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At least 793 records · Page 44

Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements

Asgard archaea are of great interest as the progenitors of Eukaryotes, but little is known about the mobile genetic elements (MGEs) that may shape their ongoing evolution. Here, we describe MGEs that replicate in Atabeyarchaeia, a wetland Asgard archaea lineage represented by two complete genomes. We used soil depth–resolved population metagenomic data sets to track 18 MGEs for which genome structures were defined and precise chromosome integration sites could be identified for confident host linkage. Additionally, we identified a complete 20.67 kbp circular plasmid and two family-level groups of viruses linked to Atabeyarchaeia, via CRISPR spacer targeting. Closely related 40 kbp viruses possess a hypervariable genomic region encoding combinations of specific genes for small cysteine-rich proteins structurally similar to restriction-homing endonucleases. One 10.9 kbp integrative conjugative element (ICE) integrates genomically into theAtabeyarchaeum deiterrae-1chromosome and has a 2.5 kbp circularizable element integrated within it. The 10.9 kbp ICE encodes an expressed Type IIG restriction-modification system with a sequence specificity matching an active methylation motif identified by Pacific Biosciences (PacBio) high-accuracy long-read (HiFi) metagenomic sequencing. Restriction-modification of Atabeyarchaeia differs from that of another coexisting Asgard archaea, Freyarchaeia, which has few identified MGEs but possesses diverse defense mechanisms, including DISARM and Hachiman, not found in Atabeyarchaeia. Overall, defense systems and methylation mechanisms of Asgard archaea likely modulate their interactions with MGEs, and integration/excision and copy number variation of MGEs in turn enable host genetic versatility.

Biochemistry & Molecular Biology↗

Protein-Nanoparticle Interactions Govern the Interfacial Behavior of Polymeric Nanogels: Study of Protein Corona Formation at the Air/Water Interface

Biomedical applications of nanoparticles require a fundamental understanding of their interactions and behavior with biological interfaces. Protein corona formation can alter the morphology and properties of nanomaterials, and knowledge of the interfacial behavior of the complexes, using in situ analytical techniques, will impact the development of nanocarriers to maximize uptake and permeability at cellular interfaces. In this study we evaluate the interactions of acrylamide-based nanogels, with neutral, positive, and negative charges, with serum-abundant proteins albumin, fibrinogen, and immunoglobulin G. The formation of a protein corona complex between positively charged nanoparticles and albumin is characterized by dynamic light scattering, circular dichroism, and surface tensiometry; we use neutron reflectometry to resolve the complex structure at the air/water interface and demonstrate the effect of increased protein concentration on the interface. Surface tensiometry data suggest that the structure of the proteins can impact the interfacial properties of the complex formed. These results contribute to the understanding of the factors that influence the bio-nano interface, which will help to design nanomaterials with improved properties for applications in drug delivery.

Traldi, Federico (ORCID:0000000161251012)↗

Lunar thermal measurements in conjunction with Project Apollo

Problems related to the feasibility of measuring lunar heat flow at the lunar surface are analyzed, and the findings which required that a drill be developed for lunar use are discussed. Numerical simulations were made of the in situ measurement of lunar thermal conductivity using a circular ring source of heat. The results of these simulations formed the basis for the criteria used in designing a subsurface thermal probe for ALSEP. Preliminary analyses are presented on the data obtained from the Apollo 15 and 17 missions.

Clark, S. P., Jr.↗

Multiplexor and sensor system tradeoff study

The influence of certain sensor parameters on the accuracy of information extracted from satellite image data is studied, using a digital processing flow to simulate the effects of the sensor parameters. The method employed was to select representative images; scan and digitize them; process the digital data to simulate the effects of presampling filters, instantaneous field of view (IFOV) size and shape, sampling rates, noise, and word length; record the processed data on film; evaluate the film images; and draw conclusions from the evaluations. The study showed that presampling filters are not required to suppress aliasing, that the choice of square and circular IFOV shapes is not important, and that increased horizontal and vertical sampling rates produce an increase in apparent resolution. Work with low-contrast targets revealed a definite maximum in the tradeoff between IFOV size and SNR.

