Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Vulnerabilities”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 775 records · Page 43
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Integrative path modeling and QTL mapping identify maturity, stem strength, and cell wall composition driving lettuce resistance to Sclerotinia minor

Lettuce ( Lactuca sativa ) is highly vulnerable to Sclerotinia minor , the pathogen causing lettuce drop. Breeding for resistance is the most effective control strategy; however, full resistance has not been achieved, and current partial resistance sources are often linked with undesirable traits, such as early bolting. This study aimed to unravel the genetic basis of partial resistance to S. minor and its relationship with plant maturity (bolting), stem mechanical strength (SMS), and cell wall composition (CWC) using a recombinant inbred line (RIL) population derived from a cross between the susceptible iceberg cv. ‘Salinas’ and the resistant oil-seed accession PI 251246. Field evaluations indicated that resistance was linked to earlier bolting, stronger stems, and higher pentose content. Path analysis demonstrated that earlier-maturing plants exhibited increased resistance through enhanced SMS and modified CWC, particularly with higher xylose and lower arabinose levels. Further analysis indicated a significant relationship between syringyl lignin content and resistance, especially in plants with varying bolting responses. Three key quantitative trait loci (QTLs) on linkage groups (LG) 2, 6, and 7 were consistently associated with resistance, bolting, and SMS. Importantly, residual QTL analysis revealed that the resistance locus on LG7 acted independently of maturity, suggesting a distinct resistance mechanism. Callose synthase emerged as a key candidate gene within the LG7 resistance QTL, located near - but distinct from - genes associated with plant maturity and flowering. These findings provide valuable insights into decoupling resistance from early bolting, suggesting a pathway for breeding lettuce cultivars with improved disease resistance and delayed bolting.

Lactuca↗
DOE OSTI2025

Causal machine learning uncovers conditions for convective intensification driven by organic and sulfate aerosols

Aerosols are often hypothesized to invigorate deep convective clouds (DCCs), but observational evidence remains limited and inconclusive. Clarifying this hypothesis is critical for regions vulnerable to thunderstorms and flooding, particularly highly polluted coastal cities. Leveraging a novel causal discovery–inference pipeline and high-resolution observations near Houston, TX, we identify multiple causal pathways among aerosols (mostly organic and sulfate), DCCs, and meteorological factors. However, a direct causal link from aerosols to DCCs is found to be uncommon, occurring in less than 35% of analyzed scenarios, and is characterized by strong conditionality and nonlinearity. When aerosol impacts on DCCs do occur, they can be substantial, enhancing DCC core heights by approximately 1.7 km, with 92% of this effect concentrated in warmer-phase cloud regions. Notably, the presence of sea breezes and the inclusion of all measured aerosol particles each enhance DCCs in over 95% of aerosol-sensitive cases.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Tracking the protein conformational motions driving HIV-1 membrane fusion

HIV-1 Env (trimeric gp120/gp41) is the surface protein responsible for membrane fusion. The Env binds to the receptor proteins, which induces gp120 shedding leading to conformational changes of gp41 from the pre-fusion to post-fusion state, allowing its fusion peptide to embed in the host cell membrane and bringing the viral and host cell membranes together. The gp41 refolding is a target of several peptide inhibitors. Yet, the molecular mechanism of this dynamic process is still not well understood. In this study, we successfully simulate the conformational change of gp41 from pre-fusion to post-fusion state in atomistic resolution using all-atom structure-based models. We reveal that maintaining the directionality of protomer interactions in both pre-fusion and post-fusion states is crucial for gp41 refolding. Additionally, we find that HR1 inherently extends as a three-helical bundle toward the host-cell membrane without any bias. Importantly, we identify native contacts in the pre-fusion state that are critical for the proper refolding of gp41 towards the post-fusion state. Lastly, by incorporating the membrane-fusion inhibitors, T20 and SFT, we identify the most vulnerable stage in the fusion pathway that exhibits the greatest sensitivity to these drugs, which could aid in a better understanding of drug resistance mechanisms.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Compound flood simulations indicate rising public exposure to sewage-contaminated waters in Waikīkī, Hawai‘i

