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NASA NTRS2018

(GO)2-SIM: a GCM-Oriented Ground-Observation Forward-Simulator Framework for Objective Evaluation of Cloud and Precipitation Phase

General circulation model (GCM) evaluation using ground-based observations is complicated by inconsistencies in hydrometeor and phase definitions. Here we describe (GO)2-SIM, a forward simulator designed for objective hydrometeor-phase evaluation, and assess its performance over the North Slope of Alaska using a 1-year GCM simulation. For uncertainty assessment, 18 empirical relationships are used to convert model grid-average hydrometeor (liquid and ice, cloud, and precipitation) water contents to zenith polarimetric micropulse lidar and Ka-band Doppler radar measurements, producing an ensemble of 576 forward-simulation realizations. Sensor limitations are represented in forward space to objectively remove from consideration model grid cells with undetectable hydrometeor mixing ratios, some of which may correspond to numerical noise.Phase classification in forward space is complicated by the inability of sensors to measure ice and liquid signals distinctly. However, signatures exist in lidar–radar space such that thresholds on observables can be objectively estimated and related to hydrometeor phase. The proposed phase-classification technique leads to misclassification in fewer than 8% of hydrometeor-containing grid cells. Such misclassifications arise because, while the radar is capable of detecting mixed-phase conditions, it can mistake water- for ice-dominated layers. However, applying the same classification algorithm to forward-simulated and observed fields should generate hydrometeor-phase statistics with similar uncertainty. Alternatively, choosing to disregard how sensors define hydrometeor phase leads to frequency of occurrence discrepancies of up to 40%. So, while hydrometeor-phase maps determined in forward space are very different from model "reality" they capture the information sensors can provide and thereby enable objective model evaluation.

Lamer, K.↗
NASA NTRS2016

Evaluating Summer-Time Ozone Enhancement Events in the Southeast United States

This study evaluates source attribution of ozone (O3) in the southeast US within O3 lamina observed by the University of Alabama in Huntsville (UAH) Tropospheric Ozone Lidar Network (TOLNet) system during June 2013. This research applies surface-level and airborne in situ data and chemical transport model, GEOS-Chem, simulations in order to quantify the impact of North American anthropogenic emissions, wildfires, lightning NOx, and background stratospheric transport on the observed O3 lamina. During the summer of 2013, two anomalous O3 layers were observed and evaluated: 1) a nocturnal near-surface enhancement and 2) a late evening elevated (3-6 km above ground level) O3 plume. A "brute force" zeroing method was applied in GEOS-Chem to quantify the impact of individual emission sources and transport pathways on the vertical distribution of O3 during the two observed lamina. These model simulations suggest that the nocturnal O3 enhancement on June 12, 2013 below 3 km was primarily due to wildfire emissions and the fact that daily maximum anthropogenic emission contributions occurred during these night-time hours. During the second case study it was predicted that above average contributions from background stratospheric transport was largely contributing to the O3 lamina observed on June 29, 2013 between 3-6 km. Further evaluation suggested that a stratospheric intrusion was likely the main source contributing to this O3 enhancement between 3-6 km. Supporting information from other models, remote-sensing observations, and ground-based airborne in situ data agree with the source attribution predicted by GEOS-Chem simulations for both case studies. Overall, this study demonstrates the dynamic atmospheric chemistry occurring in the southeast US and displays the various emission sources and transport processes impacting O3 enhancements at different vertical levels of the troposphere.

Laminates↗
NASA NTRS2018

Evaluation of X-Ray Reflectors by Optical Diffraction Patterns

Performance of X-ray reflectors affects that of X-ray mirrors. Modern X-ray mirrors have thousands of reflectors to gain large effective area. Evaluation of the reflectors is an important process in production of the mirrors. A diffraction pattern dominates reflector image when the parallel optical beam illuminates the reflector along its optical axis because the reflectors are used at grazing incident angles of around 1 deg and their effective width are 1–10 mm. A diffraction pattern from the entire reflector surface can be acquired at once with the aid of a lens. The diffraction pattern holds information of the surface profiles of the reflectors. To quantitatively evaluate the reflectors with the diffraction pattern, we created a diffraction pattern model by the wave optics with the ideal surface profile and fitted it to data. As a result, a correlation between fitting residual and the normal vector distribution of the surface profile was found. With our method, the reflectors can be evaluated and sorted out more efficiently.