Ferneyhough, D. G., Jr.↗

Near field pressure fluctuations of a circular jet

The relationship between the evolution of vortices in a circular jet and the generation of fluctuating pressure was studied, using an apparatus consisting of a jet nozzle connected to a stagnation chamber with a fifth-order polynomial contraction. The data were digitized and computer-processed. The constant pressure contours near the jet shoow that the evolution of coherent structures is the source of pressure perturbations. The data obtained in the vicinity of the jet indicate that two length scales govern the decay of the fluctuating pressure. A thin hydrodynamic near-field extends about 1 instability wavelength from the jet edge, and pressure decays exponentially. A thick acoustic near-field takes about ten acoustic wavelengths to reach the far field. The pressure disturbances decay algebraically in this region.

Lafouasse, B.↗

Investigation of generic hub fairing and pylon shapes to reduce hub drag

Reported are investigations of fairing configurations pointed toward substantially reducing hub drag. Experimental investigations have shown the importance of hub-fairing camber, lower-surface curvature, and relative size of the drag. The significance of pylon and hub fairings in combination have also been shown. Model test data presented here documented these findings, and also showed the effect of gaps and hub-fairing inclination angle on drag. From a drag standpoint, the best hub fairing had a circular arc, upper-surface curvature, a flat bottom surface, and 8.75% camber.

Stroub, Robert H.↗

Coherent shedding from a circular cylinder at critical, supercritical, and transcritical Reynolds numbers

Results are summarized from NASA-Langley studies of the mean drag and unsteady flow parameters of the flow around a circular cylinder at critical, supercritical and transcritical Re. Flow velocities of Mach 0.05-0.40 in the Low Turbulence Pressure Tunnel were used in conjunction with Re from 250,000-6.2 million. Data were collected in the wake and along the walls using pressure transducers. Corrections which were devised to calculate the Strouhal numbers in the presence of broadband signatures in the supercritical regime are described. The tests revealed, as found in previous tests, a discontinuity in the Strouhal number (from 0.2-0.43) in the supercritical regime.

Horvath, Thomas J.↗

1E 1048.5 + 5421 - A new 114 minute AM Herculis binary

The discovery of a new AM Herculis binary system, found as a serendipitous Einstein X-ray source, is described. Like the previously discovered mass-transfer binaries involving synchronously rotating magnetic white-dwarf primaries, the system exhibits strong circular polarization, X-ray and optical continuum variations, and optical emission lines, all of which seem to be modulated with these binary periods of 114.5 + or - 0.2 minutes. Although all data are not concurrent, the new system appears to possess the highest ratio of F(x)/F(opt) yet found for an AM Her system. The surprising accumulation of AM Her variables with periods near 114 minute is commented on.

Morris, Simon L.↗

The UCR gamma ray telescope data acquisition system

A description is given of an electronics system based on the DEC Falcon SBC-11/23+, which has been designed and built to support a balloon-borne double Compton gamma-ray telescope. The system provides support for commands, data acquisition, data routing and compression, and photomultiplier tube gain control. The software consists of a number of interrupt-driven routines of differing priorities to handle each system task. This includes two circular buffers for onboard processing and bit encoding before transmission of the information to the ground computer. Acquisition of gamma-ray events at rates above the 200-Hz telemetry constraint is easily achieved.

O'Neill, T. J.↗

Investigation of generic hub fairing and pylon shapes to reduce hub drag

This paper reports investigations of fairing configurations pointed toward substantially reducing hub drag. Experimental investigations have shown the importance of hub-fairing camber,lower-surface curvature, and relative size on the drag. The significance of pylon and hub fairings in combination have also been shown. Model test data presented here documented these findings, and also showed the effect of gaps and hub-fairing inclination angle on drag. From a drag standpoint, the best hub fairing had a circular arc, upper-surface curvature, a flat bottom surface, and 8.75 percent camber.

