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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 775 records · Page 43
All sourcesNASA NTRSDOE OSTI
DOE OSTI2012

CONSTRAINING SOURCE REDSHIFT DISTRIBUTIONS WITH GRAVITATIONAL LENSING

We introduce a new method for constraining the redshift distribution of a set of galaxies, using weak gravitational lensing shear. Instead of using observed shears and redshifts to constrain cosmological parameters, we ask how well the shears around clusters can constrain the redshifts, assuming fixed cosmological parameters. This provides a check on photometric redshifts, independent of source spectral energy distribution properties and therefore free of confounding factors such as misidentification of spectral breaks. We find that {approx}40 massive ({sigma}{sub v} = 1200 km s{sup -1}) cluster lenses are sufficient to determine the fraction of sources in each of six coarse redshift bins to {approx}11%, given weak (20%) priors on the masses of the highest-redshift lenses, tight (5%) priors on the masses of the lowest-redshift lenses, and only modest (20%-50%) priors on calibration and evolution effects. Additional massive lenses drive down uncertainties as N{sub lens}{sup -1/2}, but the improvement slows as one is forced to use lenses further down the mass function. Future large surveys contain enough clusters to reach 1% precision in the bin fractions if the tight lens-mass priors can be maintained for large samples of lenses. In practice this will be difficult to achieve, but the method may be valuable as a complement to other more precise methods because it is based on different physics and therefore has different systematic errors.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2012

A class of effective field theory models of cosmic acceleration

We explore a class of effective field theory models of cosmic acceleration involving a metric and a single scalar field. These models can be obtained by starting with a set of ultralight pseudo-Nambu-Goldstone bosons whose couplings to matter satisfy the weak equivalence principle, assuming that one boson is lighter than all the others, and integrating out the heavier fields. The result is a quintessence model with matter coupling, together with a series of correction terms in the action in a covariant derivative expansion, with specific scalings for the coefficients. After eliminating higher derivative terms and exploiting the field redefinition freedom, we show that the resulting theory contains nine independent free functions of the scalar field when truncated at four derivatives. This is in contrast to the four free functions found in similar theories of single-field inflation, where matter is not present. We discuss several different representations of the theory that can be obtained using the field redefinition freedom. For perturbations to the quintessence field today on subhorizon lengthscales larger than the Compton wavelength of the heavy fields, the theory is weakly coupled and natural in the sense of t'Hooft. The theory admits a regime where the perturbations become modestly nonlinear, but very strong nonlinearities lie outside its domain of validity.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2012

The cosmology of the Fab-Four

We have recently proposed a novel self tuning mechanism to alleviate the famous cosmological constant problem, based on the general scalar tensor theory proposed by Horndeski. The self-tuning model ends up consisting of four geometric terms in the action, with each term containing a free potential function of the scalar field; the four together being labeled as the Fab-Four. In this paper we begin the important task of deriving the cosmology associated with the Fab-Four Lagrangian. Performing a phase plane analysis of the system we are able to obtain a number of fixed points for the system, with some remarkable new solutions emerging from the trade-off between the various potentials. As well as obtaining inflationary solutions we also find conventional radiation/matter-like solutions, but in regimes where the energy density is dominated by a cosmological constant, and where we do not have any explicit forms of radiation or matter. Stability conditions for matter solutions are obtained and we show how it is possible for there to exist an extended period of 'matter domination' opening up the possibility that we can generate cosmological structures, and recover a consistent cosmology even in the presence of a large cosmological constant.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The Arabidopsis WRINKLED1 transcription factor affects auxin homeostasis in roots

