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At least 793 records · Page 44

Thermally-assisted-occupation density functional theory with generalized-gradient approximations

We extend the recently proposed thermally-assisted-occupation density functional theory (TAO-DFT) [J.-D. Chai, J. Chem. Phys. 136, 154104 (2012)] to generalized-gradient approximation (GGA) exchange-correlation density functionals. Relative to our previous TAO-LDA (i.e., the local density approximation to TAO-DFT), the resulting TAO-GGAs are significantly superior for a wide range of applications, such as thermochemistry, kinetics, and reaction energies. For noncovalent interactions, TAO-GGAs with empirical dispersion corrections are shown to yield excellent performance. Due to their computational efficiency for systems with strong static correlation effects, TAO-LDA and TAO-GGAs are applied to study the electronic properties (e.g., the singlet-triplet energy gaps, vertical ionization potentials, vertical electron affinities, fundamental gaps, and symmetrized von Neumann entropy) of acenes with different number of linearly fused benzene rings (up to 100), which is very challenging for conventional electronic structure methods. The ground states of acenes are shown to be singlets for all the chain lengths studied here. With the increase of acene length, the singlet-triplet energy gaps, vertical ionization potentials, and fundamental gaps decrease monotonically, while the vertical electron affinities and symmetrized von Neumann entropy (i.e., a measure of polyradical character) increase monotonically.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Is stochastic thermodynamics the key to understanding the energy costs of computation?

The relationship between the thermodynamic and computational properties of physical systems has been a major theoretical interest since at least the 19th century. It has also become of increasing practical importance over the last half-century as the energetic cost of digital devices has exploded. Importantly, real-world computers obey multiple physical constraints on how they work, which affects their thermodynamic properties. Moreover, many of these constraints apply to both naturally occurring computers, like brains or Eukaryotic cells, and digital systems. Most obviously, all such systems must finish their computation quickly, using as few degrees of freedom as possible. This means that they operate far from thermal equilibrium. Furthermore, many computers, both digital and biological, are modular, hierarchical systems with strong constraints on the connectivity among their subsystems. Yet another example is that to simplify their design, digital computers are required to be periodic processes governed by a global clock. None of these constraints were considered in 20th-century analyses of the thermodynamics of computation. The new field of stochastic thermodynamics provides formal tools for analyzing systems subject to all of these constraints. We argue here that these tools may help us understand at a far deeper level just how the fundamental thermodynamic properties of physical systems are related to the computation they perform.

computation↗

Vapor-cavity-QED system for quantum computation and communication

In this work, we propose performing key operations in quantum computation and communication using room-temperature atoms moving across a grid of high-quality-factor, small-mode-volume cavities. These cavities enable high-cooperativity interactions with single atoms to be achieved with a characteristic timescale much shorter than the atomic transit time, allowing multiple coherent operations to take place. We study scenarios where we can drive a Raman transition to generate photons with specific temporal shapes and to absorb, and hence detect, single photons. The strong atom-cavity interaction can also be used to implement the atom-photon controlled-phase gate, which can then be used to construct photon-photon gates, create photonic cluster states, and perform nondemolition detection of single photons. We provide numerics validating our methods and discuss the implications of our results for several applications.

Austin, Sharoon [National Institute of Standards a↗

Autotuning in High-Performance Computing Applications

Autotuning refers to the automatic generation of a search space of possible implementations of a computation that are evaluated through models and/or empirical measurement to identify the most desirable implementation. Autotuning has the potential to dramatically improve the performance portability of petascale and exascale applications. To date, autotuning has been used primarily in high-performance applications through tunable libraries or previously tuned application code that is integrated directly into the application. This paper draws on the authors' extensive experience applying autotuning to high-performance applications, describing both successes and future challenges. If autotuning is to be widely used in the HPC community, researchers must address the software engineering challenges, manage configuration overheads, and continue to demonstrate significant performance gains and portability across architectures. In particular, tools that configure the application must be integrated into the application build process so that tuning can be reapplied as the application and target architectures evolve.

97 MATHEMATICS AND COMPUTING↗

Error Detection and Correction LDMS Plugin Version 1.0

Sandia's Lightweight Distributed Metric Service (LDMS) is a data collection and transport system used at Livermore Computing to gather performance data across the center. While Sandia has a set of plugins available, they do not include all the data we need to capture. The ECAC plugin that we have developed enables collection of the Error Detection and Correction (EDAC) counters.

