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DOE OSTI2019

Novel Representation of Leaf Phenology Improves Simulation of Amazonian Evergreen Forest Photosynthesis in a Land Surface Model

Leaf phenology in the humid tropics largely regulates the seasonality of forest carbon and water exchange. However, it is inadequately represented in most global land surface models due to limited understanding of its controls. Based on intensive field studies at four Amazonian evergreen forests, we propose a novel, quantitative representation of tropical forest leaf phenology, which links multiple environmental variables with the seasonality of new leaf production and old leaf litterfall. The new phenology simulates higher rates of leaf turnover (new leaves replacing old leaves) in dry seasons with more sunlight, which is then implemented in ORCHIDEE, together with recent findings of ontogeny-associated photosynthetic capacity, and is evaluated against ground-based measurements of leaf phenology (canopy leaf area index and litterfall), eddy covariance fluxes (photosynthesis and latent heat), and carbon allocations from field observations. Results show the periodical cycles of solar radiation and vapor pressure deficit are the two most important environmental variables that are empirically related to new leaf production and old leaf abscission in tropical evergreen forests. The model with new representation of leaf phenology captures the seasonality of canopy photosynthesis at three out of four sites, as well as the seasonality of litterfall, latent heat, and light use efficiency of photosynthesis at all tested sites, and improves the seasonality of carbon allocations to leaves, roots, and sapwoods. This study advances understanding of the environmental controls on tropical leaf phenology and offers an improved modeling tool for gridded simulations of interannual CO 2 and water fluxes in the tropics.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Non-linearities in the Lyman-α forest and in its cross-correlation with dark matter halos

Here three-dimensional correlations of the Lyman-α (Lyα) forest and cross correlations between the Lyα forest and quasars have been measured on large scales, allowing a precise measurement of the baryon acoustic oscillation (BAO) feature at redshifts z > 2. These 3D correlations are often modelled using linear perturbation theory, but full-shape analyses to extract cosmological information beyond BAO will require more realistic models capable of describing non-linearities present at smaller scales. We present a measurement of the Lyα forest flux power spectrum from large hydrodynamic simulations — the Sherwood simulations — and compare it to different models describing the small-scale deviations from linear theory. We confirm that the model presented in Arinyo-i-Prats et al. (2015) fits the measured 3D power up to k = 10 h Mpc -1 with an accuracy better than 5%, and show that the same model can also describe the 1D correlations with similar precision. We also present, for the first time, an equivalent study for the cross-power spectrum of halos with the Lyα forest, and we discuss different challenges we face when modelling the cross-power spectrum beyond linear scales. We make all our measured power spectra public in https://github.com/andreufont/sherwoo_p3d. This study is a step towards joint analyses of 1D and 3D flux correlations, and towards using the quasar-Lyα cross-correlation beyond BAO analyses.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Measurement of the small-scale 3D Lyman- α forest power spectrum

Small-scale correlations measured in the Lyman-α (Lyα) forest encode information about the intergalactic medium and the primordial matter power spectrum. In this article, we present and implement a simple method to measure the 3-dimensional power spectrum, P 3D , of the Lyα forest at wavenumbers k corresponding to small, ~ Mpc scales. In order to estimate P 3D from sparsely and unevenly distributed data samples, we rely on averaging 1-dimensional Fourier Transforms, as previously carried out to estimate the 1-dimensional power spectrum of the Lyα forest, P 1D . Further, this methodology exhibits a very low computational cost. We confirm the validity of this approach through its application to Nyx cosmological hydrodynamical simulations. Subsequently, we apply our method to the eBOSS DR16 Lyα forest sample, providing as a proof of principle, a first P 3D measurement averaged over two redshift bins z = 2.2 and z = 2.4. This work highlights the potential for forthcoming P 3D measurements, from upcoming large spectroscopic surveys, to untangle degeneracies in the cosmological interpretation of P 1D .