Stroub, Robert H.↗

Early results from the TOPEX/POSEIDON GPS precise orbit determination demonstration

TOPEX/POSEIDON, a US/French oceanographic mission launched in August 1992, is the first earth satellite to carry a multi-channel, dual frequency Global Positioning System (GPS) receiver capable of making high precision P-code pseudorange and carrier phase measurements. The receiver was placed on TOPEX/POSEIDON as an experiment to demonstrate the potential of differential GPS tracking for subdecimeter orbit determination. In addition to the receiver, TOPEX/POSEIDON carries two flight-proven tracking systems to provide the operational precise orbit determination needed to meet the mission scientific requirements. These include a French-built one-way Doppler system known as DORIS (Doppler Orbitography and Radiopositioning Integrated by Satellite) and a circular ring of laser retroreflectors. Here we evaluate the quality of the GPS-determined orbits by examining post-fit residuals, orbit comparisons with DORIS, and orbit repeatability on overlapping data arcs. Overlapping data arcs with 6 hrs of common data out of a 30-hr arc have an average root-mean-square (RMS) altitude difference of 3.0 cm for 9 arcs. The average RMS altitude difference about the mean with a DORIS orbit was 5.7 cm.

Bertiger, Willy↗

Effects of Melt Processing on Evolution of Structure in PEEK

We report on the effects of melt processing temperature on structure formation in Poly(ether-ether-ketone), PEEK. Real time Small Angle X-ray Scattering, SAXS, and thermal analysis are used to follow the melting behavior after various stages of processing. Assignment of peaks to structural entities within the material, the relative perfection of the crystals, and the possibility of their reorganization, are all influenced by the melt processing history. With the advent of high intensity synchrotron sources of X-radiation, polymer scientists gain a research tool which, when used along with thermal analysis, provides additional structural information about the crystals during growth and subsequent melting. PEEK is an engineering thermoplastic polymer with a very high glass transition temperature (145 C) and crystal melting point (337 C). PEEK has been the subject of recent studies by X-ray scattering in which melt and cold crystallization were followed in real-time. X-ray scattering and thermal studies have been used to address the formation of dual endothermic response which has been variously ascribed to lamellar insertion, dual crystal populations, or melting followed by re-crystallization. Another important issue is whether all of the amorphous phase is located in interlamellar regions, or alternatively whether some is located in "pockets" away from the crystalline lamellar stacks. The interpretation of scattering from lamellar stacks varies depending upon whether such amorphous pockets are formed. Some groups believe all of the amorphous phase is interlamellar. This leads to selection of a smaller thickness for the crystals. Other groups suggest that most amorphous phase is not interlamellar, and this leads to the suggestion that the crystal thickness is larger than the amorphous layer within the stacks. To investigate these ideas, we used SAXS and Differential Scanning Calorimetry to compare results of single and dual stage melt crystallization of PEEK using a treatment scheme involving annealing/crystallization at T(sub a1) followed by annealing at T(sub a2) where either T(sub a1) < T(sub a2) or T(sub a1) > T(sub a2). We proposed a model to explain multiple melting endotherms in PPS, treated according to one or two-stage melt or cold crystallization. Key features of this model are that multiple endotherms: (1) are due to reorganization/recrystallization after cold crystallization; and, (2) are dominated by crystal morphology after melt crystallization at high T. In other words, multiple distinct crystal populations are formed by the latter treatment, leading to observation of multiple melting. PEEK 45OG pellets (ICI Americas) were the starting material for this study. Films were compression molded at 400 C, then quenched to ice water. Samples were heated to 375 C in a Mettler FP80 hot stage and held for three min. to erase crystal seeds before cooling them to T(sub a1) = 280 C . Samples were held at T(sub a2) for a period of time, then immediately heated to 360 C. In the second treatment samples were held at T(sub a1) = 31 C for different crystallization times t(sub c) then cooled to 295 C and held 15 min. In situ (SAXS) experiments were performed at the Brookhaven National Synchrotron Light Source with the sample located inside the Mettler hot stage. The system was equipped with a two-dimensional position sensitive detector. The sample to detector distance was 172.7 cm and the X-ray wavelength was 1.54 Angstroms. SAXS data were taken continuously during the isothermal periods and during the heating to 360 C at 5 C/min. Each SAXS scan was collected for 30 sec. Since the samples were isotropic, circular integration was used to increase the signal to noise ratio. After dual stage melt crystallization with T(sub a1) < T(sub a2) the lower melting endotherm arises from holding at T(sub a1). During cooling a broad distribution of crystals forms, and the low-melting tail is perfected during T(sub al). Heating to T(sub a2) melts these imperfect crystals and allows others with greater average long spacing to form in their place. After dual stage crystallization with T(sub a1) > T(sub a2), the amount of space remaining for additional growth at T(sub a2) depends upon the holding time at T(sub a1). The long period of crystals formed at T(sub a2) is smaller than that formed at T(sub a1) due to growth in a now-restricted geometry. Perfection of crystals is seen as an increase of the intensity of the population scattering at higher s, while the intensity of the population scattering at lower s stays constant. During heating from below to above the minor endotherm, we see rapid decrease of the intensity of the X-ray scattering corresponding to the population of crystals scattering in the shoulder. Another important observation is that after the sample is annealed at 295 C, the shoulder intensity is restored once again. The population scattering at higher s remains longer before it disappears in the sample treated to the second stage of melt crystallization, compared to the sample crystallized with a single stage. This could be interpreted as an effect of continued perfection of the less perfect population, which is also reflected in the increased melting temperature of the smaller endotherm as the holding time at 295 C increases. In the corresponding DSC scans we see a shift in the area and the peak temperature of the lower melting endotherm with an increase of the annealing time.

