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At least 775 records · Page 43

MAMA Software User Guide: Tips for Segmenting with MAMA

This document reviews the six ways to segment with the MAMA software. Mama is not a threshold based segmentation system, like many of the image analyses programs you may be have used in the past. The MAMA software is set up to allow you to segment iteratively, and do so in a variety of ways. Six different ways are show below. They can be used in almost any combination—sometimes the choice depends on the image, sometimes it depends on user preferences for what type of interactions a user is willing to do. In the examples below, by “easy”, we mean an image for which MAMA segmentation works great and little clean-up is needed. By hard image, we mean an image for which accurate segmentation is very challenging. Many metal micrographs, and particles with rough textures fall into this class.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

On a Thermodynamic Approach to Material Selection for Service in Aggressive Multi-Component Gaseous and/or Vapor Environments

This report fulfills the M4 milestone, M4FT-15IN08020110 UNF Analysis Support, under Work Package Number FT-15IN080201. The issue of materials selection for many engineering applications represents an important problem, particularly in cases where material failure is possible as a result of corrosive environments. For example, 304 dual purpose or 316 stainless steel is used in the construction of many used nuclear fuel storage canisters. Deployed all over the world, these canisters are housed inside shielded enclosures and cooled passively by convective airflow. When located along seaboards or particular industrial areas, salt, other corrosive chemicals, and moisture can become entrained in the air that cools the canisters. It is important to develop an understanding of what impact, if any, that chemical environment will have on those canisters. In many cases of corrosion in aggressive gaseous environments, the material selection process is based on some general recommendations, anecdotal evidence, and/or the past experience of that particular project’s participants. For gaseous mixtures, the theoretical basis is practically limited to the construction of the so-called “Ellingham diagrams” for pure metals. These plots predict the equilibrium temperature between different individual metals, their respective oxides, and oxygen gas. Similar diagrams can be constructed for the reactions with sulfur, nitrogen, carbon, etc. In the generalization of this approach by Richardson and Jeffes, additional scales can be superimposed upon an Ellingham diagram that would correspond to different gaseous mixtures, e.g. CO/CO 2 , or H 2 /H 2 O. However, while the general approach to predicting the stability of a multi-component heterogeneous alloy (e.g., steel or a superalloy) in a multi-component aggressive gaseous environment was developed in very general form, actual examples of its applications to concrete real-life problems are practically absent. This is related to alloy design, corrosion protection, and material selection for different applications. In this work, an effort was made to advance in that direction using modern computational thermodynamics methodology, software, and databases by Thermo-Calc Inc. The developed methodology is illustrated by the case study – a process of nuclear waste immobilization using a chemical engineering approach described below. The developed methodology can be considered a practical illustration of the Ellingham approach generalization and could be used for obtaining thermodynamic guidance on a given process’ feasibility using equipment/sensors made of a particular multicomponent heterogeneous metallic alloy.

36 MATERIALS SCIENCE↗

PIMAL: Phantom wIth Moving Arms and Legs Version 4.1.0

Computational phantoms with articulated arms and legs have been developed to enable radiation dose estimation for male and female receptors in different postures. Using a user-friendly graphical user interface (GUI), the PIMAL (Phantom wIth Moving Arms and Legs) software can be employed to adjust the posture of a phantom, generate a corresponding input file for the Monte Carlo N-Particle (MCNP®) radiation transport code, and perform the radiation transport simulations for the dose calculations in MCNP®. The MCNP® code can be run natively from the PIMAL interface or externally in the MCNP® command prompt via the generated MCNP® PIMAL input file.

61 RADIATION PROTECTION AND DOSIMETRY↗

FLOP for FLAG Output Plotting

The Los Alamos hydrodynamics code, FLAG, is capable of dumping many types of output for many different variables in an array of formats. While some outputs are best viewed in a multidimensional engineering analysis visualization software, others are best viewed as 1-D “this versus that” curves. During development of a FLAG model, it is frequently required to quickly assess a model’s performance by reviewing such curves, and doing so may involve writing scripts repeatedly, adapting them each time to a specific model’s parameters. This report describes an application developed specifically to improve user efficiency in reviewing 1-D curve dumps from FLAG.