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Characterization of contaminants in the Lyman-alpha forest auto-correlation with DESI

Baryon Acoustic Oscillations can be measured with sub-percent precision above redshift two with the Lyman-α (Lyα) forest auto-correlation and its cross-correlation with quasar positions. This is one of the key goals of the Dark Energy Spectroscopic Instrument (DESI) which started its main survey in May 2021. We present in this paper a study of the contaminants to the Lyα forest which are mainly caused by correlated signals introduced by the spectroscopic data processing pipeline as well as astrophysical contaminants due to foreground absorption in the intergalactic medium. Notably, an excess signal caused by the sky background subtraction noise is present in the Lyα auto-correlation in the first line-of-sight separation bin. We use synthetic data to isolate this contribution, we also characterize the effect of spectro-photometric calibration noise, and propose a simple model to account for both effects in the analysis of the Lyα forest. We then measure the auto-correlation of the quasar flux transmission fraction of low redshift quasars, where there is no Lyα forest absorption but only its contaminants. We demonstrate that we can interpret the data with a two-component model: data processing noise and triply ionized Silicon and Carbon auto-correlations. This result can be used to improve the modeling of the Lyα auto-correlation function measured with DESI.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Probing the limits of cosmological information from the Lyman- α forest 2-point correlation functions

The standard cosmological analysis with the Lyα forest relies on a continuum fitting procedure that suppresses information on large scales and distorts the three-dimensional correlation function on all scales. In this work, we present the first cosmological forecasts without continuum fitting distortion in the Lyα forest, focusing on the recovery of large-scale information. Using idealized synthetic data, we compare the constraining power of the full shape of the Lyα forest auto-correlation and its cross-correlation with quasars using the baseline continuum fitting analysis versus the true continuum. We find that knowledge of the true continuum enables a ∼ 10% reduction in uncertainties on the Alcock-Paczyński (AP) parameter and the matter density, Ω m . We also explore the impact of large-scale information by extending the analysis up to separations of 240 h -1 Mpc along and across the line of sight. The combination of these analysis choices can recover significant large-scale information, yielding up to a ∼ 15% improvement in AP constraints. This improvement is analogous to extending the Lyα forest survey area by ∼ 40%.

Lyman alpha forest↗

DOE OSTI2014

Disturbance legacies and climate jointly drive tree growth and mortality in an intensively studied boreal forest

How will regional growth and mortality change with even relatively small climate shifts, even independent of catastrophic disturbances? This question is particularly acute for the North American boreal forest, which is carbon-dense and subject The goals of this study were to combine dendrochronological sampling, inventory records, and machine-learning algorithms to understand how tree growth and death have changed at one highly studied site (Northern Old Black Spruce, NOBS) in the central Canadian boreal forest. Over the 1999-2012 inventory period, mean DBH increased even as stand density and basal area declined significantly from 41.3 to 37.5 m2 ha-1. Tree mortality averaged 1.4±0.6% yr-1, with most mortality occurring in medium-sized trees. A combined tree ring chronology constructed from 2001, 2004, and 2012 sampling showed several periods of extreme growth depression, with increased mortality lagging depressed growth by ~5 years. Minimum and maximum air temperatures exerted a negative influence on tree growth, while precipitation and climate moisture index had a positive effect; both current- and previous-year data exerted significant effects. Models based on these variables explained 23-44% of the ring-width variability. There have been at least one, and probably two, significant recruitment episodes since stand initiation, and we infer that past climate extremes led to significant NOBS mortality still visible in the current forest structure. These results imply that a combination of successional and demographic processes, along with mortality driven by abiotic factors, continue to affect the stand, with significant implications for our understanding of previous work at NOBS and the sustainable management of regional forests.

black spruce↗

DOE OSTI2021

Low-intensity frequent fires in coniferous forests transform soil organic matter in ways that may offset ecosystem carbon losses

The impact of shifting disturbance regimes on soil carbon (C) storage is a key uncertainty in global change research. Wildfires in coniferous forests are becoming more frequent in many regions, potentially causing large C emissions. Repeated low-intensity prescribed fires can mitigate wildfire severity, but repeated combustion may decrease soil C unless compensatory responses stabilize soil organic matter. Here, we tested how 30 years of decadal prescribed burning affected C and nitrogen (N) in plants, detritus, and soils in coniferous forests in the Sierra Nevada mountains, USA. Tree basal area and litter stocks were resilient to fire, but fire reduced forest floor C by 77% (-36.4 Mg C/ha). In mineral soils, fire reduced C that was free from minerals by 41% (-4.4 Mg C/ha) but not C associated with minerals, and only in depths ≤ 5 cm. Fire also transformed the properties of remaining mineral soil organic matter by increasing the proportion of C in a pyrogenic form (from 3.2% to 7.5%) and associated with minerals (from 46% to 58%), suggesting the remaining soil C is more resistant to decomposition. Laboratory assays illustrated that fire reduced microbial CO2 respiration rates by 55% and the activity of eight extracellular enzymes that degrade cellulosic and aromatic compounds by 40–66%. Lower decomposition was correlated with lower inorganic N (-49%), especially ammonium, suggesting N availability is coupled with decomposition. The relative increase in forms of soil organic matter that are resistant to decay or stabilized onto mineral surfaces, and the associated decline in decomposition suggest that low-intensity fires may promote mineral soil C storage in pools with long mean residence times in coniferous forests.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