Hayashi, Takayuki↗
NASA NTRS2019

Evaluation of Full Reynolds Stress Turbulence Models in FUN3D for Axisymmetric Jet Flow

Two full seven-equation turbulence models available in the FUN3D code are evaluated for their ability to improve the computation of challenging mixing flows encountered in aerospace propulsion. These models are the SSG/LRR and Wilcox full second-moment Reynolds stress models. They solve equations for the six components of the Reynolds stress and a seventh equation for the turbulent length scale. Two standard eddy viscosity models are also evaluated for comparison, the Spalart-Allmaras (SA) one-equation model and the Menter Shear Stress Transport (SST-V) two-equation turbulence model. Flow through an axisymmetric reference nozzle is examined at three flow conditions: subsonic unheated, subsonic heated, and near sonic unheated. Centerline profiles of velocity and turbulent kinetic energy and radial profiles of velocity, turbulent kinetic energy and turbulent stresses are examined. Results showed that the SA model did well at predicting the jet potential core length, but over-mixed the downstream flow, whereas the SST-V model over-predicted the potential core length. The Wilcox-model significantly over-predicted the potential core length and under-predicted the mixing and was not well-suited for the jet flows evaluated, however the SSG/LRR Reynolds stress model did well at predicting the mixing rate and mean velocity for all cases examined.

mixing layers↗
NASA NTRS2019

Scaling Evaluation of Ice-Crystal Icing on a Modern Turbofan Engine in PSL Using the COMDES-MELT Code

This paper presents preliminary ice-crystal icing (ICI) altitude scaling evaluation results of a Honeywell Uncertified Research Engine (HURE) that was tested in the NASA Glenn Research Center Propulsion Systems Laboratory (PSL) during January of 2018. This engine geometry features a hidden core design to keep the core less exposed. The engine was fitted with internal video cameras to observe various ice buildup processes at multiple selected locations within the engine core flow path covering the fan stator, the splitter-lip/shroud/strut, and the high pressure compressor (HPC) variable inlet guide vane (IGV) regions. The potential ice accretion risk was pre-determined to occur by using NASA’s in-house 1D Engine Icing Risk assessment code, COMDES-MELT. The code was successful in predicting the risk of ice accretion in adiabatic regions like the fan-stator of the HURE at specific engine operating points. However at several operating points during the test, liquid water was observed running along the shroud toward the variable IGV of the HPC regions with an air temperature well below freezing, thus no particle melting could have occurred due to heating from the air alone. It was reasoned that other sources of heat were present in that region. To account for these heat sources the inlet total temperature was adjusted to give a wet bulb temperature of 24 F below the standard minimum wet bulb temperature of 492 R to allow ice to accrete in the splitter-lip/shroud/strut region, which was determined from a reference case where hard ice was observed in that region. With that adjustment the COMDES-MELT code was successful in providing operating points where there was a risk of ice accretion during the test campaign. In addition to calculating possible conditions at different selected lower altitudes, simulations were run to determine potential inlet conditions that could lead to ice-crystal accretion along the prescribed stations where the cameras were available. From there, scaled test conditions were determined by best matching the following three icing related parameters of the reference condition: (1) the local air total wet bulb temperature, (2) the local ice crystal cloud melt ratio and (3) the engine fan face ice/water to air mass flux ratio of the ice crystal cloud. Instantaneous images taken from the time-lapsed movies of ice buildup were used along with the relevant thermodynamic data of air, water vapor and local icing condition to help evaluate how closely the proposed altitude scaling method could be used in ground based test facility to duplicate selected reference ICI features observed at specific location inside this engine at different scale altitudes. Discussions on observed limitation for engine icing scaling application from this test campaign and needed improvement are provided. A scaling test procedure to help identify potential ICI risk conditions and possible ice accretion locations of a new turbofan engine is evaluated in PSL.

Engine Testing in PSL↗
NASA NTRS2019

Evaluating Biosignatures for Life Detection

The goal here is to develop a conceptual framework for evaluating the ability of different biosignatures to provide evidence for the presence of life in planned missions or observational studies. The focus is on intrinsic characteristics of biosignatures in a given space environment rather than on their detection, which depends on the current state of technology. Suitable evaluation procedures are based on an extensive body of previous work on related problems in which different options are evaluated to make decisions in business, engineering, medical fields and social or political arena. In these cases, three approaches have proven to be particularly useful. Two of them, signal detection theory (SDT) and Bayesian hypothesis testing are based on probabilities. The third approach, multi-attribute utility (MAU) is based on utility theory.

