Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Variational inference”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 775 records · Page 43
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

From remotely sensed solar-induced chlorophyll fluorescence to ecosystem structure, function, and service: Part I—Harnessing theory

Solar-induced chlorophyll fluorescence (SIF) is a remotely sensed optical signal emitted during the light reactions of photosynthesis. The past two decades have witnessed an explosion in availability of SIF data at increasingly higher spatial and temporal resolutions, sparking applications in diverse research sectors (e.g., ecology, agriculture, hydrology, climate, and socioeconomics). These applications must deal with complexities caused by tremendous variations in scale and the impacts of interacting and superimposing plant physiology and three-dimensional vegetation structure on the emission and scattering of SIF. At present, these complexities have not been overcome. To advance future research, the two companion reviews aim to (1) develop an analytical framework for inferring terrestrial vegetation structures and function that are tied to SIF emission, (2) synthesize progress and identify challenges in SIF research via the lens of multi-sector applications, and (3) map out actionable solutions to tackle these challenges and offer our vision for research priorities over the next 5-10 years based on the proposed analytical framework. This paper is the first of the two companion reviews, and theory oriented. It introduces a theoretically rigorous yet practically applicable analytical framework. Guided by this framework, we offer theoretical perspectives on three overarching questions: (1) The forward (mechanism) question—How are the dynamics of SIF affected by terrestrial ecosystem structure and function? (2) The inference question: What aspects of terrestrial ecosystem structure, function, and service can be reliably inferred from remotely sensed SIF and how? (3) The innovation question: What innovations are needed to realize the full potential of SIF remote sensing for real-world applications under climate change? In conclusion, the analytical framework elucidates that process complexity must be appreciated in inferring ecosystem structure and function from the observed SIF; this framework can serve as a diagnosis and inference tool for versatile applications across diverse spatial and temporal scales.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

As a Matter of State: The Role of Thermodynamics in Magnetohydrodynamic Turbulence

Turbulence simulations play a key role in advancing the general understanding of the physical properties of turbulence and in interpreting astrophysical observations of turbulent plasmas. For the sake of simplicity, however, turbulence simulations are often conducted in the isothermal limit. Given that the majority of astrophysical systems are not governed by isothermal dynamics, we aim to quantify the impact of thermodynamics on the physics of turbulence, through varying adiabatic index, γ, combined with a range of optically thin cooling functions. Here, we present a suite of ideal magnetohydrodynamics simulations of thermally balanced stationary turbulence in the subsonic, super-Alfvénic, high ${\beta }_{{\rm{p}}}$ (ratio of thermal to magnetic pressure) regime, where turbulent dissipation is balanced by two idealized cooling functions (approximating linear cooling and free–free emission) and examine the impact of the equation of state by considering cases that correspond to isothermal, monatomic, and diatomic gases. We find a strong anticorrelation between thermal and magnetic pressure independent of thermodynamics, whereas the strong anticorrelation between density and magnetic field found in the isothermal case weakens with increasing γ. Similarly, the linear relation between variations in density and thermal pressure with sonic Mach number becomes steeper with increasing γ. This suggests that there exists a degeneracy in these relations with respect to thermodynamics and Mach number in this regime, which is dominated by slow magnetosonic modes. These results have implications for attempts to infer (e.g.,) Mach numbers from (e.g.,) Faraday rotation measurements, without additional information regarding the thermodynamics of the plasma. However, our results suggest that this degeneracy can be broken by utilizing higher-order moments of observable distribution functions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Isotopic Evolution of the Inner Solar System Inferred from Molybdenum Isotopes in Meteorites