WRINKLED1 (WRI1) is a key transcriptional regulator of fatty acid biosynthesis genes in diverse oil-containing tissues. Loss of function of Arabidopsis WRI1 leads to a reduction in the expression of genes for fatty acid biosynthesis and glycolysis, and concomitant strong reduction of seed oil content. The wri1-1 loss-of-function mutant shows reduced primary root growth and decreased acidification of the growth medium. The content of a conjugated form of the plant growth hormone auxin, indole-3-acetic acid (IAA)-Asp, was higher in wri1-1 plants compared with the wild-type. GH3.3, a gene encoding an enzyme involved in auxin degradation, displayed higher expression in the wri1-1 mutant. EMSAs demonstrated that AtWRI1 bound to the promoter of GH3.3. Specific AtWRI1-binding motifs were identified in the promoter of GH3.3. In addition, wri1-1 displayed decreased auxin transport. Expression of some PIN genes, which encode IAA carrier proteins, was reduced in wri1-1 plants as well. Correspondingly, AtWRI1 bound to the promoter regions of some PIN genes. It is well known that auxin exerts its maximum effects at a specific, optimal concentration in roots requiring a finely balanced auxin homeostasis. This process appears to be disrupted when the expression of WRI1 and in turn a subset of its target genes are misregulated, highlighting a role for WRI1 in root auxin homeostasis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Dark Energy Survey Year 3 results: cosmology with moments of weak lensing mass maps – validation on simulations

ABSTRACT We present a simulated cosmology analysis using the second and third moments of the weak lensing mass (convergence) maps. The second moment, or variances, of the convergence as a function of smoothing scale contains information similar to standard shear two-point statistics. The third moment, or the skewness, contains additional non-Gaussian information. The analysis is geared towards the third year (Y3) data from the Dark Energy Survey (DES), but the methodology can be applied to other weak lensing data sets. We present the formalism for obtaining the convergence maps from the measured shear and for obtaining the second and third moments of these maps given partial sky coverage. We estimate the covariance matrix from a large suite of numerical simulations. We test our pipeline through a simulated likelihood analyses varying 5 cosmological parameters and 10 nuisance parameters and identify the scales where systematic or modelling uncertainties are not expected to affect the cosmological analysis. Our simulated likelihood analysis shows that the combination of second and third moments provides a 1.5 per cent constraint on S8 ≡ σ8(Ωm/0.3)0.5 for DES Year 3 data. This is 20 per cent better than an analysis using a simulated DES Y3 shear two-point statistics, owing to the non-Gaussian information captured by the inclusion of higher order statistics. This paper validates our methodology for constraining cosmology with DES Year 3 data, which will be presented in a subsequent paper.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Scaling pair count to next galaxy surveys

ABSTRACT Counting pairs of galaxies or stars according to their distance is at the core of real-space correlation analyses performed in astrophysics and cosmology. Upcoming galaxy surveys (LSST, Euclid) will measure properties of billions of galaxies challenging our ability to perform such counting in a minute-scale time relevant for the usage of simulations. The problem is only limited by efficient access to the data, hence belongs to the big data category. We use the popular Apache Spark framework to address it and design an efficient high-throughput algorithm to deal with hundreds of millions to billions of input data. To optimize it, we revisit the question of non-hierarchical sphere pixelization based on cube symmetries and develop a new one dubbed the ‘Similar Radius Sphere Pixelization’ (SARSPix) with very close to square pixels. It provides the most adapted indexing over the sphere for all distance-related computations. Using LSST-like fast simulations, we compute autocorrelation functions on tomographic bins containing between a hundred million to one billion data points. In each case, we achieve the construction of a standard pair-distance histogram in about 2 min, using a simple algorithm that is shown to scale, over a moderate number of nodes (16–64). This illustrates the potential of this new techniques in the field of astronomy where data access is becoming the main bottleneck. They can be easily adapted to other use-cases as nearest-neighbours search, catalogue cross-match or cluster finding. The software is publicly available from https://github.com/astrolabsoftware/SparkCorr.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å