The effect of repeated hurricanes on the age of organic carbon in humid tropical forest soil

Abstract Increasing hurricane frequency and intensity with climate change is likely to affect soil organic carbon (C) stocks in tropical forests. We examined the cycling of C between soil pools and with depth at the Luquillo Experimental Forest in Puerto Rico in soils over a 30‐year period that spanned repeated hurricanes. We used a nonlinear matrix model of soil C pools and fluxes (“soilR”) and constrained the parameters with soil and litter survey data. Soil chemistry and stable and radiocarbon isotopes were measured from three soil depths across a topographic gradient in 1988 and 2018. Our results suggest that pulses and subsequent reduction of inputs caused by severe hurricanes in 1989, 1998, and two in 2017 led to faster mean transit times of soil C in 0–10 cm and 35–60 cm depths relative to a modeled control soil with constant inputs over the 30‐year period. Between 1988 and 2018, the occluded C stock increased and δ 13 C in all pools decreased, while changes in particulate and mineral‐associated C were undetectable. The differences between 1988 and 2018 suggest that hurricane disturbance results in a dilution of the occluded light C pool with an influx of young, debris‐deposited C, and possible microbial scavenging of old and young C in the particulate and mineral‐associated pools. These effects led to a younger total soil C pool with faster mean transit times. Our results suggest that the increasing frequency of intense hurricanes will speed up rates of C cycling in tropical forests, making soil C more sensitive to future tropical forest stressors.

14C↗

DOE OSTI2016

Informing models through empirical relationships between foliar phosphorus, nitrogen and photosynthesis across diverse woody species in tropical forests of Panama

Here, our objective was to analyze and summarize data describing photosynthetic parameters and foliar nutrient concentrations from tropical forests in Panama to inform model representation of phosphorus (P) limitation of tropical forest productivity. Gas exchange and nutrient content data were collected from 144 observations of upper canopy leaves from at least 65 species at two forest sites in Panama, differing in species composition, rainfall and soil fertility. Photosynthetic parameters were derived from analysis of assimilation rate vs internal CO 2 concentration curves ( A/C i ), and relationships with foliar nitrogen (N) and P content were developed. The relationships between area-based photosynthetic parameters and nutrients were of similar strength for N and P and robust across diverse species and site conditions. The strongest relationship expressed maximum electron transport rate (J max ) as a multivariate function of both N and P, and this relationship was improved with the inclusion of independent data on wood density. Models that estimate photosynthesis from foliar N would be improved only modestly by including additional data on foliar P, but doing so may increase the capability of models to predict future conditions in P-limited tropical forests, especially when combined with data on edaphic conditions and other environmental drivers.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Forest regeneration within Earth system models: current process representations and ways forward

Earth system models must predict forest responses to global change in order to simulate future global climate, hydrology, and ecosystem dynamics. These models are increasingly adopting vegetation demographic approaches that explicitly represent tree growth, mortality, and recruitment, enabling advances in the projection of forest vulnerability and resilience, as well as evaluation with field data. To date, simulation of regeneration processes has received far less attention than simulation of processes that affect growth and mortality, in spite of their critical role maintaining forest structure, facilitating turnover in forest composition over space and time, enabling recovery from disturbance, and regulating climate-driven range shifts. Here, our critical review of regeneration process representations within current Earth system vegetation demographic models reveals the need to improve parameter values and algorithms for reproductive allocation, dispersal, seed survival and germination, environmental filtering in the seedling layer, and tree regeneration strategies adapted to wind, fire, and anthropogenic disturbance regimes. These improvements require synthesis of existing data, specific field data-collection protocols, and novel model algorithms compatible with global-scale simulations. Vegetation demographic models offer the opportunity to more fully integrate ecological understanding into Earth system prediction; regeneration processes need to be a critical part of the effort.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Future climate doubles the risk of hydraulic failure in a wet tropical forest

