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At least 775 records · Page 43

Lessons Learned from Numerical Simulations of the F-16XL Aircraft at Flight Conditions

Nine groups participating in the Cranked Arrow Wing Aerodynamics Project International (CAWAPI) project have contributed steady and unsteady viscous simulations of a full-scale, semi-span model of the F-16XL aircraft. Three different categories of flight Reynolds/Mach number combinations were computed and compared with flight-test measurements for the purpose of code validation and improved understanding of the flight physics. Steady-state simulations are done with several turbulence models of different complexity with no topology information required and which overcome Boussinesq-assumption problems in vortical flows. Detached-eddy simulation (DES) and its successor delayed detached-eddy simulation (DDES) have been used to compute the time accurate flow development. Common structured and unstructured grids as well as individually-adapted unstructured grids were used. Although discrepancies are observed in the comparisons, overall reasonable agreement is demonstrated for surface pressure distribution, local skin friction and boundary velocity profiles at subsonic speeds. The physical modeling, steady or unsteady, and the grid resolution both contribute to the discrepancies observed in the comparisons with flight data, but at this time it cannot be determined how much each part contributes to the whole. Overall it can be said that the technology readiness of CFD-simulation technology for the study of vehicle performance has matured since 2001 such that it can be used today with a reasonable level of confidence for complex configurations.

Rizzi, Arthur↗

What was Learned from Numerical Simulations of F-16XL (CAWAPI) at Flight Conditions

Nine groups participating in the CAWAPI project have contributed steady and unsteady viscous simulations of a full-scale, semi-span model of the F-16XL aircraft. Three different categories of flight Reynolds/Mach number combinations were computed and compared with flight-test measurements for the purpose of code validation and improved understanding of the flight physics. Steady-state simulations are done with several turbulence models of different complexity with no topology information required and which overcome Boussinesq-assumption problems in vortical flows. Detached-eddy simulation (DES) and its successor delayed detached-eddy simulation (DDES) have been used to compute the time accurate flow development. Common structured and unstructured grids as well as individually-adapted unstructured grids were used. Although discrepancies are observed in the comparisons, overall reasonable agreement is demonstrated for surface pressure distribution, local skin friction and boundary velocity profiles at subsonic speeds. The physical modeling, be it steady or unsteady flow, and the grid resolution both contribute to the discrepancies observed in the comparisons with flight data, but at this time it cannot be determined how much each part contributes to the whole. Overall it can be said that the technology readiness of CFD-simulation technology for the study of vehicle performance has matured since 2001 such that it can be used today with a reasonable level of confidence for complex configurations.

Rizzi, Arthur↗

Improving the Fire Weather Index System for Peatlands Using Peat-Specific Hydrological Input Data

The Canadian Fire Weather Index (FWI) system, even though originally developed and calibrated for an upland Jack pine forest, is used globally to estimate fire danger for any fire environment. However, for some environments, such as peatlands, the applicability of the FWI in its current form, is often questioned. In this study, we replaced the original moisture codes of the FWI with hydrological estimates resulting from the assimilation of satellite-based L-band passive microwave observations into a peatland-specific land surface model. In a conservative approach that maintains the integrity of the original FWI structure, the distributions of the hydrological estimates were first matched to those of the corresponding original moisture codes before replacement. The resulting adapted FWI, hereafter called FWIpeat, was evaluated using satellite-based information on fire presence over boreal peatlands from 2010 through 2018. Adapting the FWI with model- and satellite-based hydrological information was found to be beneficial in estimating fire danger, especially when replacing the deeper moisture codes of the FWI. For late-season fires, further adaptations of the fine fuel moisture code show even more improvement due to the fact that late-season fires are more hydrologically driven. The proposed FWIpeat should enable improved monitoring of fire risk in boreal peatlands.

Canadian Fire Weather Index↗

Uncertainty based Online Ensemble on Non-Stationary Data for Fusion Science

Machine Learning (ML) is poised to play a pivotal role in the development and operation of next-generation fusion devices. Fusion data shows non-stationary behavior due to drifts in the data. The drifts can arise from both experimental evolution and machine wear-and-tear. ML models assume stationary distribution and fail to maintain performance when encountered with non-stationary data streams.Online learning can be used to continuously adapt the models with new data as it is acquired. However, traditional online learning can suffer from short-term performance degradation, as ground truth are not available before making the prediction. To address this challenge, we propose uncertainty aware ensemble approach for online learning. We use Deep Gaussian Process Approximation (DGPA) technique for calibrated uncertainty estimation and use the uncertainty values to guide a meta-algorithm that produces predictions based on ensemble of learners. Moreover, DGPA also provides uncertainty estimation along with the predictions for decision makers. This paper demonstrates that the proposed method outperforms traditional online learning approach, and a naive ensemble without uncertainty guidance by about 7% and 6%, respectively, on B-coil deflection prediction at DIII-D Fusion Facility.