42 ENGINEERING↗

National Ignition Facility. Facility and Infrastructure Systems Maintenance Plan

Ensuring the reliability of the NIF, including its support systems, laser systems, target diagnostic systems, and utilities, is essential to the availability of the NIF in its support of NNSA missions. NIF is a key capability in the DOE Stockpile Stewardship Program and supports high energy physics experiments for nuclear weapons, energy, and astrophysics applications. High system reliability provides opportunities for shots and scientific discoveries with opportunities to enhance and upgrade capabilities. This Maintenance Plan (MP) identifies the policies and procedures used to perform and support asset management of the NIF Facility and Infrastructure Systems (FInS), NIF Lasers & Alignment (LASE), NIF Target Experimental Operations (TOPS), NIF Target Area Science and Engineering (TASE), and NIF&PS Control Systems (NCS). The FInS systems include the facility, HVAC, contamination control, beampath, and Line Replaceable Units (LRUs) as well as utilities which create the beampath environments, such as vacuum, argon, or clean dry air. The LASE systems are Programmatic systems which include laser diagnostics, alignment, power conditioning, pulsed power, and input laser systems. The TOPS and TASE systems are also Programmatic systems which include target and diagnostic delivery systems and positioners, many different insertable and fixed target diagnostics, and cryogenic and target gas fill systems. Finally, the NCS systems include both software and hardware for industrial and shot operation control systems. Policies governing administrative and operational practices related to maintenance of FInS, LASE, TOPS, TASE, and NCS systems are described in this plan. In addition, the plan provides processes and procedures for managing, tracking, and documenting the work. This document, the NIF Operations Management Plan, NIF-5020544 (Ref. 1), and NIF Shot Operations Plan, NIF-5018506 (Ref. 2), together satisfy the requirements of the Conduct of Operations. Duties, responsibilities, and reporting requirements of the various positions associated with FInS, LASE, and TOPS maintenance are detailed in this plan. The FInS systems include both Real Property systems with asset management requirements specified in DOE Order 430.1C (Ref. 3) and Programmatic systems. In addition, for FInS, there is a list of the System Level Maintenance Plans (SLMPs) in NIF-1007419198 (Ref. 4) which provide the system descriptions and maintenance plan and schedule. In addition, the list includes the Reliability Centered Maintenance (RCM) and Experience Centered Maintenance (ECM) evaluations that have been performed for applicable FInS systems as well as reliability criticality per Section 3.5. The -AM version of the NIF Maintenance Plan focuses on the reliability program for FInS, LASE, TOPS, TASE, and NCS within the context of the overall NIF Reliability, Availability, and Maintainability (RAM) program and incorporates changes since the -AL version from August 2011 and has been updated to be fully consistent with the updates to Ref. 1. It also includes asset management considerations, updates to the Work Order (WO) process within the NIF Computerized Maintenance Management System (CMMS) which is EAM infor® System Maintenance and Reliability Tracking (SMaRT) (Ref. 5), and updates to metrics and key performance indicators (KPIs).

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Chemical Reactivity Through Adaptive Quantum Mechanics/Many-Body Representations: Theoretical Development, Software Implementation, and Applications (Final Report)

The main objective of this research project was the development and application of a new theoretical/computational framework to model chemical transformations and electronic excitations in fluid mixtures across different phases. Our theoretical/computational framework combines our data-driven many-body (DD-MB) potentials representing molecular interactions with adaptive schemes for modeling chemical reactions in solution. The combination of these two components resulted in an adaptive quantum mechanics/many-body (adQM/MB) method that largely suppresses discontinuities between QM and MM regions, which affect existing QM/MM methods, and thus provides an accurate representation of both quantum mechanical and environmental effects through a rigorous description of mutual polarization between QM and MM regions. The implementation of our DD-MB potentials and adQM/MB method in popular software enabled computer simulations of solvation phenomena, reactive processes, and electronic excitations in fluid mixtures with chemical and spectroscopic accuracy, representing a major step toward realistic computer simulations of a wide range of molecular systems relevant to the DOE mission.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Modeling variability in porescale multiphase flow experiments

Microfluidic devices and porescale numerical models are commonly used to study multiphase flow in biological, geological, and engineered porous materials. In this work, we perform a set of drainage and imbibition experiments in six identical microfluidic cells to study the reproducibility of multiphase flow experiments. We observe significant variations in the experimental results, which are smaller during the drainage stage and larger during the imbibition stage. We demonstrate that these variations are due to sub-porescale geometry differences in microcells (because of manufacturing defects) and variations in the boundary condition (i.e.,fluctuations in the injection rate inherent to syringe pumps). Computational simulations are conducted using commercial software STAR-CCM+, both with constant and randomly varying injection rate. Stochastic simulations are able to capture variability in the experiments associated with the varying pump injection rate.