HhaI, a Type II restriction endonuclease, recognizes the symmetric sequence 5'-GCG↓C-3' in duplex DNA and cleaves (‘↓’) to produce fragments with 2-base, 3'-overhangs. We determined the structure of HhaI in complex with cognate DNA at an ultra-high atomic resolution of 1.0 Å. Most restriction enzymes act as dimers with two catalytic sites, and cleave the two strands of duplex DNA simultaneously, in a single binding event. HhaI, in contrast, acts as a monomer with only one catalytic site, and cleaves the DNA strands sequentially, one after the other. HhaI comprises three domains, each consisting of a mixed five-stranded β sheet with a defined function. The first domain contains the catalytic-site; the second contains residues for sequence recognition; and the third contributes to non-specific DNA binding. The active-site belongs to the ‘PD-D/EXK’ superfamily of nucleases and contains the motif SD-X11-EAK. The first two domains are similar in structure to two other monomeric restriction enzymes, HinP1I (G↓CGC) and MspI (C↓CGG), which produce fragments with 5'-overhangs. The third domain, present only in HhaI, shifts the positions of the recognition residues relative to the catalytic site enabling this enzyme to cleave the recognition sequence at a different position. The structure of M.HhaI, the biological methyltransferase partner of HhaI, was determined earlier. Together, these two structures represent the first natural pair of restriction-modification enzymes to be characterized in atomic detail.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Dark Energy Survey Year 3 results: Cosmology with moments of weak lensing mass maps

We present a cosmological analysis using the second and third moments of the weak lensing mass (convergence) maps from the first three years of data (Y3) data of the Dark Energy Survey. The survey spans an effective area of 4139 square degrees and uses the images of over 100 million galaxies to reconstruct the convergence field. The second moment of the convergence as a function of smoothing scale contains information similar to standard shear 2-point statistics. The third moment, or the skewness, contains additional non-Gaussian information. The data is analyzed in the context of the Λ CDM model, varying five cosmological parameters and 19 nuisance parameters modeling astrophysical and measurement systematics. Our modeling of the observables is completely analytical, and has been tested with simulations in our previous methodology study. We obtain a 1.7% measurement of the amplitude of fluctuations parameter S 8 ≡ σ 8 ( Ω m / 0.3 ) 0.5 = 0.784 ± 0.013 . The measurements are shown to be internally consistent across redshift bins, angular scales, and between second and third moments. In particular, the measured third moment is consistent with the expectation of gravitational clustering under the Λ CDM model. The addition of the third moment improves the constraints on S 8 and Ω m by ∼ 15 % and ∼ 25 % compared to an analysis that only uses second moments. We compare our results with Planck constraints from the cosmic microwave background, finding a 2.2 – 2.8 σ tension in the full parameter space, depending on the combination of moments considered. The third moment, independently, is in 2.8 σ tension with Planck, and thus provides a cross-check on the analyses of 2-point correlations.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

FEgen (v.1): Field Emission Distribution Generator Freeware Based on Fowler–Nordheim Equation

This work presents an open-source code, FEgen, that generates initial field emission distributions based on the time-dependent Fowler–Nordheim equation. Current in-demand and open-source beam tracking software—such as ASTRA, IMPACT-T, and GPT—do not contain native distribution generator functions suitable for field emitted electron tracking and phase space analysis. Furthermore, the intuitive graphical user interface of FEgen generates input files shown to be fully compatible with both ASTRA and GPT. Here, detailed application examples demonstrating a subset of FEgen’s capabilities are given by creating a customized emitter pattern with application to transverse beam shaping and longitudinal beam dynamic experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2016

Activity-Based Protein Profiling of Ammonia Monooxygenase in Nitrosomonas europaea