The fundamentally different isotopic compositions of non-carbonaceous (NC) and carbonaceous (CC) meteorites reveal the presence of two distinct reservoirs in the solar protoplanetary disk that were likely separated by Jupiter. However, the extent of material exchange between these reservoirs, and how this affected the composition of the inner disk, are not known. Here we show that NC meteorites display broadly correlated isotopic variations for Mo, Ti, Cr, and Ni, indicating the addition of isotopically distinct material to the inner disk. The added material resembles bulk CC meteorites and Ca–Al-rich inclusions in terms of its enrichment in neutron-rich isotopes, but unlike the latter materials is also enriched in s-process nuclides. The comparison of the isotopic composition of NC meteorites with the accretion ages of their parent bodies reveals that the isotopic variations within the inner disk do not reflect a continuous compositional change through the addition of CC dust, indicating an efficient separation of the NC and CC reservoirs and limited exchange of material between the inner and outer disk. Instead, the isotopic variations among NC meteorites more likely record a rapidly changing composition of the disk during infall from the Sun's parental molecular cloud, where each planetesimal locks the instant composition of the disk when it forms. Here, a corollary of this model is that late-formed planetesimals in the inner disk predominantly accreted from secondary dust that was produced by collisions among pre-existing NC planetesimals.

58 GEOSCIENCES↗
NASA NTRS1984

Magnetotail flux ropes

The structures of flux ropes in the distant magnetotail are inferred from correlated ISEE-3 wave, high energy particle and electron plasma data from December 1982 through March 1983. The spacecraft was then travelling in a figure-8 pattern which took it into the region between the moon and 230 earth radii. The ropes were identified by a bipolar variation along one magnetic component while the spacecraft was in the north lobe. The double peaked magnetic signature included a strong axial field, a weaker circumferential field, and uniformity across the axis. The rope was imbedded in the lobe fields and contained hot, tailward streaming plasma. Finally, a correlation was derived between the presence of the ropes and a high Kp value.

Sibeck, D. G.↗
NASA NTRS1986

Observations of neutral atoms in the Rho Ophiuchi cloud

New observations of lines from neutral atoms in the lines of sight to three stars in the Rho Oph cloud are combined with literature data to look for evidence of density-enhanced regions with higher elemental depletions than those characterizing the cloud as a whole. The depletions inferred from neutral species, however, are comparable to those measured directly from observations of ions, suggesting that no strong density enhancements exist in the observed lines of sight. This conclusion is supported by electron densities derived from the observed ionization fractions, which also show no evidence for a strong variation of density with depth in the cloud. It appears that the overall density (and overall level of depletion) in the cloud is higher than in typical diffuse clouds, despite the apparent lack of strong condensations with enhanced relative depletions.

Snow, T. P.↗
NASA NTRS2004

Temporal-Spatial Structure of Magnetic Merging at the Magnetopause Inferred from 557.7-nm All-Sky Images

We demonstrate that high-resolution 557.7-nm all-sky images are useful tools for investigating the spatial and temporal evolution of merging on the dayside magnetopause. Analysis of ground and satellite measurements leads us to conclude that high-latitude merging events can occur at multiple sites simultaneously and vary asynchronously on time scales of 30 s to 3 min. Variations of 557.7 nm emissions were observed at a 10 s cadence at Ny-Alesund on 19 December 2001, while significant changes in the IMF clock angle were reaching the magnetopause. The optical patterns are consistent with a scenario in which merging occurs around the rim of the high-latitude cusp at positions dictated by the IMF clock angle. Electrons energized at merging sites represent plausible sources for 557.7 nm emissions in the cusp. Polar observations at the magnetopause have directly linked enhanced fluxes of > or = 0.5 keV electrons with merging. Spectra of electrons responsible for some of the emissions, measured during a DMSP F15 overflight, exhibit "inverted-V" features, indicating further acceleration above the ionosphere. SuperDARN spectral width boundaries, characteristic of open-closed field line transitions, are located at the equatorward edge of the 557.7nm emissions. Optical data suggest that with IMF B(sub Y) > 0, the Northern Hemisphere cusp divides into three source regions. When the IMF clock angle was approx. 150 deg structured 557.7-nm emissions came from east of the 13:00 MLT meridian. At larger clock angles the emissions appeared between 12:00 and 13:00 MLT. No significant 557.7-nm emissions were detected in the prenoon MLT sector. MHD simulations corroborate our scenario, showing that with the observed large dipole-tilt and IMF clock angles, merging sites develop near the front and eastern portions of the high-altitude cusp rim in the Northern Hemisphere and near the western part of the cusp rim in the Southern Hemisphere.