Waikīkī, Hawai‘i serves as a valuable case study for flood vulnerability due to its low elevation, present-day exposure to multiple flood sources, and role as the state’s economic engine. This study applies the high-resolution, open-source WRF-Hydro-CUFA (Coastal Urban Flood Application) model to simulate compound flood interactions among pluvial, fluvial, coastal, storm drain-driven, and subsurface processes, and to evaluate how flood characteristics in Waikīkī evolve under projected sea-level rise (SLR). Simulated water levels in an estuarine drainage canal, serving as the primary outlet for gravity-flow drainage from Waikīkī, show strong agreement with observations (r ≥ 0.935, R 2 ≥ 0.874), accurately reproducing flooding observed during recent 5-year and 50-year storm events. Simulations incorporating SLR demonstrate a shift in dominant flood drivers as sea levels rise. In addition, results identify critical thresholds at which elevated estuarine tailwater conditions cause widespread drainage backflow, eventually occurring in the absence of rainfall. These findings suggest that tidally driven flooding will progressively dominate over rainfall-driven events, increasing public exposure to highly contaminated canal and groundwater sources. The results underscore the urgent need to integrate water quality issues and drainage failure into coastal flood management strategies for low-lying urban environments, particularly those reliant on polluted estuarine waterways for stormwater management.

Compound flooding↗
DOE OSTI2026

The Q 10 of in situ microbial soil respiration varies with mean annual temperature, precipitation, pH, and plant cover: a meta-analysis and spatial prediction of Q 10

The temperature sensitivity of soil microbial respiration, commonly quantified using the Q 10 coefficient, is a key parameter in carbon cycle models. Uncovering how environmental factors affect in situ Q 10 values can therefore provide critical insight into potential shifts in global carbon stocks under climate change. We collected data from previously published field experiments that measured soil microbial respiration across a range of temperatures. We hypothesized that the Q 10 coefficient of in situ soil microbial respiration would vary based on environmental factors including mean annual temperature (MAT), mean annual precipitation (MAP), plant cover type, pH, soil C:N, and latitude. Linear regression revealed that Q 10 correlates negatively with MAT and MAP and positively with pH and absolute latitude. Additionally, average Q 10 varied significantly across different plant cover types; it was highest in mountain grasslands and lowest in tropical moist forests. Variation in microbial Q 10 across environmental factors may arise from underlying mechanisms such as enzyme kinetics, substrate availability and complexity, and microbial adaptation. To capture patterns in Q 10 more comprehensively, we developed a multiple linear regression model of Q 10 based on the most individually significant environmental drivers and applied it to public datasets to generate a global map of predicted Q 10 . Q 10 was higher in high-latitude and high-altitude regions, where large permafrost carbon stores are vulnerable to thawing and decomposition. We also compared fits between the Q 10 equation and a model produced from macromolecular rate theory (MMRT). We found that the MMRT model had the superior fit and may be better suited to model temperature sensitivity of complex biological reactions. Overall, our results emphasize that relationships between microbial Q 10 and environmental variables should be accounted for in climate models. Incorporating these variations in the Q 10 parameter, rather than using a fixed value, will help predict whether CO 2 emissions will be buffered or exacerbated by soil microbial respiration under climate change.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Amplified risk of spatially compounding droughts during co-occurrences of modes of natural ocean variability

Abstract Spatially compounding droughts over multiple regions pose amplifying pressures on the global food system, the reinsurance industry, and the global economy. Using observations and climate model simulations, we analyze the influence of various natural Ocean variability modes on the likelihood, extent, and severity of compound droughts across ten regions that have similar precipitation seasonality and cover important breadbaskets and vulnerable populations. Although a majority of compound droughts are associated with El Niños, a positive Indian Ocean Dipole, and cold phases of the Atlantic Niño and Tropical North Atlantic (TNA) can substantially modulate their characteristics. Cold TNA conditions have the largest amplifying effect on El Niño-related compound droughts. While the probability of compound droughts is ~3 times higher during El Niño conditions relative to neutral conditions, it is ~7 times higher when cold TNA and El Niño conditions co-occur. The probability of widespread and severe compound droughts is also amplified by a factor of ~3 and ~2.5 during these co-occurring modes relative to El Niño conditions alone. Our analysis demonstrates that co-occurrences of these modes result in widespread precipitation deficits across the tropics by inducing anomalous subsidence, and reducing lower-level moisture convergence over the study regions. Our results emphasize the need for considering interactions within the larger climate system in characterizing compound drought risks rather than focusing on teleconnections from individual modes. Understanding the physical drivers and characteristics of compound droughts has important implications for predicting their occurrence and characterizing their impacts on interconnected societal systems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma

Despite recent advancements in the treatment of multiple myeloma (MM), nearly all patients ultimately relapse and many become refractory to multiple lines of therapies. Therefore, we not only need the ability to predict which patients are at high risk for disease progression but also a means to understand the mechanisms underlying their risk. Here, we report a transcriptional regulatory network (TRN) for MM inferred from cross-sectional multi-omics data from 881 patients that predicts how 124 chromosomal abnormalities and somatic mutations causally perturb 392 transcription regulators of 8549 genes to manifest in distinct clinical phenotypes and outcomes. We identified 141 genetic programs whose activity profiles stratify patients into 25 distinct transcriptional states and proved to be more predictive of outcomes than did mutations. The coherence of these programs and accuracy of our network-based risk prediction was validated in two independent datasets. We observed subtype-specific vulnerabilities to interventions with existing drugs and revealed plausible mechanisms for relapse, including the establishment of an immunosuppressive microenvironment. Investigation of the t(4;14) clinical subtype using the TRN revealed that 16% of these patients exhibit an extreme-risk combination of genetic programs (median progression-free survival of 5 months) that create a distinct phenotype with targetable genes and pathways.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Pan-cancer proteogenomic investigations identify post-transcriptional kinase targets

Identifying genomic alterations of cancer proteins has guided the development of targeted therapies, but proteomic analyses are required to validate and reveal new treatment opportunities. Herein, we develop a new algorithm, OPPTI, to discover overexpressed kinase proteins across 10 cancer types using global mass spectrometry proteomics data of 1,071 cases. OPPTI outperforms existing methods by leveraging multiple co-expressed markers to identify targets overexpressed in a subset of tumors. OPPTI-identified overexpression of ERBB2 and EGFR proteins correlates with genomic amplifications, while CDK4/6, PDK1, and MET protein overexpression frequently occur without corresponding DNA- and RNA-level alterations. Analyzing CRISPR screen data, we confirm expression-driven dependencies of multiple currently-druggable and new target kinases whose expressions are validated by immunochemistry. Identified kinases are further associated with up-regulated phosphorylation levels of corresponding signaling pathways. Collectively, our results reveal protein-level aberrations—sometimes not observed by genomics—represent cancer vulnerabilities that may be targeted in precision oncology.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

Protection and restoration of coastal habitats yield multiple benefits for urban residents as sea levels rise

Globally, rising seas threaten massive numbers of people and significant infrastructure. Adaptation strategies increasingly incorporate nature-based solutions. New science can illuminate where these solutions are appropriate in urban environments and what benefits they provide to people. Together with stakeholders in San Mateo County, California, USA, we co-developed nature-based solutions to support adaptation planning. We created six guiding principles to shape planning, summarized vulnerability to sea-level rise and opportunities for nature-based solutions, created three adaptation scenarios, and compared multiple benefits provided by each scenario. Adaptation scenarios that included investments in nature-based solutions deliver up to eight times the benefits of a traditionally engineered baseline as well as additional habitat for key species. The magnitude and distribution of benefits varied at subregional scales along the coastline. Our results demonstrate practical tools and engagement approaches to assessing the multiple benefits of nature-based solutions in an urban estuary that can be replicated in other regions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Sensitivity of mesoscale modeling to urban morphological feature inputs and implications for characterizing urban sustainability

We examine the differences in meteorological output from the Weather Research and Forecasting (WRF) model run at 270 m horizontal resolution using 10 m, 100 m and 1 km resolution 3D neighborhood morphological inputs and with no morphological inputs. We find that the spatial variability in temperature, humidity, and other meteorological variables across the city can vary with the resolution and the coverage of the 3D urban morphological input, and that larger differences occur between simulations run without 3D morphological input and those run with some type of 3D morphology. We also find that the inclusion of input-building-defined roughness length calculations would improve simulation results further. We show that these inputs produce different patterns of heat wave spatial heterogeneity across the city of Washington, DC. These findings suggest that understanding neighborhood level urban sustainability under extreme heat waves, especially for vulnerable neighborhoods, requires attention to the representation of surface terrain in numerical weather models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Burning Embers: Towards more transparent and robust climate change risk assessments

The Intergovernmental Panel on Climate Change (IPCC) assessments provide policy-relevant insights about climate impacts, vulnerabilities, and adaptation through a process of peer-reviewed literature assessments underpinned by expert judgement. An iconic output from these assessments is the “burning embers” diagram. Burning embers were first used in the Third Assessment Report to visualize reasons for concern, which aggregate risks from various systems and sectors. In these diagrams, colour transitions show changes in the assessed level of risk to humans and ecosystems as a function of climate change indicated by increasing levels of global mean temperature. Here we review the approach to the construction of burning embers, its evolution across the various IPCC reports, and recent methodological advances in the elicitation process to reduce subjectivity in the expert judgement and improve the transparency of the assessment. We recommend the use of a standardized, transparent process of expert elicitation in the production of burning embers diagrams to enhance their quality, comparability, and credibility.