Nitrosomonas europaea is an aerobic nitrifying bacterium that oxidizes ammonia (NH 3 ) to nitrite (NO 2 ₋ ) through the sequential activities of ammonia monooxygenase (AMO) and hydroxylamine dehydrogenase (HAO). Many alkynes are mechanism-based inactivators of AMO, and here we describe an activity-based protein profiling method for this enzyme using 1,7-octadiyne (17OD) as a probe. Inactivation of NH 4 + -dependent O 2 uptake by N. europaea by 17OD was time- and concentration-dependent. The effects of 17OD were specific for ammonia-oxidizing activity, and de novo protein synthesis was required to reestablish this activity after cells were exposed to 17OD. Cells were reacted with Alexa Fluor 647 azide using a copper-catalyzed azide-alkyne cycloaddition (CuAAC) (click) reaction, solubilized, and analyzed by SDS-PAGE and infrared (IR) scanning. A fluorescent 28-kDa polypeptide was observed for cells previously exposed to 17OD but not for cells treated with either allylthiourea or acetylene prior to exposure to 17OD or for cells not previously exposed to 17OD. The fluorescent polypeptide was membrane associated and aggregated when heated with β-mercaptoethanol and SDS. The fluorescent polypeptide was also detected in cells pretreated with other diynes, but not in cells pretreated with structural homologs containing a single ethynyl functional group. The membrane fraction from 17OD-treated cells was conjugated with biotin-azide and solubilized in SDS. Streptavidin affinity-purified polypeptides were on-bead trypsin-digested, and amino acid sequences of the peptide fragments were determined by liquid chromatography-mass spectrometry (LC-MS) analysis. Peptide fragments from AmoA were the predominant peptides detected in 17OD-treated samples. In-gel digestion and matrix-assisted laser desorption ionization–tandem time of flight (MALDI-TOF/TOF) analyses also confirmed that the fluorescent 28-kDa polypeptide was AmoA.

Environmental Molecular Sciences Laboratory↗
DOE OSTI2017

Modeling of the structure of ribosomal protein L1 from the archaeon Haloarcula marismortui

The halophilic archaeon Haloarcula marismortui proliferates in the Dead Sea at extremely high salt concentrations (higher than 3 M). This is the only archaeon, for which the crystal structure of the ribosomal 50S subunit was determined. However, the structure of the functionally important side protuberance containing the abnormally negatively charged protein L1 (HmaL1) was not visualized. Attempts to crystallize HmaL1 in the isolated state or as its complex with RNA using normal salt concentrations (≤500 mM) failed. A theoretical model of HmaL1 was built based on the structural data for homologs of the protein L1 from other organisms, and this model was refined by molecular dynamics methods. Analysis of this model showed that the protein HmaL1 can undergo aggregation due to the presence of a cluster of positive charges unique for proteins L1. This cluster is located at the RNA–protein interface, which interferes with the crystallization of HmaL1 and the binding of the latter to RNA.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2020

The vecro hypothesis

We consider three fundamental issues in quantum gravity: (a) the black hole information paradox (b) the unboundedness of entropy that can be stored inside a black hole horizon (c) the relation between the black hole horizon and the cosmological horizon. With help from the small corrections theorem, we convert each of these issues into a sharp conflict. We then argue that all three conflicts can be resolved by the following hypothesis: the vacuum wave functional of quantum gravity contains a “vecro” component made of virtual fluctuations of configurations of the same type that arise in the fuzzball structure of black hole microstates. Further, if we assume that causality holds to leading order in gently curved spacetime, then we must have such a vecro component in order to resolve the above conflicts. The term vecro stands for “Virtual Extended Compression-Resistant Object”, and characterizes the nature of the vacuum fluctuations that resolve the puzzles. It is interesting that puzzle (c) may relate the role of quantum gravity in black holes to observations in the sky.

Astronomy & Astrophysics↗
DOE OSTI2018

Simulation Utility Library for HPC codes

SimUtil contains various small utility functions used in multiple HPC simulation codes here at LLNL, such as: simulation parameter input parsing, parallel file-IO, memory allocation, unit parsing, and helper functions for using MPI.