Maynard, N. C.↗
NASA NTRS2023

From Remotely-Sensed SIF to Ecosystem Structure, Function, and Service: Part I - Harnessing Theory

Solar-induced chlorophyll fluorescence (SIF) is a remotely sensed optical signal emitted during the light reactions of photosynthesis. The past two decades have witnessed an explosion in availability of SIF data at increasingly higher spatial and temporal resolutions, sparking applications in diverse research sectors (e.g., ecology, agriculture, hydrology, climate, and socioeconomics). These applications must deal with complexities caused by tremendous variations in scale and the impacts of interacting and superimposing plant physiology and three-dimensional vegetation structure on the emission and scattering of SIF. At present, these complexities have not been overcome. To advance future research, the two companion reviews aim to (1) develop an analytical framework for inferring terrestrial vegetation structures and function that are tied to SIF emission, (2) synthesize progress and identify challenges in SIF research via the lens of multi-sector applications, and (3) map out actionable solutions to tackle these challenges and offer our vision for research priorities over the next 5–10 years based on the proposed analytical framework. This paper is the first of the two companion reviews, and theory oriented. It introduces a theoretically rigorous yet practically applicable analytical framework. Guided by this framework, we offer theoretical perspectives on three overarching questions: (1) The forward (mechanism) question—How are the dynamics of SIF affected by terrestrial ecosystem structure and function? (2) The inference question: What aspects of terrestrial ecosystem structure, function, and service can be reliably inferred from remotely sensed SIF and how? (3) The innovation question: What innovations are needed to realize the full potential of SIF remote sensing for real-world applications under climate change? The analytical framework elucidates that process complexity must be appreciated in inferring ecosystem structure and function from the observed SIF; this framework can serve as a diagnosis and inference tool for versatile applications across diverse spatial and temporal scales.

carbon fluxes↗
DOE OSTI2026

pyFLANK, a graph neural network based null distribution inference model for F ST outlier detection

Detecting genomic regions under selection is essential for understanding how populations adapt to different environments, yet it remains challenging due to the confounding effects of demographic history and linkage disequilibrium (LD). Fixation index (F ST ) is a widely used statistic to identify genomic regions under adaptation. However, identifying genes under selection by defining F ST outliers often remains challenging, owing to confounding effects of underlying demographic history. Traditional methods assume independence among loci and rely on simple demographic models, while newer models perform much better but are computationally expensive and not easily scalable. Here, we present pyFLANK, an open-source and automated Python implementation which detects F ST outliers using a null distribution inferred from quasi-independent loci. Our tool integrates three approaches to identify loci obeying a null distribution: graph neural network (GNN) inference, linkage disequilibrium (LD)-based inference, and user-defined input. Because pyFLANK uses GNN-based inference of quasi-independent loci, it yields a more accurate null model with less need for user parameter input. In simulation experiments, pyFLANK achieved lower false positive rates than current methods while maintaining comparable detection power, indicating that its refined null model better distinguishes true adaptive loci from background variation. The GNN-based model, in particular, detected additional loci associated with phenotypic variance that were not identified by existing methods. Assessments of simulation and real data from different species demonstrate that pyFLANK achieves lower false positive rates compared with other commonly used F ST outlier detectors, while maintaining comparable detection power and excellent computational performance, providing a robust and user-friendly tool for identifying loci under divergent selection. It extends existing F ST outlier frameworks by incorporating explicit LD-aware strategies for null model calibration. The method is intended as a practical and scalable complement to existing genome scan approaches.