Zommers, Zinta↗
DOE OSTI2022

Mechanisms of woody-plant mortality under rising drought, CO 2 and vapour pressure deficit

Drought-associated woody plant mortality may have increased over the past several decades, and is projected to increase in the future, impacting terrestrial climate forcing, biodiversity, and resource availability. The mechanisms underlying such mortality, however, are debated owing to interactions between multiple drivers and mechanisms. In this work, we synthesize knowledge of drought-related tree mortality under a warming and drying atmosphere with rising atmospheric CO 2 . Drought-associated mortality results from the depletion of pools of water and carbon within a plant and declines in their fluxes relative to demand by living tissues. These pools and fluxes are interdependent and underlay plant defenses against biotic agents. Death via failure to maintain a positive water balance is particularly dependent on soil-to-root conductance, capacitance, vulnerability to hydraulic failure, cuticular water losses, and dehydration tolerance, all of which could be exacerbated by reduced carbon supply rates to support cellular survival e.g. the carbon starvation process. The depletion of plant water and carbon pools accelerates under rising vapor pressure deficit; however, increasing CO 2 can mitigate these impacts. Advancing knowledge and reducing predictive uncertainties requires studies that integrate carbon, water, and defensive processes, and utilize a range of experimental and modeling approaches.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Probing ferroelectric domain structures and their switching dynamics in SrBi2Ta2O9 by in-situ electric biasing in transmission electron microscopy

Abstract Lead-free SrBi 2 Ta 2 O 9 (SBT) has been a promising ferroelectric material for various applications such as electronics and data storage due to its outstanding ferroelectric properties including high fatigue endurance and low leakage current. However, the atomic-scale domain structure and switching dynamics of ferroelectric SBT remain elusive. This study reveals that spontaneous polarization arises from canted bismuth-cation displacements, forming 90° and Ising-type 180° domain walls. Interestingly, topological pairs of ferroelectric vortex and antivortex connect ferroelectric boundaries where three domain walls converge. In situ electrical biasing transmission electron microscopy (TEM) reveals the dominance of 180° switching over 90°, where oxygen octahedral connectivity is protected by ferroelastic energy in the 90° domain wall. Consequently, all 180° domain walls and (anti)vortices are removed, leaving only 90° domain walls in the electrically poled states. Chemical deterioration along domain walls highlights vulnerability of SBT to ferroelectric fatigue. This study provides insight into crucial aspects for practical applications of SBT.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Spatial pattern of lake evaporation increases under global warming linked to regional hydroclimate change

Abstract Lakes are critical natural resources that are vulnerable to climate change. In a warmer climate, lake evaporation is projected to increase globally, but with substantial variation between regions. Here, based on ensemble projections of climate and lake models and an attribution method, we show that future lake evaporation increase is strongly modulated by regional hydroclimate change. Specifically, a drying hydroclimate will amplify evaporation increase by enlarging surface vapor pressure deficit and reducing cloud shortwave reflection. Future lake evaporation increase is amplified in tropical America, the Mediterranean and Southeast China with drier future hydroclimates, and dampened in high latitudes and the Tibetan Plateau with wetter future hydroclimates. Such spatially coupled changes in lake evaporation and hydroclimate have important implications on regional lake water balance and volume change, which can aggravate water scarcity and flood risks.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Adding labile carbon to peatland soils triggers deep carbon breakdown

Peatlands store vast amounts of carbon, with deep peat carbon remaining stable due to limited thermodynamic energy and transport. However, climate change-induced increases in labile carbon inputs could destabilize these stores. Here, we combined DNA stable isotope probing with stable isotope-assisted metabolomics employing a multi-platform approach to investigate microbial dynamics driving deep peat carbon degradation upon labile carbon (e.g., glucose) amendment. Our findings highlight the vulnerability of deep peat carbon, as glucose addition triggers the breakdown of older organic matter. By uniquely integrating these techniques, we identified active glucose metabolizers to specific microbial populations and mapped carbon flow through microbial networks, elucidating their role in priming recalcitrant carbon mineralization. This multi-omics approach offers crucial insights into how changing resources reshape the peatland microbiome, enhancing our understanding of deep carbon processing, and refining model parameterization to predict microbial responses and carbon cycle feedbacks under global change pressures.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Rising temperatures intensify drought propagation and severity across the contiguous United States