Rajput, Kishansingh [Thomas Jefferson National Acc↗

Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models

Abstract Background A mechanistic understanding of the spread of SARS-CoV-2 and diligent tracking of ongoing mutagenesis are of key importance to plan robust strategies for confining its transmission. Large numbers of available sequences and their dates of transmission provide an unprecedented opportunity to analyze evolutionary adaptation in novel ways. Addition of high-resolution structural information can reveal the functional basis of these processes at the molecular level. Integrated systems biology-directed analyses of these data layers afford valuable insights to build a global understanding of the COVID-19 pandemic. Results Here we identify globally distributed haplotypes from 15,789 SARS-CoV-2 genomes and model their success based on their duration, dispersal, and frequency in the host population. Our models identify mutations that are likely compensatory adaptive changes that allowed for rapid expansion of the virus. Functional predictions from structural analyses indicate that, contrary to previous reports, the Asp 614 Gly mutation in the spike glycoprotein (S) likely reduced transmission and the subsequent Pro 323 Leu mutation in the RNA-dependent RNA polymerase led to the precipitous spread of the virus. Our model also suggests that two mutations in the nsp13 helicase allowed for the adaptation of the virus to the Pacific Northwest of the USA. Finally, our explainable artificial intelligence algorithm identified a mutational hotspot in the sequence of S that also displays a signature of positive selection and may have implications for tissue or cell-specific expression of the virus. Conclusions These results provide valuable insights for the development of drugs and surveillance strategies to combat the current and future pandemics.

59 BASIC BIOLOGICAL SCIENCES↗

Laser Calibration of an Impact Disdrometer

A practical approach to developing an operational low-cost disdrometer hinges on implementing an effective in situ adaptive calibration strategy. This calibration strategy lowers the cost of the device and provides a method to guarantee continued automatic calibration. In previous work, a collocated tipping bucket rain gauge was utilized to provide a calibration signal to the disdrometer's digital signal processing software. Rainfall rate is proportional to the 11/3 moment of the drop size distribution (a 7/2 moment can also be assumed, depending on the choice of terminal velocity relationship). In the previous case, the disdrometer calibration was characterized and weighted to the 11/3 moment of the drop size distribution (DSD). Optical extinction by rainfall is proportional to the 2nd moment of the DSD. Using visible laser light as a means to focus and generate an auxiliary calibration signal, the adaptive calibration processing is significantly improved.

calibration↗

Three-Dimensional Distribution of a Major Desert Dust Outbreak over East Asia in March 2008 Derived from IASI Satellite Observations

We describe the daily evolution of the three-dimensional (3D) structure of a major dust outbreak initiated by an extratropical cyclone over East Asia in early March 2008, using new aerosol retrievals derived from satellite observations of IASI (Infrared Atmospheric Sounding Interferometer). A novel auto-adaptive Tikhonov-Phillips-type approach called AEROIASI is used to retrieve vertical profiles of dust extinction coefficient at 10 microns for most cloud-free IASI pixels, both over land and ocean. The dust vertical distribution derived from AEROIASI is shown to agree remarkably well with along-track transects of Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) spaceborne lidar vertical profiles (mean biases less than 110 meters, correlation of 0.95, and precision of 260 meters for mean altitudes of the dust layers). AEROIASI allows the daily characterization of the 3D transport pathways across East Asia of two dust plumes originating from the Gobi and North Chinese deserts. From AEROIASI retrievals, we provide evidence that (i) both dust plumes are transported over the Beijing region and the Yellow Sea as elevated layers above a shallow boundary layer, (ii) as they progress eastward, the dust layers are lifted up by the ascending motions near the core of the extratropical cyclone, and (iii) when being transported over the warm waters of the Japan Sea, turbulent mixing in the deep marine boundary layer leads to high dust concentrations down to the surface. AEROIASI observations and model simulations also show that the progression of the dust plumes across East Asia is tightly related to the advancing cold front of the extratropical cyclone.