54 ENVIRONMENTAL SCIENCES↗

EPRI Software for Estimating Decommissioning Waste Volumes - 16046

EPRI has adapted computer software that can estimate the volume and activity content of waste resulting from the dismantlement of nuclear facilities. This software, designated as Automatic Estimation of the Radiological Inventory or AERI, was originally developed by Iberdrola for use by ENRESA in Spain. The software estimates the radiological inventory for all the components and civil structures of the plant or other facility that are included in the physical inventory. The radiological inventory shows the internal and external surface contamination, as well as the volumetric contamination. The processes of the software are able to estimate both the specific activity levels (in Bq/g or pCi/g) for each radionuclide and the surface activity (Bq/cm{sup 2} or dpm/100 cm{sup 2}) for components and civil structures located in the radiological areas. AERI allows the user to extrapolate, through a statistical approach, the contamination levels obtained by sampling data in specific components and civil structures to the entire facility. The main benefits and values obtained with AERI are the following: - The radiological inventory of the plant can be obtained from a limited set of radiological sampling data. Using the mathematical models allows for the optimization of the number of sampling and analysis that needs to be done. The uncertainties of the calculations are reduced with more data. The user must balance the level of uncertainty of the calculations and the number of sample data they will use. - The automatic management of radiological data in short computing times allows for the execution of several scenarios in a reasonable time. Therefore, different radioactive waste and decommissioning hypotheses can be tested. For example, inventory and data can be split into two different set. One of them can be used for obtaining radiological inventory for early dismantling (3 years, as example) and the second one for deferred dismantling (25 years.) - The software supports the planning and implementation of decommissioning strategies for nuclear plants. For instance, several decontamination factors can be evaluated, assuming different level for decontamination of materials, and results for materials from several streams and use of different container types may be included in each evaluation. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Computational tools and algorithms for ion mobility spectrometry-mass spectrometry

Ion mobility spectrometry-mass spectrometry (IMS-MS or IM-MS) is a powerful analytical technique that combines the gas-phase separation capabilities of IM with the identification and quantification capabilities of MS. IM-MS can differentiate molecules with indistinguishable masses but different structures (e.g., isomers, isobars, molecular classes, and contaminant ions). The importance of this analytical technique is reflected by a staged increase in the number of applications for molecular characterization across a variety of fields, from different MS-based omics (proteomics, metabolomics, lipidomics, etc.) to the structural characterization of glycans, organic matter, proteins, and macromolecular complexes. With the increasing application of IM-MS there is a pressing need for effective and accessible computational tools. This article presents an overview of the most recent free and open-source software tools specifically tailored for the analysis and interpretation of data derived from IM-MS instrumentation. This review enumerates these tools and outlines their main algorithmic approaches, while highlighting representative applications across different fields. Finally, a discussion of current limitations and expectable improvements is presented.

59 BASIC BIOLOGICAL SCIENCES↗

Guidelines for effective radiation transport for cable SGEMP modeling

This report describes experiences gained in performing radiation transport computations with the SCEPTRE radiation transport code for System Generated ElectroMagnetic Pulse (SGEMP) applications. SCEPTRE is a complex code requiring a fairly sophisticated user to run the code effectively, so this report provides guidance for analysts interested in performing these types of calculations. One challenge in modeling coupled photon/electron transport for SGEMP is to provide a spatial mesh that is sufficiently resolved to accurately model surface charge emission and charge deposition near material interfaces. The method that has been most commonly used to date to compute cable SGEMP typically requires a sub-micron mesh size near material interfaces, which may be difficult for meshing software to provide for complex geometries. We present here an alternative method for computing cable SGEMP that appears to substantially relax this requirement. The report also investigates the effect of refining the energy mesh and increasing the order of the angular approximation to provide some guidance on determining reasonable parameters for the energy/angular approximation needed for x-ray environments. Conclusions for γ-ray environments may be quite different and will be treated in a subsequent report. In the course of the energy-mesh refinement studies, a bug in the cross-section generation software was discovered that may cause underprediction of the result by as much as an order of magnitude for the test problem studied here, when the electron energy group widths are much smaller than those for the photons. Results will be presented and compared using cross sections generated before and after the fix. We also describe adjoint modeling, which provides sensitivity of the total charge drive to the source energy and angle of incidence, which is quite useful for comparing the effect of changing the source environment and for determining most stressing angle of incidence and source energy. This report focusses on cable SGEMP applications, but many of the conclusions will be directly applicable for box Internal ElectroMagnetic Pulse (IEMP) modeling as well.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

TDEP: Temperature Dependent Effective Potentials

The Temperature Dependent Effective Potential (TDEP) method is a versatile and efficient approach to include temperature in ab initio materials simulations based on phonon theory. TDEP can be used to describe thermodynamic properties in classical and quantum ensembles, and several response properties ranging from thermal transport to Neutron and Raman spectroscopy. A stable and fast reference implementation is given in the software package of the same name described here. The underlying theoretical framework and foundation is briefly sketched with an emphasis on discerning the conceptual difference between bare and effective phonon theory, in both self-consistent and non-self-consistent formulations. References to numerous applications and more in-depth discussions of the theory are given.