Pohorille, Andrew↗
NASA NTRS2019

Evaluation of Impact Energy Attenuators and Composite Material Designs of a UAM VTOL Concept Vehicle

The development of Vertical Take-off and Landing (VTOL) vehicles for the Urban Air Mobility (UAM) markets presents a need for light weight vehicle structures with effective occupant protection capabilities. The National Aeronautics and Space Administration (NASA) has been working to fill that need, recently developing a cadre of concept vehicles to help characterize UAM design feasibility. This paper describes a study, using these concept vehicles, to evaluate the use of advanced composite structure and energy attenuating designs in the UAM vehicle design space. A finite element model (FEM) of a single passenger quadrotor concept vehicle was developed in LS-Dyna® and simulated under nominal and off-nominal vertical impact conditions. A variety of energy attenuating design mechanisms were implemented within this model to quantify their effectiveness in improving occupant safety. The use of carbon composites in both the energy attenuation mechanisms and vehicle structure was evaluated. The results of this study found significant reduction in occupant injury risk with the implementation of energy absorbing composite crush tubes and landing gear within the vehicle design. Additionally the use of a carbon fiber as a structural material was found to provide significant weight reduction while maintaining similar occupant loads to that predicted with an aluminum structure. This work provides a preliminary evaluation of design mechanisms and materials that may be used to optimize occupant protection capabilities within the UAM market.

Putnam, Jacob↗
NASA NTRS2019

Increasing Pilot’s Understanding of Future Automation State – an Evaluation of an Automation State and Trajectory Prediction System

A pilot in the loop flight simulation study was conducted at NASA Langley Research Center to evaluate a trajectory prediction system. The trajectory prediction system computes a five-minute prediction of the lateral and vertical path of the aircraft given the current and intent state of the automation. The prediction is shown as a graphical representation so the pilots can form an accurate mental model of the future state. Otherwise, many automation changes and triggers are hidden from the flight crew or need to be consolidated to understand if a change will occur and the exact timing of the change. Varying dynamic conditions like deceleration can obscure the future trajectory and the ability to meet constraints, especially in the vertical dimension. Current flight deck indications of flight path assume constant conditions and do not adequately support the flight crew to make correct judgments regarding constraints. The study was conducted using ten commercial airline crews from multiple airlines, paired by airline to minimize procedural effects. Scenarios spanned a range of conditions that provided evaluation in a realistic environment with complex traffic and weather conditions. In particular, scenarios probed automation state and loss of state awareness. The technology was evaluated and contrasted with current state-of-the-art flight deck capabilities modeled from the Boeing 787. Objective and subjective data were collected from aircraft parameters, questionnaires, audio/video recordings, head/eye tracking data, and observations. This paper details findings about the trajectory prediction system including recommendations about further study.

Etherington, Timothy J.↗
NASA NTRS2020

Evaluation of Low Cost, User-Centered Alerting Devices for the Mitigation of Flight Crew Spatial Disorientation