Cuesta, Juan↗

CAMERA: A method for cost-aware, adaptive, multifidelity, efficient reliability analysis

Estimating probability of failure in aerospace systems is a critical requirement for flight certification and qualification. Failure probability estimation involves resolving tails of probability distributions, and Monte Carlo sampling methods are intractable when expensive high-fidelity simulations have to be queried. Here, we propose a method to use models of multiple fidelities that trade accuracy for computational efficiency. Specifically, we propose the use of multifidelity Gaussian process models to efficiently fuse models at multiple fidelity, thereby offering a cheap surrogate model that emulates the original model at all fidelities. Furthermore, we propose a novel sequential acquisition function based experiment design framework that can automatically select samples from appropriate fidelity models to make predictions about quantities of interest at the highest fidelity. We use our proposed approach in an importance sampling setting and demonstrate our method on the failure level set and probability estimation on synthetic test functions and two real-world applications, namely, the reliability analysis of a gas turbine engine blade using a finite element method and a transonic aerodynamic wing test case using Reynolds-averaged Navier-Stokes equations. We show that our method predicts the failure boundary and probability more accurately and at a fraction of the computational cost compared with using just a single expensive high-fidelity model. Finally, we show that our sequential approach is guaranteed to asymptotically converge to the true failure boundary with high probability.

97 MATHEMATICS AND COMPUTING↗

Performance analysis of an adaptive multiple access scheme for the message service of a land mobile satellite experiment (MSAT-X)

This paper describes an Adaptive Mobile Access Protocol (AMAP) for the message service of MSAT-X., a proposed experimental mobile satellite communication network. Message lengths generated by the mobiles are assumed to be uniformly distributed. The mobiles are dispersed over a wide geographical area and the channel data rate is limited. AMAP is a reservation based multiple access scheme. The available bandwidth is divided into subchannels, which are divided into reservation and message channels. The ALOHA multiple access scheme is employed in the reservation channels, while the message channels are demand assigned. AMAP adaptively reallocates the reservation and message channels to optimize the total average message delay.

Yan, T.-Y.↗

Switched Band-Pass Filters for Adaptive Transceivers

Switched band-pass filters are key components of proposed adaptive, software- defined radio transceivers that would be parts of envisioned digital-data-communication networks that would enable real-time acquisition and monitoring of data from geographically distributed sensors. Examples of sensors to be connected to such networks include security cameras, radio-frequency identification units, and geolocation units based on the Global Positioning System. Through suitable software configuration and without changing hardware, these transceivers could be made to operate according to any of a number of complex wireless-communication standards that could be characterized by diverse modulation schemes, bandwidths, and data-handling protocols. The adaptive transceivers would include field-programmable gate arrays (FPGAs) and digital signal-processing hardware. In the receiving path of a transceiver, the incoming signal would be amplified by a low-noise amplifier (LNA). The output spectrum of the LNA would be processed by a band-pass filter operating in the frequency range between 900 MHz and 2.4 GHz. Then a down-converter would translate the signal to a lower frequency range to facilitate analog-to-digital conversion, which would be followed by baseband processing by one or more FPGAs. In the transmitting path, a digital stream would first be converted to an analog signal, which would then be up-converted to a selected frequency band before being applied to a transmitting power amplifier. The aforementioned band-pass filter in the receiving path would be a combination of resonant inductor-and-capacitor filters and switched band-pass filters. The overall combination would implement a switch function designed mathematically to exhibit desired frequency responses and to switch the signal in each frequency band to an analog-to-digital converter appropriate for that band to produce a digital intermediate-frequency signal for digital signal processing.

Wang, Ray↗

A Future Vision of a Data Acquisition: Distributed Sensing, Processing, and Health Monitoring

This paper presents a vision fo a highly enhanced data acquisition and health monitoring system at NASA Stennis Space Center (SSC) rocket engine test facility. This vision includes the use of advanced processing capabilities in conjunction with highly autonomous distributed sensing and intelligence, to monitor and evaluate the health of data in the context of it's associated process. This method is expected to significantly reduce data acquisitions costs and improve system reliability. A Universal Signal Conditioning Amplifier (USCA) based system, under development at Kennedy Space Center, is being evaluated for adaptation to the SSC testing infrastructure. Kennedy's USCA architecture offers many advantages including flexible and auto-configuring data acquisition with improved calibration and verifiability. Possible enhancements at SSC may include multiplexing the distributed USCAs to reduce per channel cost, and the use of IEEE-485 to Allen-Bradley Control Net Gateways for interfacing with the resident control systems.

