing any outlier regions (which are converted to peaks) and the continuum fitting process is repeated. At this stage, an experienced user can work interactively with the fit by manually converting peak regions to continuum or vice versa. The final step is to fit a series of peaks above the continuum based on detector parameters. Single and multiplet peaks are then processed by either the tailing (piecewise) or non-tailing (Gaussian) Levenberg Marquardt non-linear peak fitting routine depending on the user defined selection. Only a rough knowledge of the detector characteristics (energy calibration and resolution) is required for the fitting process to proceed with good accuracy. Any peaks that are missed can be manually added by the user and will also be fitted. Discontinuities in the peak / continuum fit can be rapidly identified by reviewing the 'residuals scale' plot. For waste streams that are well characterized, it is often the case that routinely encountered spectra will have similar peaks and continuum features. For these cases a handy 'One Step' method is available that proceeds in an automated fashion without user interaction. Peak Doctor has been configured with a set of default spectrum types including plutonium / transuranic waste (including Weapons Grade Pu, Heat Source Pu, Am-241, Am-243 and Np-237), depleted or enriched uranium, nuclear power plant / intermediate level waste (with fission and activation products such as Cs-137 and Co-60) as well as Naturally Occurring Radioactive Materials (NORM). The user can easily add new spectrum types for specific waste streams or other types of radiological / special nuclear materials. The output from PeakDoctor (including net peak area, centroid energy and a list of minimum detectable activity levels at pre-defined regions) is used by SNAP{sup TM} to complete the data analysis process. Isotope activities are calculated using configurable template-driven geometry and attenuation correction methods. The software accounts for matrix and container wall effects, collimator / angular corrections, detector efficiency (based on calibration curves) and stand-off distance. SNAP{sup TM} uses published algorithms incorporating a series of decision points during its operation to allow the analyst to provide logical input to guide the software during the analysis of each unique spectrum. The Peak Doctor / SNAP{sup TM} toolkit has been extensively tested and validated under a variety of conditions using 'benchmark' reference spectra. Test scenarios reported include HPGe-based measurements of well characterized uranium and plutonium standards and radioactive sources with a variety of different geometries and matrix materials including surrogate drums and boxes. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Preliminary Workforce Development and Environmental and Co-use Management Plans for a Floating Offshore Wind Platform - CRADA 609 (Final Report)

Pacific Northwest National Laboratory (PNNL) provided technical assistance to Glosten, Inc. and its affiliate, PelaStar, LLC to advance the development of their floating offshore wind (FOSW) platform. PNNL provided guidance and assessment in two areas that are important to address in the development of FOSW platforms: (1) workforce development and (2) environmental impacts and ocean co-use considerations. This work was funded by the U.S. Department of Energy’s (DOE) Wind Energy Technologies Office (WETO) through Phase 2 of the FLoating Offshore Wind ReadINess (FLOWIN) Prize. It should be noted that the Plans presented in this report are specific to the PelaStar tension-leg platform (TLP) and may not be applicable to all FOSW platforms. Workforce development and environmental/co-use impacts are highly dependent on the geographical region in which activities take place. At the request of PelaStar, PNNL focused on two regions where development may take place: the Gulf of Maine and Northern California. PNNL generated a preliminary Workforce Development Plan for PelaStar, which includes estimated job numbers and skillsets required to establish a workforce to manufacture, install, and operate their platform as part of FOSW projects. The Plan offers methods to increase diversity, equity, and inclusion practices when developing a new workforce and includes colleges and training centers for potential recruitment. Both positive and negative impacts to communities are evaluated, with potential mitigation strategies for reducing negative impacts. The structure of Community Benefit Agreements and Project Labor Agreements are discussed, noting the limitations of the role of a platform manufacturer versus the offshore wind developer. PNNL also drafted a preliminary Environmental and Co-Use Management Plan that serves as a guide to preparing an environmental assessment related to the installation and operation of PelaStar’s unique TLP design, including its potential ecological, socioeconomic, and emissions impacts. The Plan summarizes information on relevant regulatory requirements, potential impact producing factors, monitoring and mitigation measures, and physical and biological resources in the Gulf of Maine and Northern California. One of the primary perceived benefits of the PelaStar TLP is its reduced footprint due to its tensioned tendons versus catenary or taut moorings, but more research must be done as there are no studies on PelaStar’s TLP system to-date. The section also highlights ocean co-use considerations for PelaStar’s TLP system, specifically for fisheries, including existing perspectives, methods, examples, and limitations. The PNNL team established through this preliminary work and review of available literature and resources that there is not yet much research or planning around FOSW. With FOSW being a new industry, many of the findings and planning are adapted from fixed bottom offshore wind, which itself is only just taking off in the United States. More research is needed to establish best practices for workforce development and to assess environmental and ocean co-use impacts and mitigation approaches.