The National Aeronautics and Space Administration (NASA) is conducting research into technologies which have the potential to reduce flight crew Spatial Disorientation (SD). While flight deck technology has advanced rapidly over the past fifty (50) years, the reported occurrences of flight crew SD have not decreased. The Cost-Effective Devices for Alerting Research (CEDAR) effort has focused on the identification and development of low cost, user-centered alerting solutions for the purpose of mitigating the occurrence of flight crew SD. This effort seeks to evaluate both existing technologies as well as new and emerging technologies which have a viable path to implementation in commercial aviation within the next five (5) years. This research is intended to develop a proof-of-concept for real-time SD mitigation which could eventually be utilized to improve safety in future air transport operations. NASA has partnered with the United States Naval Aeromedical Research Unit in Dayton, OH (NAMRU-D) to conduct flight crew SD research utilizing their Disorientation Research Device (DRD), dubbed “The Kraken”. This high-tech simulator features never-before-seen capabilities for side-by-side commercial aviation flight crew SD research, and is capable of re-creating the forces necessary to induce SD illusions in a safe and repeatable manner. Prototype SD mitigation solutions were incorporated into this simulator for scenario-based testing and evaluation using airline pilots within a contextually representative operational environment. SD mitigation technology prototypes designed to provide haptic feedback for both alerting and guidance, as well as innovative visual and aural alerting displays were evaluated. In December 2014, as a result of analyzing eighteen (18) loss-of-control events, the Commercial Aviation Safety Team (CAST) recommended research into flight deck technologies that have potential to mitigate the problems and contributing factors that lead to flight crew loss of airplane state awareness (ASA) and conditions likely to produce SD. The aviation community (government, industry and academia) have been charged with conducting research into cost-effective, user-centered flight deck alerting systems to alert flight crews; especially for the two conditions that produced SD (sub-threshold rolls and the somatogravic illusion). Somatogravic illusions are defined as illusions in which “there is a false perception of attitude on exposure to a force vector that differs in direction and/or magnitude from the normal gravitational force”. The sub-threshold roll illusion (aka the “leans” illusion) is a false sensation of roll attitude. A prolonged roll of less than two degrees becomes physiologically imperceptible to the pilot, and can lead to an incorrect perception of aircraft orientation. The sub-threshold roll illusion forms the entry point for the “graveyard spiral”, a maneuver in which the pilot’s corrective action (based on their false perception of aircraft orientation) causes the aircraft to spiral down into the ground. In both of these SD illusions, it is when the pilot attempts to correct the aircraft’s attitude (based on a false perception of its state) that problems arise, sometimes with lethal consequences.

Ronald J Daiker↗
NASA NTRS2020

Evaluation of long-term Northern Hemisphere snow water equivalent products

Nine gridded Northern Hemisphere snow water equivalent (SWE) products were evaluated as part of the European Space Agency (ESA) Satellite Snow Product Intercomparison and Evaluation Exercise (SnowPEx). Three categories of datasets were assessed: (1) those utilizing some form of reanalysis (the NASA Global Land Data Assimilation System version 2 – GLDAS-2; the European Centre for Medium-Range Weather Forecasts (ECMWF) interim land surface reanalysis – ERA-Interim/Land and ERA5; the NASA Modern-Era Retrospective Analysis for Research and Applications version 1 (MERRA) and version 2 (MERRA-2); the Crocus snow model driven by ERA-Interim meteorology – Crocus); (2) passive microwave remote sensing combined with daily surface snow depth observations (ESA GlobSnow v2.0); and (3) stand-alone passive microwave retrievals (NASA AMSR-E SWE versions 1.0 and 2.0) which do not utilize surface snow observations. Evaluation included validation against independent snow course measurements from Russia, Finland, and Canada and product intercomparison through the calculation of spatial and temporal correlations in SWE anomalies. The stand-alone passive microwave SWE products (AMSR-E v1.0 and v2.0 SWE) exhibit low spatial and temporal correlations to other products and RMSE nearly double the best performing product. Constraining passive microwave retrievals with surface observations (GlobSnow) provides performance comparable to the reanalysis-based products; RMSE over Finland and Russia for all but the AMSR-E products is ∼50 mm or less, with the exception of ERA-Interim/Land over Russia. Using a seven-dataset ensemble that excluded the stand-alone passive microwave products reduced the RMSE by 10 mm (20 %) and increased the correlation from 0.67 to 0.78 compared to any individual product. The overall performance of the best multiproduct combinations is still at the margins of acceptable uncertainty for scientific and operational requirements; only through combined and integrated improvements in remote sensing, modeling, and observations will real progress in SWE product development be achieved.

Northern Hemisphere snow water equivalent (SWE) pr↗
NASA NTRSDate not supplied

Evaluating Retrieval Algorithm Climate Stability: Estimating 3D Optical Thickness Bias Distributions by Cloud Type