Droughts can propagate from meteorological droughts (MD) into agricultural (AD) and hydrological droughts (HD). However, the mechanisms by which rising temperatures and changes in precipitation amount influence MD propagation, and how these dynamics vary across U.S., are not yet fully understood. This gap is critical given the U.S.’s diverse climates and land-use patterns, which lead to region-specific drought vulnerabilities and impacts, such as the 2012 AD in the Great Plains and the 2014 HD in the western U.S. Using a dynamical-statistical framework, we assess warming impacts on drought propagation. Results reveal that the Midwest and Southeast, key agricultural regions, show the largest increases in MD propagation to AD/HD, driven by rising temperatures and declining precipitation, though magnitudes vary regionally. In contrast, the Northeast shows reduced propagation due to increased year-round precipitation. Higher-intensity AD/HD events become disproportionately more likely, with rates varying by region and MD intensity.

Yan, Hongxiang [Pacific Northwest National Laborat↗
DOE OSTI2021

Tunable, Bacterio-Instructive Scaffolds Made from Functional Graphenic Materials

The balance of bacterial populations in the human body is critical for human health. Researchers have aimed to control bacterial populations using antibiotic substrates. However, antibiotic materials that non-selectively kill bacteria can compromise health by eliminating beneficial bacteria, which leaves the body vulnerable to colonization by harmful pathogens. Due to their chemical tunablity and unique surface properties, graphene oxide (GO)-based materials – termed “functional graphenic materials” (FGMs) – have been previously designed to be antibacterial but have the capacity to actively adhere and instruct probiotics to maintain human health. Numerous studies have demonstrated that negatively and positively charged surfaces influence bacterial adhesion through electrostatic interactions with the negatively charged bacterial surface. We found that tuning the surface charge of FGMs provides an avenue to control bacterial attachment without compromising vitality. Using E. coli as a model organism for gram-negative bacteria, we demonstrate that negatively charged Claisen graphene (CG), a reduced and carboxylated FGM, is bacterio-repellent through electrostatic repulsion with the bacterial surface. Though positively charged poly-L-lysine (PLL) is antibacterial when free in solution by inserting into the bacterial cell wall, here, we found that covalent conjugation of PLL to CG (giving PLLn-G) masks the antimicrobial activity of PLL by restricting polypeptide mobility. This allows the immobilized positive charge of the PLLn-Gs to be leveraged for E. coli adhesion through electrostatic attraction. We identified the magnitude of positive charge of the PLLn-G conjugates, which is modulated by the length of the PLL peptide, as an important parameter to tune the balance between the opposing forces of bacterial adhesion and proliferation. We also tested adhesion of gram-positive B. subtilis to these FGMs and found that the effect of FGM charge is less pronounced. B. subtilis adheres nondiscriminatory to all FGMs, regardless of charge, but adhesion is scarce and localized. Overall, this work demonstrates that FGMs can be tuned to selectively control bacterial response, paving the way for future development of FGM-based biomaterials as bacterio-instructive scaffolds through careful design of FGM surface chemistry.

Eckhart, Karoline E.↗
DOE OSTI2020

Desalination for a circular water economy

Today's water systems are enabled by ample fresh water sources, low-cost centralized treatment, and facile wastewater disposal. Climatic change, aging infrastructure, and source water contamination have exposed the vulnerabilities of this linear water paradigm. While seawater desalination enables coastal communities to augment their supply, more broadly securing water systems for municipal, industrial, and agricultural water users will require distributed desalination and fit-for-purpose reuse of nontraditional water sources. Our linear water economy must evolve into a resilient circular water economy, where water is continuously reused and “contaminants” become the feedstocks for other economically valuable processes. Additionally, technology innovation is needed to deliver autonomous, precise, resilient, intensified, modular, and electrified desalination systems that reduce the cost, improve the performance, and enhance the resilience of nontraditional water reuse systems. Meanwhile, strong federal leadership and coordination is needed to accelerate desalination research, promote information gathering efforts to direct technology development, and create an expanded role for non-profit organizations in knowledge dissemination.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