FST↗
NASA NTRS1983

Dependence of radio emission in large H alpha flares 1967-1970 upon the orientation of the local solar magnetic field

Published data on ionizing radiation (as reflected in sudden ionospheric disturbances), H-alpha importance, 10-cm flux, dynamic spectrum, and 200-MHz flux are analyzed for a group of 84 solar flares (from 1967 to 1970) classified by Pudovkin and Chertkov (1976). The group consists of 29 flares with southern orientation of the 100,000-km-scale overlying magnetic field, 32 with northern orientation, and 23 with indeterminate orientation; all have H-alpha importance greater than about 2. Slightly greater X-ray and optical emissions, but one-order-of-magnitude greater prompt 200-MHz and 10-cm fluxes are found in southern as compared to northern-oriented flares. It is inferred that the amount of electromagnetic flare energy radiated promptly from the corona, as compared with that radiated from the chromosphere, was significantly affectly by the orientation of the overlying large-scale magnetic field during the period of observation. This trend is shown to be consistent despite some periodic variation.

Roelof, E. C.↗
NASA NTRS1995

Relating Radar Backscatter to Boreal Forest Canopy Parameters

During the first intensive field campaign for the Boreal Ecosystem Atmospheric Study (BOREAS) in August of 1993, AIRSAR data were acquired over the entire BOREAS study area. On of the objectives of the AIRSAR deployment was to examine the sensitivity of the radar signal to vegetation type and biomass distribution in the boreal forest and to develop algorithms for inferring vegetation parameters. During the experiment a set of ground measurements were also made to support the AIRSAR data analysis. The dominant stands in the study area consist of black spruce, young jack pine, old jack pine, and aspen. These stands represent a wide range of biomass and canopy architectural variations which can be distinguished in SAR images.

radar backscatter↗
NASA NTRS2001

Highly Siderophile Element Abundances in Martian Meteorites

Critical evaluation of new and literature data for highly siderophile elements (HSE) in Martian (SNC) meteorites allows several first order conclusions to be drawn. (i) Re concentrations in SNC meteorites are nearly constant (within a factor of two) and do not correlate with rock type. Exceptions to this rule are Chassigny and Dar al Gani (DaG) 476, both of which are inferred to have experienced terrestrial Re contamination. (ii) Fractionations between Rh and Pd are small. Excluding Shergotty, the Rh/Pd ratio of the SNC suite is 0.22\pm0.05. (iii) Os and Ir contents vary by about four orders of magnitude; and positive correlations with MgO, Cr, and Ni suggest that these variations are not controlled by sulfide fractionation. A possible exception is the orthopyroxenite ALH84001, whose HSE's (including Ni, which is compatible in opx) are very low. (iv) Zagami, Shergotty, and Nakhla have nearly identical HSE signatures. Shergotty and Zagami have experienced assimilation-fractional crystallization (AFC) and have "crustal" Sr and Nd isotopic signatures. Conversely, the Nakhla parent was a small degree partial melt of a depleted mantle that interacted little with the Martian crust. These observations suggest that "evolved" HSE signatures can be produced by either fractional crystallization or small degrees of partial melting. (v) Chassigny and other mafic SNC's have HSE signatures that are very distinct from those of Nakhla-Zagami-Shergotty. The HSE elemental ratios of mafic SNC's approach chondritic, implying that the Martian mantle has nearly chondritic relative abundances of the HSE's. (vi) This chondritic HSE signature is observed in SNC's of various ages, suggesting that this is an ancient feature that has not evolved over time. (vii) No correlation is observed between HSE's and signatures of crustal contamination (e.g., Sr isotopes), indicating that the HSE signatures of the SNC suite are not derived from the crust. (vii) The Ru/Pd for the SNC suite ratio is about 0.5 chondritic. We attribute this depletion of Ru to the presence of spinel in the SNC source regions. (viii) Assignment of this depletion of Ru to spinel seems to also imply that spinel is not the cause of Os and Ir fractionations, requiring some other mafic phase to account for the observed variations. -----.