Detecting climate trends on large spatiotemporal scales requires accurate, stable measurements and stable retrieval algorithms. We strive to estimate how time-variant retrieval algorithm biases may impact trend detection. Here we focus on the 3D cloud optical thickness (τc) bias, which is among the largest in passive cloud retrieval algorithms. If this bias is time dependent, a possibility with potential decadal changes in cloud morphology, it may obscure genuine trends in τc. Although previous studies have evaluated the cloud- and sun-view geometry-dependent 3D τc bias on small spatial scales, before our current study none have evaluated the stability of this well-known bias on climate-relevant large spatiotemporal scales. These studies must estimate large scale distributions of the 3D τc bias by cloud type and estimate how cloud type amount may change between two climate states. We employ a novel approach to estimate large scale distributions of 3D τc using a proxy of the bias that quantifies the departure of clouds from satisfying the 1D radiative transfer assumption used in passive τc retrievals. This existing globally-distributed proxy is an angular consistency metric that was developed using fused Moderate-Resolution Imaging Spectroradiometer (MODIS) and Multi-angle Imaging Spectroradiometer (MISR) measurements. Calculating the 3D τc bias and the proxy, for known cloud fields enables us to establish statistical relationships between these two quantities, which can be used to calculate large-scale distributions of the 3D τc bias. This approach limits the number of 3D radiative transfer simulations required to only those needed to estimate a statistical relationship between the 3D τc bias for known cloud fields and a proxy of the bias. It is likely that future studies will be needed to evaluate retrieval algorithm bias stability for other geophysical variables as the community develops climate data records from satellite observations and their retrievals. This must be done in addition to monitoring and correcting measurement errors and uncertainties and understanding their impact on retrieved essential climate variables.

Yolanda Shea↗
NASA NTRSDate not supplied

Evaluation of Correction Methods for NASA GeneLab Transcriptomic Datasets

Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets such as sex or age of the model organism used. In the present study, NASA GeneLab-hosted RNAseq datasets from rodent liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC, to determine statistical differences between datasets before and after correction, Principal Component Analysis, to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. The results showed that the reference-based approach introduced several additional (and likely artificial) DEGs when compared with the standard approach. Thus, the most robust standard correction will be implemented in the GeneLab Visualization 2.0 platform when datasets are combined.

GeneLab, RNA-seq, Batch Correction↗
NASA NTRS2020

Large-scale features and evaluation of the PMIP4-CMIP6 midHolocene simulations

The mid-Holocene (6000 years ago) is a standard time period for the evaluation of the simulated response of global climate models using palaeoclimate reconstructions. The latest mid-Holocene simulations are a palaeoclimate entry card for the Palaeoclimate Model Intercomparison Project (PMIP4) component of the current phase of the Coupled Model Intercomparison Project (CMIP6) – hereafter referred to as PMIP4-CMIP6. Here we provide an initial analysis and evaluation of the results of the experiment for the mid-Holocene. We show that state-of-the-art models produce climate changes that are broadly consistent with theory and observations, including increased summer warming of the Northern Hemisphere and associated shifts in tropical rainfall. Many features of the PMIP4-CMIP6 simulations were present in the previous generation (PMIP3-CMIP5) of simulations. The PMIP4-CMIP6 ensemble for the mid-Holocene has a global mean temperature change of −0.3 K, which is −0.2 K cooler than the PMIP3-CMIP5 simulations predominantly as a result of the prescription of realistic greenhouse gas concentrations in PMIP4-CMIP6. Biases in the magnitude and the sign of regional responses identified in PMIP3-CMIP5, such as the amplification of the northern African monsoon, precipitation changes over Europe, and simulated aridity in mid-Eurasia, are still present in the PMIP4-CMIP6 simulations. Despite these issues, PMIP4-CMIP6 and the mid-Holocene provide an opportunity both for quantitative evaluation and derivation of emergent constraints on the hydrological cycle, feedback strength, and potentially climate sensitivity.

mid-Holocene simulations↗
NASA NTRSDate not supplied

Evaluation of Correction Methods for NASA GeneLab Transcriptomic Datasets

Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets. In the present study, NASA GeneLab-hosted RNAseq datasets from mouse liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC to determine statistical differences between datasets before and after correction, Principal Component Analysis to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. The results showed that the reference-based approach introduced several additional (and likely artificial) DEGs when compared with the respective standard approach. Of the methods tested, standard ComBat and DESeq2 were identified as the most robust correction methods for combining spaceflight mouse liver RNAseq datasets hosted on GeneLab.

GeneLab↗
NASA NTRS2021

Groundwater Recharge Estimated by Land Surface Models: An Evaluation in the Conterminous U.S.