17 WIND ENERGY↗

Aerodynamic Characterization and Improved Testing Methods for the Space Launch System Liftoff and Transition Environment

Low-speed wind tunnel testing for the liftoff and transition environment of the Space Launch System (SLS) was recently completed in the NASA Langley Research Center 14- by 22-Foot Subsonic Tunnel using 1.75%-scale models of three SLS vehicle configurations. During the liftoff testing, the primary objective was to evaluate the aerodynamic forces and moments on the SLS launch vehicles, as the vehicle, launch tower, and mobile launch platform were subjected to ground winds from all directions at varying heights for the vehicle off the launch pad. Additionally, aerodynamic forces and moments were acquired for all three SLS vehicles during the transition phase from liftoff to ascent that covered a wide range of angles of attack and angles of side slip. Details of the experimental setup including improved testing methods and a stiffer sting-balance system based on lessons learned from previous test entries are presented. Also, a new force measurement technique was applied during the test where two subminiature six-component load cells were installed in each Solid Rocket Booster (SRB) to acquire forces and moments for each SRB separately from the full vehicle forces and moments measured by the main strain gauge balance. Finally, sample results from the experiment are presented including improved overall data coverage, evaluation of the new SRB data, and smoke flow visualization photos.

Chan, David T.↗

Rancor-HUNTER: A Virtual Plant and Operator Environment for Predicting Human Performance

Advances in simulation capabilities to model physical systems have outpaced the development of simulations for humans using those physical systems. There is an argument that the infinite span of potential human behaviors inherently render human modeling more challenging than physical systems. Despite this challenge, the need for modeling humans interacting with these complex systems is paramount. As technologies have improved, many of the failure modes originating from the physical systems have been solved. This means the overall proportion of human errors has increased, such that it is not uncommon to be the primary driver of system failure in modern complex systems. Moreover, technologies such as automated systems may introduce emerging contexts that can cause new, unanticipated modes of human error. Therefore, it is now more important than ever to develop models of human behavior to realize overall system error reductions and achieve established safety margins. To support new and novel concepts of operations for the anticipated wave of advanced nuclear reactor deployments, human factors and human reliability analysis researchers need to develop advanced simulation-based approaches. This talk presents a simulation environment suitable to both collect data and then perform Monte Carlo simulations to evaluate human performance and develop better models of human behavior. Specifically, the Rancor Microworld Simulator models a complex energy production system in a simplified manner. Rancor includes computer-based procedures, which serve as a framework to automatically classify human behaviors without manual, subjective experimenter coding during scenarios. This method supports a detailed level of analysis at the task level. It is feasible for collecting large sample sizes required to develop quantitative modelling elements that have historically challenged traditional full-scope simulator study approaches. Additionally, the other portion of this experimental platform, the Human Unimodel for Nuclear Technology to Enhance Reliability (HUNTER), is presented to show how the collected data can be used to evaluate novel scenarios based on the contextual factors, or performance shaping factors, derived from Rancor simulations. Rancor-HUNTER is being used to predict operator performance with new procedures, such as results from control room modernization or new-build situations. Rancor-HUNTER is also proving a useful surrogate platform to model human performance for other complex systems.

99 GENERAL AND MISCELLANEOUS↗

Bhutan Water Resources Tech Paper: Comparing Precipitation, Temperature, and Phenology Data Trends in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

Himalayan countries, including Bhutan, have become vulnerable to warming trends which result in increasing temperature and variable rainfall and snowfall. By combining phenological and meteorological data, Earth observation platforms and sensors were used to assess trends in precipitation, temperature, and vegetation phenology in Bhutan from 1996 through 2017. This project studied precipitation using Climate Hazards Center Infrared Precipitation with Station data, analyzed temperature using the Famine Early Warning System Network Land Data Assimilation System, incorporated elevation data from the Shuttle Radar Topography Mission, and assessed vegetation phenology using Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) to evaluate climate variability and its effects on Bhutan. In situ temperature and precipitation data were also collected from the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) project and Bhutan’s National Center for Hydrology and Meterology. Modeled and in situ data showed similar trends in precipitation and temperature for the Thimpu, Chhukha, and Gasa regions. Aqua and Terra MODIS phenology data were variable from year to year. However, the data suggested a late onset of spring green up. Partners at the Bhutan Foundation and locally in Bhutan can use this information to better understand and monitor climate variability and replicate these methods for future analysis.