Shoga, Kathleen↗

Reimagining Codesign for Advanced Scientific Computing: Report for the ASCR Workshop on Reimagining Codesign

In March 2021, the U.S. Department of Energy’s Advanced Scientific Computing Research program convened the Workshop on Reimagining Codesign. The workshop, also known as ReCoDe, was organized around discussions on eight topic areas: (1) codesign for traditional high-performance computing workloads; (2) codesign of memory/storage systems; (3) codesign of machine learning, neuromorphic, quantum, and other non-von Neumann accelerators; (4) codesign for edge computing and processing at experimental instruments; (5) codesign for security and privacy; (6) hardware design tools and open-source hardware for high-productivity codesign; (7) tools, software stack, and programming languages for high-productivity codesign; and (8) quantitative tools and data collection for modeling and simulation for codesign. The panels identified four Priority Research Directions from these deliberations: (1) breakthrough computing capabilities with targeted heterogeneity and rapid design; (2) software and applications that embrace radical architecture diversity; (3) engineered security and integrity, from transistors to applications; and (4) design with data-rich processes.

97 MATHEMATICS AND COMPUTING↗

Distributed Resilience in High-Energy Physics Data Acquisition

Historical experience in the High-Performance Computing community teaches us that as computing systems grow, the instance of failures goes from rare to a regular occurrence. A survey of the growth in the size and complexity of Data AcQuisition (DAQ) networks in High-Energy Physics (HEP) experiments reveals that these networks are scaling exponentially, trending to a point where automated fault handling should be considered over the current manual practice, especially given the rarity of data such as in DUNE's mission to observe core-collapse supernovae. We propose a general system, DiDAQt, which is designed to provide fault detection and handling in HEP DAQs specifically, through MPI-like primitives that allow it to be added easily to existing systems. We evaluate the scalability and response time of a prototype on the FABRIC national testbed, with results indicating sufficient scalability for current and near-future DAQs as well as practical response times (under 1 microsecond decision time).

Wolosewicz, A. [IIT, Chicago]↗

Programmable stream prefetch with resource optimization

A stream prefetch engine performs data retrieval in a parallel computing system. The engine receives a load request from at least one processor. The engine evaluates whether a first memory address requested in the load request is present and valid in a table. The engine checks whether there exists valid data corresponding to the first memory address in an array if the first memory address is present and valid in the table. The engine increments a prefetching depth of a first stream that the first memory address belongs to and fetching a cache line associated with the first memory address from the at least one cache memory device if there is not yet valid data corresponding to the first memory address in the array. The engine determines whether prefetching of additional data is needed for the first stream within its prefetching depth. The engine prefetches the additional data if the prefetching is needed.

97 MATHEMATICS AND COMPUTING↗

Error Detection and Correction LDMS Plugin Version 1.0

Sandia's Lightweight Distributed Metric Service (LDMS) is a data collection and transport system used at Livermore Computing to gather performance data across the center. While Sandia has a set of plugins available, they do not include all the data we need to capture. The ECAC plugin that we have developed enables collection of the Error Detection and Correction (EDAC) counters.

Shoga, Kathleen↗

Enhancing obfuscation of digital content through use of linear error correction codes

Technologies related to enhancing security of digital content are described. Linear error correction codes (LECCs) are employed for dual purposes: 1) to obfuscate digital content; and 2) to verify integrity of the digital content. A transmitter computing system obfuscates digital content based upon an obfuscation protocol, wherein the obfuscated digital content includes an LECC. A receiver computing system deobfuscates the digital content by performing the inverse of the obfuscation protocol.

Corral, Celestino A.↗

Early Research in Load-Following Management for HPC-Nuclear Integration

With the rising demand for high performance computing (HPC) and artificial intelligence (AI) systems, maintaining a stable and efficient power supply is increasingly critical. The HPC team at Idaho National Laboratory is spearheading efforts to seamlessly integrate HPC systems with nuclear reactors. This lightning talk explores one early strategy for managing power fluctuations using software-defined controls. To effectively harness nuclear reactors for power generation, control mechanisms are essential to address the slow load-following capabilities of reactors, which are typically around 5% per minute. While this rate is sufficient for many uses, large HPC systems can experience rapid power consumption changes by tens of megawatts when jobs start or stop running. A reactor could overproduce power and match the peak power rating for the HPC system, however when the system is not running a job or a job unexpectedly stops, the load-following of the system would be affected leading to power being wasted and the likelihood of power transient occurrences increases. Controlling the increase or decrease of power consumption on these systems at the same rate as the load-following of reactors is one piece of the puzzle to properly utilizing nuclear reactors as a power source for HPC systems.