Jones, J. H.↗
NASA NTRS2012

Test of Shi et al. Method to Infer the Magnetic Reconnection Geometry from Spacecraft Data: MHD Simulation with Guide Field and Antiparallel Kinetic Simulation

When analyzing data from an array of spacecraft (such as Cluster or MMS) crossing a site of magnetic reconnection, it is desirable to be able to accurately determine the orientation of the reconnection site. If the reconnection is quasi-two dimensional, there are three key directions, the direction of maximum inhomogeneity (the direction across the reconnection site), the direction of the reconnecting component of the magnetic field, and the direction of rough invariance (the "out of plane" direction). Using simulated spacecraft observations of magnetic reconnection in the geomagnetic tail, we extend our previous tests of the direction-finding method developed by Shi et al. (2005) and the method to determine the structure velocity relative to the spacecraft Vstr. These methods require data from four proximate spacecraft. We add artificial noise and calibration errors to the simulation fields, and then use the perturbed gradient of the magnetic field B and perturbed time derivative dB/dt, as described by Denton et al. (2010). Three new simulations are examined: a weakly three-dimensional, i.e., quasi-two-dimensional, MHD simulation without a guide field, a quasi-two-dimensional MHD simulation with a guide field, and a two-dimensional full dynamics kinetic simulation with inherent noise so that the apparent minimum gradient was not exactly zero, even without added artificial errors. We also examined variations of the spacecraft trajectory for the kinetic simulation. The accuracy of the directions found varied depending on the simulation and spacecraft trajectory, but all the directions could be found within about 10 for all cases. Various aspects of the method were examined, including how to choose averaging intervals and the best intervals for determining the directions and velocity. For the kinetic simulation, we also investigated in detail how the errors in the inferred gradient directions from the unmodified Shi et al. method (using the unperturbed gradient) depended on the amplitude of the calibration errors. For an accuracy of 3 for the maximum gradient direction, the calibration errors could be as large as 3% of reconnection magnetic field, while for the same accuracy for the minimum gradient direction, the calibration errors could only be as large as 0.03% of the reconnection magnetic field. These results suggest that the maximum gradient direction can normally be determined by the unmodified Shi et al. method, while the modified method or some other method must be used to accurately determine the minimum gradient direction. The structure velocity was found with magnitude accurate to 2% and direction accurate to within 5%.

Denton, R.↗
DOE OSTI2020

Direct Observation of the Dynamics of Single-Cell Metabolic Activity during Microbial Diauxic Growth

Understanding how genetic information is realized as the behavior of individual cells is a long-term goal of biology but represents a significant technological challenge. In clonal microbial populations, variation in gene regulation is often interpreted as metabolic heterogeneity. This follows the central dogma of biology, in which information flows from DNA to RNA to protein and ultimately manifests as activity. At present, DNA and RNA can be characterized in single cells, but the abundance and activity of proteins cannot. Inferences about metabolic activity usually therefore rely on the assumption that transcription reflects activity. By tracking the atoms from which they build their biomass, we make direct observations of growth rate and substrate specialization in individual cells throughout a period of growth in a changing environment. This approach allows the flow of information from DNA to be constrained from the distal end of the regulatory cascade and will become an essential tool in the rapidly advancing field of single-cell metabolism.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Large Evolutionary Rate Heterogeneity among and within HIV-1 Subtypes and CRFs

HIV-1 is a fast-evolving, genetically diverse virus presently classified into several groups and subtypes. The virus evolves rapidly because of an error-prone polymerase, high rates of recombination, and selection in response to the host immune system and clinical management of the infection. The rate of evolution is also influenced by the rate of virus spread in a population and nature of the outbreak, among other factors. HIV-1 evolution is thus driven by a range of complex genetic, social, and epidemiological factors that complicates disease management and prevention. Here, we quantify the evolutionary (substitution) rate heterogeneity among major HIV-1 subtypes and recombinants by analyzing the largest collection of HIV-1 genetic data spanning the widest possible geographical (100 countries) and temporal (1981–2019) spread. We show that HIV-1 substitution rates vary substantially, sometimes by several folds, both across the virus genome and between major subtypes and recombinants, but also within a subtype. Across subtypes, rates ranged 3.5-fold from 1.34 × 10−3 to 4.72 × 10−3 in env and 2.3-fold from 0.95 × 10−3 to 2.18 × 10−3 substitutions site−1 year−1 in pol. Within the subtype, 3-fold rate variation was observed in env in different human populations. It is possible that HIV-1 lineages in different parts of the world are operating under different selection pressures leading to substantial rate heterogeneity within and between subtypes. We further highlight how such rate heterogeneity can complicate HIV-1 phylodynamic studies, specifically, inferences on epidemiological linkage of transmission clusters based on genetic distance or phylogenetic data, and can mislead estimates about the timing of HIV-1 lineages.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1977