Kinley Dorji↗

Bhutan Water Resources Project Summary - Comparing Precipitation, Temperature, and Phenology Data Trends in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

Himalayan countries, including Bhutan, have become vulnerable to warming trends which result in increasing temperature and variable rainfall and snowfall. By combining phenological and meteorological data, Earth observation platforms and sensors were used to assess trends in precipitation, temperature, and vegetation phenology in Bhutan from 1996 through 2017. This project studied precipitation using Climate Hazards Center Infrared Precipitation with Station data, analyzed temperature using the Famine Early Warning System Network Land Data Assimilation System, incorporated elevation data from the Shuttle Radar Topography Mission, and assessed vegetation phenology using Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) to evaluate climate variability and its effects on Bhutan. In situ temperature and precipitation data were also collected from the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) project and Bhutan’s National Center for Hydrology and Meterology. Modeled and in situ data showed similar trends in precipitation and temperature for the Thimpu, Chhukha, and Gasa regions. Aqua and Terra MODIS phenology data were variable from year to year. However, the data suggested a late onset of spring green up. Partners at the Bhutan Foundation and locally in Bhutan can use this information to better understand and monitor climate variability and replicate these methods for future analysis.

DEVELOP Project Summary↗

Self‐Standing Carbon Nanofibers@Carbon Felt Electrodes to Boost Electrolyzer Productivity: Application to the Electro‐Manufacturing of trans ‐3‐Hexenedioic Acid and Adipic Acid

The industrial implementation of electrosynthesis for chemical manufacturing remains constrained by the limited surface area of conventional electrodes. Herein, this challenge is addressed by designing a carbon nanofiber@carbon felt (CNF@CF) electrode platform that combines the high conductivity, flexibility, and ease of handling of commercial carbon felts (CF) with the large surface area and tunable surface chemistry of carbon nanofibers (CNFs). CNFs are deliberately grown onto the CF scaffold to form a sword-in-sheath structure, where entangled nanofibers wrap the felt macrofibers to provide excellent mechanical stability and electrical conductivity without binders. CNF@CF is evaluated both as an electrode and as a catalyst support for the electrochemical hydrogenation of cis,cis-muconic acid (ccMA), a biobased platform molecule key to the production of performance polyamides and renewable Nylon 6,6. As a noncatalytic electrode for the partial hydrogenation to trans-3-hexenedioic acid, CNF@CF achieves a threefold increase in both cumulative productivity and Faradaic efficiency (FE) compared to bare CF. A similar boost in catalytic activity and energy efficiency is observed using Pd/CNF@CF for the hydrogenation of ccMA to adipic acid. These results highlight the opportunities of the CNF@CF platform for electro-organic synthesis and sustainable chemical manufacturing.

electrochemical hydrogenation↗

Spatially Resolved Proteome Profiling of <200 Cells from Tomato Fruit Pericarp by Integrating Laser-Capture Microdissection with Nanodroplet Sample Preparation

Due to sensitivity limitations, global proteome measurements generally require large amounts of biological starting material, which masks heterogeneity within the samples and differential protein expression among constituent cell types. Methods for spatially-resolved proteomics are being developed to resolve protein expression for distinct single cell types among highly heterogeneous tissues, but have primarily been applied to mammalian systems. Here we evaluate the performance of cell-type-specific proteome analysis of tomato fruit pericarp tissues by a platform integrating laser capture microdissection (LCM) and a recently developed automated sample preparation system (nanoPOTS, Nanodroplet processing in One pot for Trace Samples). Tomato fruits were cryosectioned prior to LCM, and tissues were dissected and captured directly into nanoPOTS chips for processing. Following processing, samples were analyzed by nanoLC-MS/MS. Approximately 1900 unique peptides and 422 proteins were identified on average from ~0.04 mm2 tissues comprising ~ 8-15 parenchyma cells. Spatially-resolved proteome analyses were performed using cells of outer epidermis, collenchyma, and parenchyma. Using =200 cells, a total of 1,870 protein groups were identified and the various tissues were easily resolved. The results provide spatial and tissue-specific insights into key enzymes and pathways involved in carbohydrate transport and source-sink relationships in tomato fruit. Of note, at the time of fruit ripening studied here, we identified differentially abundant proteins throughout the pericarp related to chlorophyll biogenesis, photosynthesis, and especially transport.