36 MATERIALS SCIENCE↗

Multi–LDAP Dynamic User Management Tool Utilizing Oracle Application Express and PL/SQL

A Center for Infrastructure Security Analysis (CISA) client system required support of multiple Lightweight Directory Access Protocol (LDAP) directories for multiple, varied user communities. The LDAP directories were all based upon different technologies, i.e., Microsoft Active Directory (AD), Microsoft Active Directory Lightweight Directory Services (ADLDS), and Oracle Internet Directory (OID), depending on system setup, security requirements, and legacy software. Research revealed that PL/SQL provided the capability to execute dynamic PL/SQL and SQL blocks. The dynamic capabilities were utilized along with several configuration tables to provide an object-oriented, polymorphic-like behavior. This architecture was chosen so that a top-level application programming interface (API) could be defined for all calls, no matter what type of LDAP was being manipulated, as each LDAP type has slightly different attributes and requirements. The dynamic nature of the user management system allowed for easy setup and utilization of any new LDAP directories, minimizing the time and effort expended on system changes.

97 MATHEMATICS AND COMPUTING↗

Hardware Aware Mitigation of Timing Side-Channel Vulnerabilities in Critical Infrastructure Software

Program runtime/timing attacks exploit variations in a program’s execution times to extract sensitive information from the program (e.g. encryption keys, sensitive variable data, intellectual property). State-of-the-art solutions to runtime sidechannel attacks attempt to balance the execution time of the sensitive code for different control flow paths to eliminate the timing leakage. However, during the mitigation process, most techniques do not consider the underlying hardware/device on which the target program is supposed to run on. This can lead to over-fixing (unnecessary extra operations), under-fixing (not solving the imbalance properly), and even failures. We propose DISARM, a joint hardware-software methodology (unlike any existing solution) for mitigating runtime side-channel vulnerabilities that utilizes timing values from real embedded devices to generate targeted software fixes. We implement DISARM to support C/C++/Java source codes and validate it across 22 standard benchmarks. DISARM outperforms state-of-the-art solutions such as PENDULUM and DifFuzzAR in terms of execution time overhead (up to −46%), code size overhead (up to −10%), and correctness (no failures) on five different embedded/edge devices.

Suha, Tasneem [University of Maine]↗

Methodology for Building Granular Testing in Multicomponent Scientific Software

Computational science and engineering communities develop complex application software with multiple mathematical models that need to interact with one another. Partly due to complexity of verifying scientific software, and partly because of the way incentives work in science, there has been insufficient testing of these codes. With a spotlight on the results produced with scientific software, and increasing awareness of software testing and verification as a critical contributor to the reliability of these results, testing is gaining more attention by the developing teams. However, many science teams struggle to find a good solution for themselves due either to lack of training or lack of resources within the team. In this experience paper, we describe test development methodologies utilized in two different scenarios: one explains a methodology for building granular tests where none existed before, while the second demonstrates a methodology for selecting test cases that build confidence in the software through a process similar to scaffolding. The common insight from both the experiences is that testing should be a part of software design from the beginning for better software and scientific productivity.