Summary Future climate presents conflicting implications for forest biomass. We evaluate how plant hydraulic traits, elevated CO 2 levels, warming, and changes in precipitation affect forest primary productivity, evapotranspiration, and the risk of hydraulic failure. We used a dynamic vegetation model with plant hydrodynamics (FATES‐HYDRO) to simulate the stand‐level responses to future climate changes in a wet tropical forest in Barro Colorado Island, Panama. We calibrated the model by selecting plant trait assemblages that performed well against observations. These assemblages were run with temperature and precipitation changes for two greenhouse gas emission scenarios (2086–2100: SSP2‐45, SSP5‐85) and two CO 2 levels (contemporary, anticipated). The risk of hydraulic failure is projected to increase from a contemporary rate of 5.7% to 10.1–11.3% under future climate scenarios, and, crucially, elevated CO 2 provided only slight amelioration. By contrast, elevated CO 2 mitigated GPP reductions. We attribute a greater variation in hydraulic failure risk to trait assemblages than to either CO 2 or climate. Our results project forests with both faster growth (through productivity increases) and higher mortality rates (through increasing rates of hydraulic failure) in the neo‐tropics accompanied by certain trait plant assemblages becoming nonviable.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Soil Chamber Fluxes (CO2 and CH4) across a catena in the Luquillo Experimental Forest, Puerto Rico

Wet tropical forest soils contribute significantly to global emissions of carbon dioxide (CO2) and methane (CH4). Landscape topography largely influences the rate of CO2 versus CH4 emissions from wet tropical forest soils. This dataset contains soil chamber fluxes of CO2 and CH4 from 2016 (April 5 through July 18) across a catena in the Luquillo Experimental Forest, Puerto Rico. Soil CO2 fluxes followed the trend of ridge>slope>valley. However, soil CH4 emissions followed the opposite trend, where valley soils served as the major source of CH4 emissions. This dataset can improve our understanding of greenhouse gas (CO2 and CH4) emissions associated with complex topography in wet tropical forest soils.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Data for Regier et al. (2025), "Short-term experimental flooding impacts soil biogeochemistry but not aboveground vegetation in a coastal forest"

Rising sea levels and intensifying storms increase flooding pressure on coastal forests, but the mechanisms that drive coastal forest mortality remain unclear. This study used an ecosystem-scale manipulation (TEMPEST, Terrestrial Ecosystem Manipulation to Probe the Effects of Storm Treatments) to simulate hurricane-level flooding of a coastal forest and explore the individual and interactive impacts of inundation and salinity. This dataset comprises the results reported by Regier et al. (2025) in their paper "Short-term experimental flooding impacts soil biogeochemistry but not aboveground vegetation in a coastal forest." It consists of measurements of:- Belowground conductance- Soil dissolved oxygen and redox- Soil and tree greenhouse gas fluxes- Leaf photosynthesis, stomatal conductance, and intercellular carbon dioxide- Sap flux- Soil volumetric water content and electrical conductivityAll files are plain-text CSV (comma separated value) and no special software is required to read them.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2017

Modeling the temporal dynamics of nonstructural carbohydrate pools in forest trees

Trees store carbohydrates, in the form of sugars and starch, as reserves to be used to power both future growth as well as to support day-to-day metabolic functions. These reserves are particularly important in the context of how trees cope with disturbance and stress—for example, as related to pest outbreaks, wind or ice damage, and extreme climate events. In this project, we measured the size of carbon reserves in forest trees, and determined how quickly these reserves are used and replaced—i.e., their “turnover time”. Our work was conducted at Harvard Forest, a temperate deciduous forest in central Massachusetts. Through field sampling, laboratory-based chemical analyses, and allometric modeling, we scaled these measurements up to whole-tree NSC budgets. We used these data to test and improve computer simulation models of carbon flow through forest ecosystems. Our modeling focused on the mathematical representation of these stored carbon reserves, and we examined the sensitivity of model performance to different model structures. This project contributes to DOE’s goal to improve next-generation models of the earth system, and to understand the impacts of climate change on terrestrial ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Waste to Wisdom: Utilizing Forest Residues for the Production of Bioenergy and Biobased Products