Figueroa, Fernando↗

Towards a Robust Adaptive Digital Twin for Fusion Applications

The development of a digital twin system for fusion applications is essential for enhancing the prediction, analysis, and optimization of complex plasma processes. Machine learning (ML), particularly deep learning has demonstrated strong capabilities in modeling such highly nonlinear and intricate systems. However, two critical challenges limit the deployment of deep learning-based digital twins: Uncertainty Quantification (UQ) and data drift. UQ is vital for ensuring trustworthy predictions, especially in decision-support scenarios. Additionally, data-driven models are often sensitive to changes in the underlying data distribution, such as shot-to-shot variations in fusion experiments, which can lead to performance degradation over time. To address these challenges, we are developing an uncertainty-aware, adaptive digital twin framework. Our approach incorporates deep learning models enhanced with Gaussian Process approximations for predictive uncertainty estimation, coupled with an online learning mechanism that enables continuous model adaptation to new experimental data. This adaptive capability allows the data driven models to respond effectively to evolving plasma behaviors and equipment conditions. Specifically, to mitigate the effects of shot-to-shot drift, our system updates itself incrementally as new data becomes available, improving both robustness and fidelity. Our vision is to evolve this data driven model into a self-sustaining digital twin system that leverages UQ based feedback to continuously refine itself and potentially support real-time decision making. This presentation will cover a brief background on uncertainty quantification for ML, our ongoing effort on development of UQ capabilities for ML, our data science pipeline from data collection to model development and analysis and online learning framework for modeling coil deflection at DIII-D. I will also briefly touch upon opportunities and challenges in development of digital twin framework.

Sammuli, Brian [General Atomics]↗

Three-dimensional Navier-Stokes calculations using solution-adapted grids

A three-dimensional solution-adaptive grid generation technique is presented. The adaptation technique redistributes grid points to improve the accuracy of a flow solution without increasing the number of grid points. It is applicable to structured grids with a multiblock topology. The method uses a numerical mapping and potential theory to modify the initial grid distribution based on the properties of the flow solution on the initial grid. The technique is demonstrated with two examples - a transonic finite wing and a supersonic blunt fin. The advantages are shown by comparing flow solutions on the adapted grids with those on the initial grids.

Henderson, T. L.↗

Discrete-time entropy formulation of optimal and adaptive control problems

The discrete-time version of the entropy formulation of optimal control of problems developed by G. N. Saridis (1988) is discussed. Given a dynamical system, the uncertainty in the selection of the control is characterized by the probability distribution (density) function which maximizes the total entropy. The equivalence between the optimal control problem and the optimal entropy problem is established, and the total entropy is decomposed into a term associated with the certainty equivalent control law, the entropy of estimation, and the so-called equivocation of the active transmission of information from the controller to the estimator. This provides a useful framework for studying the certainty equivalent and adaptive control laws.

Tsai, Yweting A.↗

Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes

Introduction: Mushroom-forming fungi comprise diverse species that develop complex multicellular structures. In cultivated species, both ecological adaptation and artificial selection have driven genome evolution. However, little is known about the connections among genotype, phenotype and adaptation in mushroom-forming fungi. Objectives: This study aimed to (1) uncover the population structure and demographic history of Lentinula edodes, (2) dissect the genetic basis of adaptive evolution in L. edodes, and (3) determine if genes related to fruiting body development are involved in adaptive evolution. Methods: We analyzed genomes and fruiting body-related traits (FBRTs) in 133 L. edodes strains and conducted RNA-seq analysis of fruiting body development in the YS69 strain. Combined methods of genomic scan for divergence, genome-wide association studies (GWAS), and RNA-seq were used to dissect the genetic basis of adaptive evolution. Results: We detected three distinct subgroups of L. edodes via single nucleotide polymorphisms, which showed robust phenotypic and temperature response differentiation and correlation with geographical distribution. Demographic history inference suggests that the subgroups diverged 36,871 generations ago. Moreover, L. edodes cultivars in China may have originated from the vicinity of Northeast China. A total of 942 genes were found to be related to genetic divergence by genomic scan, and 719 genes were identified to be candidates underlying FBRTs by GWAS. Integrating results of genomic scan and GWAS, 80 genes were detected to be related to phenotypic differentiation. A total of 364 genes related to fruiting body development were involved in genetic divergence and phenotypic differentiation. Conclusion: Adaptation to the local environment, especially temperature, triggered genetic divergence and phenotypic differentiation of L. edodes. A general model for genetic divergence and phenotypic differentiation during adaptive evolution in L. edodes, which involves in signal perception and transduction, transcriptional regulation, and fruiting body morphogenesis, was also integrated here.