Liang, Yiran↗

De Novo Design of Proteins That Bind Naphthalenediimides, Powerful Photooxidants with Tunable Photophysical Properties

De novo protein design provides a framework to test our understanding of protein function and build proteins with cofactors and functions not found in nature. Here, we report the design of proteins designed to bind powerful photooxidants and the evaluation of the use of these proteins to generate diffusible small-molecule reactive species. Because excited-state dynamics are influenced by the dynamics and hydration of a photooxidant’s environment, it was important to not only design a binding site but also to evaluate its dynamic properties. Thus, we used computational design in conjunction with molecular dynamics (MD) simulations to design a protein, designated NBP (NDI Binding Protein), that held a naphthalenediimide (NDI), a powerful photooxidant, in a programmable molecular environment. Solution NMR confirmed the structure of the complex. We evaluated two NDI cofactors in this de novo protein using ultrafast pump–probe spectroscopy to evaluate light-triggered intra- and intermolecular electron transfer function. Moreover, we demonstrated the utility of this platform to activate multiple molecular probes for protein labeling.

carbonyls↗

An Analysis Workflow-Aware Storage System for Multi-Core Active Flash Arrays

Here, the need for novel data analysis is urgent in the face of a data deluge from modern applications. Traditional approaches to data analysis incur significant data movement costs, moving data back and forth between the storage system and the processor. Emerging Active Flash devices enable processing on the flash, where the data already resides. An array of such Active Flash devices allows us to revisit how analysis workflows interact with storage systems. By seamlessly blending together the flash storage and data analysis, we create an analysis workflow-aware storage system, AnalyzeThis. Our guiding principle is that analysis-awareness be deeply ingrained in each and every layer of the storage, elevating data analyses as first-class citizens, and transforming AnalyzeThis into a potent analytics-aware appliance. To evaluate the AnalyzeThis system, we have adopted both emulation and simulation approaches. In particular, we have evaluated AnalyzeThis by implementing the AnalyzeThis storage system on top of the Active Flash Array's emulation platform. We have also implemented an event-driven AnalyzeThis simulator, called AnalyzeThisSim, which allows us to address the limitations of the emulation platform, e.g., performance impact of using multi-core SSDs. The results from our emulation and simulation platforms indicate that AnalyzeThis is a viable approach for expediting workflow execution and minimizing data movement.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

A HPC “Cyber Wind Facility” Incorporating Fully-Coupled CFD/CSD for Turbine-Platform-Wake Interactions with the Atmosphere and Ocean

The central aims of the DOE-supported “Cyber Wind Facility” project center on the recognition that wind turbines over land and ocean generate power from atmospheric winds that are inherently turbulent and strongly varying, both spatially over the rotor disk and in temporally as the rotating blades pass through atmospheric eddies embedded within the mean wind. The daytime unstable atmospheric boundary layer (ABL) is particularly variable in space time as solar heating generates buoyancy-driven motions that interact with strong mean shear in the ABL “surface layer,” the lowest 200 - 300 m where wind turbines reside in farms. With the “Cyber Wind Facility” (CWF) program we initiate a research and technology direction in which “cyber data” are generated from “computational experiments” within a “facility” akin to a wind tunnel, but with true space-time atmospheric turbulence that drive utility-scale wind turbines at full-scale Reynolds numbers. With DOE support we generated the key “modules” within a computational framework to create a first generation Cyber Wind Facility (CWF) for single wind turbines in the daytime ABL---both over land where the ABL globally unstable and over water with closer-to-neutral atmospheric conditions but with time response strongly affected by wave-induced forcing of the wind turbine platform (here a buoy configuration). The CWF program has significantly improved the accuracy of actuator line models, evaluated with the Cyber Wind Facility in full blade-boundary-layer-resolved mode. The application of the CWF made in this program showed the existence of important ramp-like response events that likely contribute to bearing fatigue failure on the main shaft and that the advanced ALM method developed here captures the primary nonsteady response characteristics. Long-time analysis uncovered distinctive key dynamics that explain primary mechanisms that underlie potentially deleterious load transients. We also showed that blade bend-twist coupling plays a central role in the elastic responses of the blades to atmospheric turbulence, impacting turbine power.

17 WIND ENERGY↗