Georgiev, Georgi↗

Planet Matching and Orbit Determination in multi-planet systems for Exoplanet Direct Imaging

A key aspect of the search for Earth-like exoplanets with direct imaging is determining if the exoplanet is in the habitable zone. Future direct imaging mission concepts such as HabEx and LUVOIR require an efficient cadence of observations. Previous work shows that a minimum of three epochs, spanning more than half a period, can determine orbital parameters to 10\% for a single, circular orbit. Multi-planet systems may require a different number and cadence of observations. We begin to address the multi-planet minimum observation approach by considering only the astrometric data of exoplanet candidate objects in high contrast images. Existing multi-planet trajectory matching libraries such as “Orbits For The Impatient” (OFTI) currently require users to specify which point sources belong to which planet and assumes that the user has already matched true-positive detections to planets. Additionally, planet matching needs to be considered when assessing the impact of observation scheduling on trajectory estimation accuracy. To address this need for fitting orbits to multiple objects with limited knowledge, we present an approach using a Monte Carlo study of different observation schedules and planetary systems in which we have developed an algorithm to automatically match observations to planets, and then check the accuracy of the matches. With a large number of cases, we can constrain the number of observations and the spacing necessary to “deconfuse” the detections. We present preliminary planet matching success rates for different observing schedules and planetary system parameters. We use these results to assess the scope of the confusion problem and discuss potential mitigation strategies.

Cahoy, Kerri↗

Mass Estimation Relationships for Conceptual Design of Blended-Wing-Body Cabin with Advanced Structures

Blended-Wing-Body (BWB) achieve a higher L/D than conventional tube and wing aircraft due to aerodynamic shaping of the non-circular pressure vessel that is made feasible through advanced composite technologies such as Pultruded Rod Stitched Efficient Unitized Structure (PRSEUS). Due to the relatively new nature of the BWB, sufficient historical data does not exist for conceptual aircraft designers to base their structural weight estimations on, especially for estimating weights of the pressurized cabin center body. This paper describes general parametric Mass Estimation Relationships (MERs) based on high fidelity finite element analysis using PRSEUS for estimating the weight of a BWB pressurized cabin structure that includes cabin area, center body sweep, fineness ratio, and take-off gross weight.