Estimating diffuse recharge of precipitation is fundamental to assessing groundwater sustainability. Diffuse recharge is also the process through which climate and climate change directly affect groundwater. In this study, we evaluated diffuse recharge over the conterminous U.S. simulated by a suite of land surface models (LSMs) that were forced using a common set of meteorological input data. Simulated annual recharge exhibited spatial patterns that were similar among the LSMs, with the highest values in the eastern U.S. and Pacific Northwest. However, the magnitudes of annual recharge varied significantly among the models and were associated with differences in simulated ET, runoff and snow. Evaluation against two independent datasets did not answer the question of whether the ensemble mean performs the best, due to inconsistency between those datasets. The amplitude and timing of seasonal maximum recharge differed among the models, influenced strongly by model physics governing deep soil moisture drainage rates and, in cold regions, snowmelt. Evaluation using in situ soil moisture observations suggested that true recharge peaks 1-3 months later than simulated recharge, indicating systematic biases in simulating deep soil moisture. However, recharge from lateral flows and through preferential flows cannot be inferred from soil moisture data, and the seasonal cycle of simulated groundwater storage actually compared well with in situ groundwater observations. Long-term trends in recharge were not consistently correlated with either precipitation trends or temperature trends. This study highlights the need to employ dynamic flow models in LSMs, among other improvements, to enable more accurate simulation of recharge.

snowmelt↗
NASA NTRSDate not supplied

Combining RNA-SEQ Datasets from NASA GENELAB: An Evaluation of Correction Methods

Background: Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets. Methods: In the present study, NASA GeneLab-hosted RNAseq datasets from mouse liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, the median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC to determine statistical differences between datasets before and after correction, Principal Component Analysis to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. Results: The results showed that the reference-based approach introduced several additional (and likely artificial) differentially expressed genes when compared with the respective standard approach. Conclusions: Of the methods tested, standard ComBat_seq and DESeq2 were identified as the most robust correction methods for combining spaceflight mouse liver RNAseq datasets hosted on GeneLab.

Finsam Samson↗
NASA NTRS2006

Chemical kinetics and photochemical data for use in Atmospheric Studies Evaluation Number 15

This is the fifteenth in a series of evaluated sets of rate constants and photochemical cross sections compiled by the NASA Panel for Data Evaluation. The data are used primarily to model stratospheric and upper tropospheric processes, with particular emphasis on the ozone layer and its possible perturbation by anthropogenic and natural phenomena. Copies of this evaluation are available in electronic form and may be printed from the following Internet URL: http://jpldataeval.jpl.nasa.gov/

Orkin, V. L.↗
NASA NTRS2020

Evaluation of the MODIS Collection 6 Multilayer Cloud Detection Algorithm Through Comparisons with Cloudsat Cloud Profiling Radar and CALIPSO CALIOP Products

Since multilayer cloud scenes are common in the atmosphere and can be an important source of uncertainty in passive satellite sensor cloud retrievals, the MODIS MOD06 and MYD06 standard cloud optical property products include a multilayer cloud detection algorithm to assist with data quality assessment. This paper presents an evaluation of the Aqua MODIS MYD06 Collection 6 multilayer cloud detection algorithm through comparisons with active Cloud Profiling Radar (CPR) and Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) products that have the ability to provide cloud vertical distributions and directly classify multilayer cloud scenes and layer properties. To compare active sensor products with an imager such as MODIS, it is first necessary to define multilayer clouds in the context of their radiative impact on cloud retrievals. Three main parameters have thus been considered in this evaluation: (1) the maximum separation distance between two cloud layers, (2) the thermodynamic phase of those layers and (3) the upper-layer cloud optical thickness. The impact of including the Pavolonis–Heidinger multilayer cloud detection algorithm, introduced in Collection 6, to assist with multilayer cloud detection has also been assessed. For the year 2008, the MYD06 C6 multilayer cloud detection algorithm identifies roughly 20% of all cloudy pixels as multilayer (decreasing to about 13% if the Pavolonis–Heidinger algorithm output is not used). Evaluation against the merged CPR and CALIOP2B-CLDCLASS-lidar product shows that the MODIS multilayer detection results are quite sensitive to how multilayer clouds are defined in the radar and lidar product and that the algorithm performs better when the optical thickness of the upper cloud layer is greater than about 1.2 with a minimum layer separation distance of 1 km. Finally, we find that filtering the MYD06 cloud optical properties retrievals using the multilayer cloud flag improves aggregated statistics, particularly for ice cloud effective radius.

MODIS↗