59 BASIC BIOLOGICAL SCIENCES↗

Adaptive filtering of Echelle spectra of distant Quasars

The study of the Ly alpha - forest of distant (approximately greater than 3) Quasars is an important tool in obtaining a more detailed picture of the distribution of matter along the line of sight and thus of the general distribution of matter in the Universe and is therefore of important cosmological significance. Obviously, this is one of the tasks where spectral resolution plays an important role. The spectra used were obtained with the EFOSC at the ESO 3.6m telescope. Applying for the data reduction the standard Echelle procedure, as it is implemented for instance in the MIDAS-package, one uses stationary filters (e.g. median) for noise and cosmic particle event reduction in the 2-dimensional Echelle image. These filters are useful if the spatial spectrum of the noise reaches essentially higher frequencies then the highest resolution features in the image. Otherwise the resolution in the data will be degraded and the spectral lines smoothed. However, in the Echelle spectra the highest resolution is already in the range of one or a few pixels and therefore stationary filtering means always a loss of resolution. An Echelle reduction procedure on the basis of a space variable filter described which recognizes the local resolution in the presence of noise and adapts to it is developed. It was shown that this technique leads to an improvement in resolution by a factor of 2 with respect to standard procedures.

Priebe, A.↗

Using an architectural approach to integrate heterogeneous, distributed software components

Many computer programs cannot be easily integrated because their components are distributed and heterogeneous, i.e., they are implemented in diverse programming languages, use different data representation formats, or their runtime environments are incompatible. In many cases, programs are integrated by modifying their components or interposing mechanisms that handle communication and conversion tasks. For example, remote procedure call (RPC) helps integrate heterogeneous, distributed programs. When configuring such programs, however, mechanisms like RPC must be used explicitly by software developers in order to integrate collections of diverse components. Each collection may require a unique integration solution. This paper describes improvements to the concepts of software packaging and some of our experiences in constructing complex software systems from a wide variety of components in different execution environments. Software packaging is a process that automatically determines how to integrate a diverse collection of computer programs based on the types of components involved and the capabilities of available translators and adapters in an environment. Software packaging provides a context that relates such mechanisms to software integration processes and reduces the cost of configuring applications whose components are distributed or implemented in different programming languages. Our software packaging tool subsumes traditional integration tools like UNIX make by providing a rule-based approach to software integration that is independent of execution environments.

Callahan, John R.↗

Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits

When deep-sea hydrothermal fluids mix with cold oxygenated fluids, minerals precipitate out of solution and form hydrothermal deposits. These actively venting deep-sea hydrothermal deposits support a rich diversity of thermophilic microorganisms which are involved in a range of carbon, sulfur, nitrogen, and hydrogen metabolisms. Global patterns of thermophilic microbial diversity in deep-sea hydrothermal ecosystems have illustrated the strong connectivity between geological processes and microbial colonization, but little is known about the genomic diversity and physiological potential of these novel taxa. Here we explore this genomic diversity in 42 metagenomes from four deep-sea hydrothermal vent fields and a deep-sea volcano collected from 2004 to 2018 and document their potential implications in biogeochemical cycles. Our dataset represents 3635 metagenome-assembled genomes encompassing 511 novel and recently identified genera from deep-sea hydrothermal settings. Some of the novel bacterial (107) and archaeal genera (30) that were recently reported from the deep-sea Brothers volcano were also detected at the deep-sea hydrothermal vent fields, while 99 bacterial and 54 archaeal genera were endemic to the deep-sea Brothers volcano deposits. We report some of the first examples of medium- (≥ 50% complete, ≤ 10% contaminated) to high-quality (> 90% complete, < 5% contaminated) MAGs from phyla and families never previously identified, or poorly sampled, from deep-sea hydrothermal environments. We greatly expand the novel diversity of Thermoproteia, Patescibacteria (Candidate Phyla Radiation, CPR), and Chloroflexota found at deep-sea hydrothermal vents and identify a small sampling of two potentially novel phyla, designated JALSQH01 and JALWCF01. Metabolic pathway analysis of metagenomes provides insights into the prevalent carbon, nitrogen, sulfur, and hydrogen metabolic processes across all sites and illustrates sulfur and nitrogen metabolic “handoffs” in community interactions. We confirm that Campylobacteria and Gammaproteobacteria occupy similar ecological guilds but their prevalence in a particular site is driven by shifts in the geochemical environment. Our study of globally distributed hydrothermal vent deposits provides a significant expansion of microbial genomic diversity associated with hydrothermal vent deposits and highlights the metabolic adaptation of taxonomic guilds. Collectively, our results illustrate the importance of comparative biodiversity studies in establishing patterns of shared phylogenetic diversity and physiological ecology, while providing many targets for enrichment and cultivation of novel and endemic taxa.

59 BASIC BIOLOGICAL SCIENCES↗