BWB↗

The ETROC2 as the Final Version for CMS Endcap Timing Layer (ETL) Upgrade

The ETROC (Endcap Timing Readout Chip) is being developed for the LGAD-based CMS Endcap Timing Layer (ETL) at HL-LHC. The ETL on each side of the interaction region will be instrumented with a two-disk system of MIP-sensitive LGAD (Low Gain Avalanche Diodes) silicon devices, read out by ETROCs for precision timing measurement with down to ~30 ps timing resolution per track. The ETROC is designed to handle a 16 x 16 pixel cell matrix, with each pixel being 1.3 mm x 1.3 mm to match the LGAD sensor pixel size. The front-end design for preamplifier and discriminator has been specifically optimized for the reduced LGAD signals, with enough flexibilities to meet the ETL specific needs for time resolution, power budget and radiation profile. The ETROC chip is implemented in a commercial 65nm CMOS process. Each channel consists of a preamplifier, a discriminator, a TDC used for TOA (Time Of Arrival) and TOT (Time Over Threshold) measurements, and a memory for data storage and readout. An in-pixel auto threshold calibration is included, along with a self-testing pattern generator. The TOT is used for time-walk correction of the TOA measurement. The detailed hit information (TOA and TOT) from each cell will be read out from a local circular buffer after each Level-1 Accept (about 1 MHz). In addition, a charge injection circuit is implemented to allow for testing and calibration. For more detailed monitoring of the signal pulses, waveform sampling circuits are included for one pixel. The clock distribution is based on a 16x16 H-tree design with a shielding structure to alleviate potential interference. The global peripheral circuits include a PLL, a phase shifter, an I2C slave controller, a fast control block, a global readout, and a data driver along with an efuse and temperature sensor. The ETROC builds event data frames for each L1A selected event and is also capable of providing L1 trigger information for user-defined delayed hits. The main design challenge is how to extract precision timing information from the small LGAD signals in the presence of high irradiation fluence, while keeping the power consumption and digital activity low. The ETL design goal for the time resolution of 50 ps per hit is required to achieve a 35 ps arrival time measurement for a MIP particle, which has its track registered in two ETL disk layers. The LGAD contribution is known to be about 30 ps, this means that the jitter from the ETROC has to be kept below 40 ps. The ETROC2 is the first full size full functionality prototype design fully compatible with the final chip specifications for CMS ETL and now becomes the final version. The ETROC2 chips have been extensively tested. We will present here new testing results including the bump bonding yield improvement study, the time walk correction (TWC) generality study with one pixel TWC applying to all pixels, the final SEU testing using both heavy ion and proton beam, more beam test studies including different sensors, and readiness for the ETROC2 production for CMS ETL upgrade.