The Waste to Wisdom project was part of the Biomass Research and Development Initiative (BRDI) and funded by the Department of Energy (DE-EE0006297) at an amount of $5.8 million. Our interdisciplinary research team, consisting of academics, business professionals, and land managers, worked together for about four years (September 2013 to December 2017) to: 1) conduct field-based experiments to develop innovative tools and systems that improve the economics, accessibility, and production of quality feedstocks from forest residues, 2) develop and test stand-alone in-woods or near-the forest biomass conversion technologies (BCTs) for the production of biochar, torrefied wood, and briquettes, and 3) perform analyses to evaluate the economic feasibility of commercial deployment of BCTs and to quantify the life cycle economic and environmental benefits of utilizing forest residues with BCTs for the production of bioenergy and bioproducts. The research papers presented in this Special Issue cover key aspects of the research efforts and findings made by the project team. We encourage the audience to visit the project web site (http://wastetowisdom.com/) to learn more about the team’s research on feedstock development, biomass conversion technologies, and the financial and environmental benefits of utilizing forest residues for production of bioenergy and biobased products.

09 BIOMASS FUELS↗

DOE OSTI2013

Empirical and process-based approaches to climate-induced forest mortality models

Globally, forests store ~45% of carbon sequestered terrestrially, contribute more to the terrestrial sink per area than any other land cover type, and assimilate an important portion of anthropogenic emissions. Forests exert strong biophysical control on climate via surface energy balance, and the hydrological cycle. Widespread forest mortality in response to drought, increased temperatures, and infestation of tree pests has been observed globally, potentially threatening forests' regulation of climate. This threat has prompted great interest in understanding and predicting tree mortality due to climate variability and change, especially drought. Initial tests of hydraulic failure (mortality caused by irreversible loss of xylem conductivity from air embolism), carbon starvation (mortality due to carbohydrate limitation), insect attacks, wildfire, and their interdependence, suggest proximal causes of mortality are likely complex, co-occurring, interrelated, and variable with tree species. While the interdependent roles of carbon and water in plant mortality are consistently observed, this work is continuously prompting new questions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Lifecycle Assessment and Techno-Economic Analysis of Biochar Pellet Production from Forest Residues and Field Application

Biochar produced from low-value forest biomass can provide substantial benefits to ecosystems and mitigate climate change-induced risks such as forest fires. Forest residues from restoration activities and timber harvest and biochar itself are bulky and thus incur high logistic costs, so are considered major bottlenecks for the commercialization of the biochar industry. The objectives of this study were to assess the environmental footprints and techno-economic feasibility of converting forest residues in Pacific Northwest United States into biochar pellets using portable systems followed by delivery of the final product to end-users for land application (dispersion). Two portable systems (Biochar Solutions Incorporated (BSI) and Air Curtain Burner (ACB)) were considered for biochar production. A cradle-to-grave lifecycle assessment (LCA) and a discounted cash flow analysis method were used to quantify the environmental impacts and minimum selling price (MSP) of biochar. The global warming (GW) impact of biochar production through BSI and ACB was estimated to be 306–444, and 750–1016 kgCO₂eq/tonne biochar applied to the field, respectively. The MSP of biochar produced through BSI and ACB was 1674–1909 and 528–1051 USD/tonne biochar applied to the field, respectively. Pelletizing of biochar reduced GW impacts during outbound logistics (~8–20%) but increased emissions during pelletizing (~1–9%). Results show the BSI system was a more viable option in terms of GW impact, whereas the ACB system can produce biochar with lower MSP. The results of the study conclude that the production of biochar pellets through the two portable systems and applied to fields can be both an environmentally beneficial and economically viable option.

09 BIOMASS FUELS↗

NASA NTRS1994

(abstract) Characterization of Tree Water Status and Dielectric Constant Changes of North American Boreal Forests in Combination with Synthetic Aperture Radar Remote Sensing

The occurrence and magnitude of temporal and spatial tree water status changes in the boreal environment were studied in a floodplain forest in Alaska and in four forest types of Central Canada. Under limited water supply conditions from the rooted soil zone in early spring (freeze/thaw transition) and during summer, trees show declining water potentials. Coincidental change in tree water potential, tree transpiration and tree dielectric constant had been observed in previous studies performed in Mediterranean ecotones. If radar is sensitive to chances in tree water status as reflected through changes in dielectric constant, then radar remote sensing could be used to monitor the water status of forests. The SAR imagery is examined to determine the response of the radar backscatter to the ground based observations of the water status of forest canopies. Comparisons are made between stands and also along the large North-South gradient between sites. Data from SAR are used to examine the radar response to canopy physiological state as related to vegetation freeze/thaw and growing season length.

remote sensing imaging↗