97 - MATHEMATICS AND COMPUTING↗

Modeling I/O Performance Variability Using Conditional Variational Auto Encoders

Storage system performance modeling is crucial for efficient use of heterogeneous shared resources on leadership class computers. Variability in application performance, particularly variability arising from concurrent applications sharing I/O resources, is a major hurdle in the development of accurate performance models. We adopt a deep learning approach based on conditional variational auto encoders (CVAE) for I/O performance modeling, and use it to quantify performance variability. We illustrate our approach using the data collected on Edison, a production supercomputing system at the National Energy Research Scientific Computing Center (NERSC). The CVAE approach is investigated by comparing it to a previously proposed sensitivity-based Gaussian process (GP) model. We find that the CVAE model performs slightly better than the GP model in cases where training and testing data come from different applications, since CVAE can inherently leverage the whole data from multiple applications whereas GP partitions the data and builds separate models for each partition. Hence, the CVAE offers an alternative modeling approach that does not need preprocessing; it has enough flexibility to handle data from a wide variety of applications without changing the inference approach.

I/O perfornance variability↗

Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators

Computers with hardware accelerators, also referred to as hybrid-core systems, speedup applications by offloading certain compute operations that can run faster on accelerators. Thus, it is not surprising that many of top500 supercomputers use accelerators. However, in addition to procurement cost, significant programming and porting effort is required to realize the potential benefit of such accelerators. Hence, before building such a system it is prudent to answer the question 'what is the projected performance benefit from accelerators for the workloads of interest?'. We address this question by way of a performance-modeling framework that predicts realizable application performance on accelerators rapidly and accurately without going to the considerable effort of porting and tuning. The modeling framework first automatically identifies commonly found compute patterns in scientific applications which we term idioms, which may benefit by accelerator technology. Next the framework models the predicted speedup of those idioms if they were to be ported to and run on hardware accelerators. As a proof of concept we characterize two kinds of accelerators 1) the FPGA accelerators on a Convey HC-1 system and 2) an NVIDIA FERMI GPU accelerator. We model performance of the idioms gather/scatter and stream and our predictions show that where these occur in two full-scale HPC applications, Milc and HYCOM, gather/scatter speeds up by as much as 15X, and stream by as much as 14X, whereas the overall compute time of Milc improves by 3.4% and HYCOM by 20%.

Computer Science↗

Petascale Data Storage Institute (PDSI) Final Report

Petascale computing infrastructures for scientific discovery make petascale demands on information storage capacity, performance, concurrency, reliability, availability, and manageability. The Petascale Data Storage Institute focuses on the data storage problems found in petascale scientific computing environments, with special attention to community issues such as interoperability, community buy-in, and shared tools. The Petascale Data Storage Institute is a collaboration between researchers at Carnegie Mellon University, National Energy Research Scientific Computing Center, Pacific Northwest National Laboratory, Oak Ridge National Laboratory, Sandia National Laboratory, Los Alamos National Laboratory, University of Michigan, and the University of California at Santa Cruz. Because the Institute focuses on low level files systems and storage systems, its role in improving SciDAC systems was one of supporting application middleware such as data management and system-level performance tuning.

97 MATHEMATICS AND COMPUTING↗

Aces4: A Platform for Computational Chemistry Calculations with Extremely Large Block-Sparse Arrays

Aces4 is a parallel programming platform comprising a DSL for Computational Chemistry and its runtime system. It offers a convenient way to express parallelism together with extensive support for extremely large, possibly sparse, distributed arrays. It aids scientists in the creation of performant, scalable, massively parallel programs that can effectively take advantage of leadership class computing systems to address important scientific questions. Aces4 has enabled the development and implementation of new methods in electronic structure theory which are breaking new ground in their ability to perform highly accurate calculations on ever larger molecular systems. In this paper the design of Aces4, which is based on the the Super Instruction Architecture approach, is described. Experimental scaling results for Molecular Cluster Perturbation Theory, a new method enabled by Aces4, and CCSD, a widely used computational chemistry method are given.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A Conceptual Architecture for a Quantum-HPC Middleware

Abstract-Quantum computing promises potential for science and industry by solving certain computationally complex problems faster than classical computers. Quantum computing systems evolved from coupled to classical computing nodes (HPC). With the increasing monolithic systems towards modular architectures comprising multiple quantum processing units (QPUs) scale, middleware systems that facilitate the efficient coupling of quantum-classical computing are becoming critical. Through an in-depth analysis of quantum applications, integration patterns and systems, we identified a gap in understanding Quantum HPC middleware systems. We present a conceptual middleware to facilitate reasoning about quantum-classical integration and serve as the basis for a future middleware system. An essential contribution of this paper lies in leveraging well-established high performance computing abstractions for managing workloads, tasks, and resources to integrate quantum computing into HPC systems seamlessly

97 MATHEMATICS AND COMPUTING↗