Liu, Tiehui [Fermilab] (ORCID:0009000765225605)↗

A Fresh Look at the Stratigraphy of Northern Australe

The roughly circular collection of mare deposits centered at ~38.9°S, 93°E is often re- ferred to as Mare Australe. It is located outside of the Procellarum KREEP Terrain. The circular arrangement of Australe’s mare patches has suggested an ancient, heavily degraded or relaxed impact basin roughly 900 km in diameter. The mare deposits are generally thought to have erupted into smaller post- basin craters. The type, volume, and distribution of mare eruptions potentially resembles the early stages of basin-filling mare events, but which are preserved in Australe and some farside locations. Gravity data suggest that if there was a basin, it is much smaller than originally proposed (now ~600 km) and located in the northern part of Mare Australe, between Humboldt, Milne, and Jenner craters. As a whole, Mare Australe lacks the topography typically associated with a basin; however, northern Australe has a slight topographic depression that roughly corresponds to the basin-like Bouguer gravity signature in the same area. The compositions exposed in Humboldt crater suggest that a preexisting basin might have excavated deeper crustal material. However, the underlying cause of the circularity of Mare Australe’s deposits, particularly those extending outside of the potential impact basin setting, is not yet understood. Thus, Australe may preserve fundamental information about mare volcanism potentially uncoupled from basin formation and structure. The objectives of this study are to use new high- resolution data (images, gravity, topography, and com- position) to reassess Australe’s mare deposits, deter- mine the timing and style of volcanism, identify discrete basalt deposits, and to further characterize the evolution of magmatism and subsurface structure in this area. Here, we focus on the northern Australe deposits (between Humboldt, Jenner, and Milne). As originally noted by Whitford-Stark (1979), Humboldt crater and its ejecta make an excellent stratigraphic marker that can be traced across much of the Australe region. The ejecta serves as a stratigraphic constraint for absolute model ages (AMAs) derived from crater size-frequency distributions (CSFDs).

Stopar, J. D.↗

Larmor power limit for cyclotron radiation of relativistic particles in a waveguide

Cyclotron radiation emission spectroscopy (CRES) is a modern technique for high-precision energy spectroscopy, in which the energy of a charged particle in a magnetic field is measured via the frequency of the emitted cyclotron radiation. The He6-CRES collaboration aims to use CRES to probe beyond the standard model physics at the TeV scale by performing high-resolution and low-background beta-decay spectroscopy of 6 He and 19 Ne. Having demonstrated the first observation of individual, high-energy (0.1–2.5 MeV) positrons and electrons via their cyclotron radiation, the experiment provides a novel window into the radiation of relativistic charged particles in a waveguide via the time-derivative (slope) of the cyclotron radiation frequency, df c /dt. We show that analytic predictions for the total cyclotron radiation power emitted by a charged particle in circular and rectangular waveguides are approximately consistent with the Larmor formula, each scaling with the Lorentz factor of the underlying e ± as γ 4 . This hypothesis is corroborated with experimental CRES slope data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Methods for Assessing Opportunities for Ring Dam Pumped Storage Hydropower

There is growing interest in new pumped storage hydropower (PSH) deployment to provide a range of grid flexibility, reliability, and resiliency services under an evolving and uncertain future power sector. The National Laboratory of the Rockies develops open PSH resource assessment and cost modeling tools to help evaluate PSH deployment opportunities, and this report describes expansions to those tools to consider an additional PSH system configuration - ring-dam reservoirs built on flat topographical features that are constructed from roller-compacted concrete material. This reservoir type is common among current PSH proposals and requires new methods to identify sites with this reservoir geometry throughout the United States and characterize the associated dam cost. Cost characterization for ring dam reservoirs required collecting historical dam cost data for earthen, rockfill, and roller-compacted concrete dams and regressing equations that relate costs between alternative materials. The ring dam site identification algorithm follows a 5-step procedure to identify circular geometry reservoirs. Once ring dam reservoirs are identified, they are then paired with potential dry-gully reservoirs, and the full set of potential paired reservoirs is cost-optimized to produce a least-cost set of potential PSH sites with no overlapping reservoirs. The resulting analysis found 1,663 ring-dam to dry-gully systems in the contiguous United States that are lower cost than any overlapping dry-gully to dry-gully systems, 29 in Alaska, and none in Hawaii or Puerto Rico. These systems constitute 1.5 TW of capacity in the contiguous United States and nearly 29 GW in Alaska, demonstrating that under suitable topography and head, ring-dam systems can provide cost-effective PSH opportunities. The greatest density of these opportunities are found in the intermountain west where there are mesas and flat land at bases of mountain ranges, but continued work could incorporate additional site characteristics or consider more complex reservoir shapes to find additional PSH deployment opportunities.

13 HYDRO ENERGY↗