A global thermospheric model based on mass spectrometer and incoherent scatter data MSIS. I - N2 density and temperature

Measurements of neutral nitrogen density from mass spectrometers on five satellites (AE-B, Ogo 6, San Marco 3, Aeros A, and AE-C) and neutral temperatures inferred from incoherent scatter measurements at four ground stations are combined to produce a model of thermospheric neutral temperatures and nitrogen densities similar to the Ogo 6 empirical model (Hedin et al., 1974). This global model is designated MSIS (mass spectrometer and incoherent scatter). The global average temperature, the annual temperature variation, lower bound density, and lower bound temperature are discussed. The data set covers the time period from the end of 1965 to mid-1975 and also a wide range of solar activities. Diurnal and semidiurnal variations in lower bound density and temperature are considered, as is magnetic activity.

Hedin, A. E.↗
NASA NTRS1982

Vaporization in Comets; outbursts from Comet Schwassmann-Wachmann 1

Revised estimates are presented which show that the total mass and kinetic energy in a typical Comet P/Schassmann-Wachmann 1 outburst are lower than previously estimated, and that this mass is comparable to the mass of gas vaporized, as inferred from recent observations of CO(+) in this comet. The storage of energy suggested by many authors is therefore not neccessary. A simple equilibrium vaporization of CO2 or CO which is suddenly exposed, on a nucleus that is otherwise primarily composed of H2O, is proposed. Under these conditions, calculations of the variation of vaporization with rotational phase indicate that the mechanism can quantitatively produce outbursts of the size observed.

Cowan, J. J.↗
NASA NTRS1986

Geomorphic evidence for the distribution of ground ice on Mars

High-resolution Viking orbiter images show evidenced for quasi-viscous relaxation of topography. The relaxation is believed to be due to creep deformation of ice in near-surface materials. The global distribution of the inferred ground ice shows a pronounced latitudinal dependence. The equatorial regions of Mars appear to be ice-poor, while the heavily cratered terrain poleward of + or - 30 deg latitude appears to be ice-rich. The style of creep poleward of + or - 30 deg varies with latitude, possibly due to variations in ice rheology with temperature. The distribution suggests that ice at low latitudes, which is not in equilibrium with the present atmosphere, has been lost via sublimation and diffusion through the regolith, thereby causing a net poleward transport of ice over martian history.

Squyres, S. W.↗
NASA NTRS1988

Step-wise extinctions at the Cretaceous-Tertiary boundary and their climatic implications

A comparative study of planktonic foraminifera and radiolarian assemblages from the Cretaceous-Tertiary (K-T) boundary section of the Beloc Formation in the southern Peninsula of Haiti, and the lowermost Danian sequence of the Micara Formation in southern Cuba reveals a remarkable pattern of step-wise extinctions. This pattern is consistent in both places despite the widely different lithologies of the two formations. Because of a step-wise extinction and the delayed disappearance of taxa known to be more representative of cooler water realms, it is inferred that a cooling trend which characterized the close of the Maastrichtian and the onset of the Tertiary had the major adverse effect on the existing biota. Although repetitive lithologic and faunal fluctuations throughout the Maastrichtian sediments found at Deep Sea Drilling Project (DSDP) site 146/149 in the Caribbean Sea indicate variations reminiscent of known climatically induced cycles in the Cenozoic, rapid biotic succession appears to have taken place during a crisis period of a duration greater than 2 mission years. Widespread and abundant volcanic activities recorded in the Caribbean area during the crisis period gives further credence to earlier contention that intense volcanism may have played a major role in exhacerbating pre-existing climatic conditions during that time.

Maurrasse, Florentin J-M. R.↗