test building, granular testing, Earth system mode↗

Implementation of a High-Fidelity Interface Resolving Method in Nek5000

The development and utilization of computational fluid dynamics (CFD) models for large, high-temperature electric melters in the Waste Treatment and Immobilization Plant (WTP) in eastern Washington State have proven to be valuable for various purposes. These models allow for a better understanding of the physio-chemical processes occurring within the melter vessels and can contribute to improving operational efficiency, throughput, and addressing operational issues related to vitrification. The CFD models employed for these melter vessels incorporate multiphase fluid flow and heat transfer simulations in different regions, including the plenum, cold cap, and molten glass regions. As the tank waste and glass formers are introduced into the melter, a reacting batch layer known as the cold cap forms on top of the molten glass. To enhance the melt rate, forced convection bubblers located at the bottom of the melters generate convection currents that help homogenize the molten glass and provide heat to the cold cap. As the bubbles rise through the highly viscous glass, they adopt a spherical-cap shape [1]. Meanwhile, the conversion of the batch to glass generates significant amounts of gases (such as water vapor, carbon dioxide, sulfur dioxide, and NOx) due to thermal decomposition [2]. These gases become trapped between the cold cap and molten glass, forming a foam layer [3]. For modeling multiphase flow in CFD and heat transfer simulations of waste glass melters at different scales, efforts are underway to augment the capabilities of the Nek5000 [4] and NekRS [5] open-source codes [6]. Nek5000/NekRS is a scalable and efficient spectral element code that has been successfully applied to a wide range of fluid dynamics problems. By leveraging the Nek5000/NekRS software, it becomes possible to model the melter systems more affordably and with lower computational requirements compared to currently utilized commercial CFD software. The specific objectives of this ongoing effort include: 1. Implementation of a level set method in Nek5000/NekRS: The level set method is a numerical technique commonly employed in CFD simulations to track and represent the interface between different phases or materials accurately. By incorporating this method into Nek5000/NekRS, the ability to simulate multiphase flows in waste glass melters at a high level of fidelity can be achieved. 2. Demonstration of capability for air bubbling through molten glass: As part of the development process, a specific case of air bubbling through molten glass will be simulated using the augmented Nek5000/NekRS code. This demonstration aims to showcase the ability of the software to accurately capture and analyze the complex phenomena involved in the multiphase flow within waste glass melters. By achieving these objectives, the improved Nek5000/NekRS code will offer a powerful computational tool for simulating and analyzing waste glass melter systems, enabling better understanding, optimization, and troubleshooting of these vitrification processes. The ability to accurately model and simulate multiphase flows has broad relevance across many industries and scientific domains, and the improved functionality can contribute to advancements in various fields beyond waste glass melter simulations.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DISARM: Target Electronic Device Informed Mitigation of Software Runtime Side-Channel Vulnerabilities

Program runtime/timing attacks exploit variations in a program’s execution times to extract sensitive information from the program (e.g. encryption keys, sensitive variable data, intellectual property). State-of-the-art solutions to runtime side-channel attacks attempt to balance the execution time of the sensitive code for different control flow paths to eliminate the timing leakage. However, during the mitigation process, most techniques do not consider the underlying hardware/device on which the target program is supposed to run on. This can lead to over-fixing (unnecessary extra operations), under-fixing (not solving the imbalance properly), and even failures. Here, we propose DISARM, a joint hardware-software methodology (unlike any existing solution) for mitigating runtime side-channel vulnerabilities that utilizes timing values from real embedded devices to generate targeted software fixes. We implement DISARM to support C/C++/Java source codes and validate it across 22 standard benchmarks. DISARM outperforms state-of-the-art solutions such as PENDULUM and DifFuzzaR in terms of execution time overhead, code size overhead, and correctness on five different embedded/edge devices.

Timing/runtime side-channel↗

Energy Northwest — Advanced Grid Interactive Load Efficiency (AGILE) : A Techno-economic Assessment

The Advanced Grid Interactive Load Efficiency project team, led by Energy Northwest, was awarded funding as part of the fourth round of the Clean Energy Fund program to investigate, co-create, and complete a preliminary design for grid-interactive efficient buildings (GEBs) for a number of schools served by Grays Harbor PUD. The project team has evaluated different combinations of systems at selected school buildings and the potential to respond to grid and customer needs, and develop a preliminary system technical design, including specifying desired GEB technology options, determining communication and electrical interface requirements, assessing control software sensor requirements, and interfacing with building management systems. PNNL led the techno-economic assessment efforts, leveraging its advanced modeling and analytical methods and tools developed for building-to-grid integration. This report documents the economic assessment for different GEB design options, encompassing an in-depth examination of use cases and value propositions, assumptions and inputs, models, methods, case studies, as well as key findings.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Testing contamination source identification methods for water distribution networks

In the event of contamination in a water distribution network (WDN), source identification (SI) methods that analyze sensor data can be used to identify the source location(s). Knowledge of the source location and characteristics are important to inform contamination control and cleanup operations. Various SI strategies that have been developed by researchers differ in their underlying assumptions and solution techniques. The following manuscript presents a systematic procedure for testing and evaluating SI methods. The performance of these SI methods is affected by various factors including the size of WDN model, measurement error, modeling error, time and number of contaminant injections, and time and number of measurements. This paper includes test cases that vary these factors and evaluates three SI methods on the basis of accuracy and specificity. The tests are used to review and compare these different SI methods, highlighting their strengths in handling various identification scenarios. These SI methods and a testing framework that includes the test cases and analysis tools presented in this paper have been integrated into EPA’s Water Security Toolkit (WST), a suite of software tools to help researchers and others in the water industry evaluate and plan various response strategies in case of a contamination incident. Lastly, a set of recommendations are made for users to consider when working with different categories of SI methods.

54 ENVIRONMENTAL SCIENCES↗