Fattebert, Jean-Luc↗
DOE OSTI2025

building-physics/refrigeration-system

The existing refrigeration system for OpenStudio was originally designed for a prototype supermarket model. To support the development of new modular space types, it is crucial to refactor the system. This process includes refining the design by utilizing the manufacturer's existing data, along with incorporating the latest data from manufacturers, to enhance the system’s adaptability and functionality. This repository currently contains the refrigeration system database and Python-based automation for generating OpenStudio-compatible refrigeration JSON files.

Bae, Yeonjin [Oak Ridge National Laboratory (ORNL)↗
DOE OSTI2019

FATES Parameters and Output for Parameter Sensitivity at the Panama Barro Colorado Island Testbed

This data package contains a set of Functionally Assembled Terrestrial Ecosystem Simulator (FATES) history files and parameter values for the set of model simulations used in Koven et al. Manuscript "Benchmarking and Parameter Sensitivity of Physiological and Vegetation Dynamics using the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) at Barro Colorado Island, Panama." It includes several ensembles of FATES runs, where each ensemble is comprised of a set of 576 runs that have different values of PFT traits. The ensembles include 1 PFT, 2 PFT, 3 PFT, and 10 PFT simulations. Different ensembles also have different values of disturbance and height sorting parameters, and structural differences including running FATES within different LSMs.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2014

Cryptographic Key Management and Critical Risk Assessment

The Department of Energy Office of Electricity Delivery and Energy Reliability (DOE-OE) CyberSecurity for Energy Delivery Systems (CSEDS) industry led program (DE-FOA-0000359) entitled "Innovation for Increasing CyberSecurity for Energy Delivery Systems (12CSEDS)," awarded a contract to Sypris Electronics LLC to develop a Cryptographic Key Management System for the smart grid (Scalable Key Management Solutions for Critical Infrastructure Protection). Oak Ridge National Laboratory (ORNL) and Sypris Electronics, LLC as a result of that award entered into a CRADA (NFE-11-03562) between ORNL and Sypris Electronics, LLC. ORNL provided its Cyber Security Econometrics System (CSES) as a tool to be modified and used as a metric to address risks and vulnerabilities in the management of cryptographic keys within the Advanced Metering Infrastructure (AMI) domain of the electric sector. ORNL concentrated our analysis on the AMI domain of which the National Electric Sector Cyber security Organization Resource (NESCOR) Working Group 1 (WG1) has documented 29 failure scenarios. The computational infrastructure of this metric involves system stakeholders, security requirements, system components and security threats. To compute this metric, we estimated the stakes that each stakeholder associates with each security requirement, as well as stochastic matrices that represent the probability of a threat to cause a component failure and the probability of a component failure to cause a security requirement violation. We applied this model to estimate the security of the AMI, by leveraging the recently established National Institute of Standards and Technology Interagency Report (NISTIR) 7628 guidelines for smart grid security and the International Electrotechnical Commission (IEC) 63351, Part 9 to identify the life cycle for cryptographic key management, resulting in a vector that assigned to each stakeholder an estimate of their average loss in terms of dollars per day of system operation. To further address probabilities of threats, information security analysis can be performed using game theory implemented in dynamic Agent Based Game Theoretic (ABGT) simulations. Such simulations can be verified with the results from game theory analysis and further used to explore larger scale, real world scenarios involving multiple attackers, defenders, and information assets. The strategy for the game was developed by analyzing five electric sector representative failure scenarios contained in the AMI functional domain from NESCOR WG1. From these five selected scenarios, we characterized them into three specific threat categories affecting confidentiality, integrity and availability (CIA). The analysis using our ABGT simulation demonstrated how to model the AMI functional domain using a set of rationalized game theoretic rules decomposed from the failure scenarios in terms of how those scenarios might impact the AMI network with respect to CIA.

Advanced Metering Infrastructure↗
DOE OSTI2014

Centralized Cryptographic Key Management and Critical Risk Assessment - (CRADA Final Report)

The Department of Energy Office of Electricity Delivery and Energy Reliability (DOE-OE) Cyber Security for Energy Delivery Systems (CSEDS) industry led program (DE-FOA-0000359) entitled "Innovation for Increasing Cyber Security for Energy Delivery Systems (12CSEDS)," awarded a contract to Sypris Electronics LLC to develop a Cryptographic Key Management System for the smart grid (Scalable Key Management Solutions for Critical Infrastructure Protection). Oak Ridge National Laboratory (ORNL) and Sypris Electronics, LLC as a result of that award entered into a CRADA (NFE-11-03562) between ORNL and Sypris Electronics, LLC. ORNL provided its Cyber Security Econometrics System (CSES) as a tool to be modified and used as a metric to address risks and vulnerabilities in the management of cryptographic keys within the Advanced Metering Infrastructure (AMI) domain of the electric sector. ORNL concentrated our analysis on the AMI domain of which the National Electric Sector Cyber security Organization Resource (NESCOR) Working Group 1 (WG1) has documented 29 failure scenarios. The computational infrastructure of this metric involves system stakeholders, security requirements, system components and security threats. To compute this metric, we estimated the stakes that each stakeholder associates with each security requirement, as well as stochastic matrices that represent the probability of a threat to cause a component failure and the probability of a component failure to cause a security requirement violation. We applied this model to estimate the security of the AMI, by leveraging the recently established National Institute of Standards and Technology Interagency Report (NISTIR) 7628 guidelines for smart grid security and the International Electrotechnical Commission (IEC) 63351, Part 9 to identify the life cycle for cryptographic key management, resulting in a vector that assigned to each stakeholder an estimate of their average loss in terms of dollars per day of system operation. To further address probabilities of threats, information security analysis can be performed using game theory implemented in dynamic Agent Based Game Theoretic (ABGT) simulations. Such simulations can be verified with the results from game theory analysis and further used to explore larger scale, real world scenarios involving multiple attackers, defenders, and information assets. The strategy for the game was developed by analyzing five electric sector representative failure scenarios contained in the AMI functional domain from NESCOR WG1. From these five selected scenarios, we characterized them into three specific threat categories affecting confidentiality, integrity and availability (CIA). The analysis using our ABGT simulation demonstrated how to model the AMI functional domain using a set of rationalized game theoretic rules decomposed from the failure scenarios in terms of how those scenarios might impact the AMI network with respect to CIA.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2014

A New Perspective for the Calibration of Computational Predictor Models.

This paper presents a framework for calibrating computational models using data from sev- eral and possibly dissimilar validation experiments. The offset between model predictions and observations, which might be caused by measurement noise, model-form uncertainty, and numerical error, drives the process by which uncertainty in the models parameters is characterized. The resulting description of uncertainty along with the computational model constitute a predictor model. Two types of predictor models are studied: Interval Predictor Models (IPMs) and Random Predictor Models (RPMs). IPMs use sets to characterize uncer- tainty, whereas RPMs use random vectors. The propagation of a set through a model makes the response an interval valued function of the state, whereas the propagation of a random vector yields a random process. Optimization-based strategies for calculating both types of predictor models are proposed. Whereas the formulations used to calculate IPMs target solutions leading to the interval value function of minimal spread containing all observations, those for RPMs seek to maximize the models' ability to reproduce the distribution of obser- vations. Regarding RPMs, we choose a structure for the random vector (i.e., the assignment of probability to points in the parameter space) solely dependent on the prediction error. As such, the probabilistic description of uncertainty is not a subjective assignment of belief, nor is it expected to asymptotically converge to a fixed value, but instead it is a description of the model's ability to reproduce the experimental data. This framework enables evaluating the spread and distribution of the predicted response of target applications depending on the same parameters beyond the validation domain (i.e., roll-up and extrapolation).

Crespo, Luis Guillermo↗