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At least 775 records · Page 43

Kernel learning backward SDE filter for data assimilation

In this paper, we develop a kernel learning backward SDE filter method to estimate the state of a stochastic dynamical system based on its partial noisy observations. A system of forward backward stochastic differential equations is used to propagate the state of the target dynamical model, and Bayesian inference is applied to incorporate the observational information. Further, to characterize the dynamical model in the entire state space, we introduce a kernel learning method to learn a continuous global approximation for the conditional probability density function of the target state by using discrete approximated density values as training data. Numerical experiments demonstrate that the kernel learning backward SDE is highly effective.

97 MATHEMATICS AND COMPUTING↗

A Privacy-Preserving Distributed Control of Optimal Power Flow

Here, we consider a distributed optimal power flow formulated as an optimization problem that maximizes a nondifferentiable concave function. Solving such a problem by the existing distributed algorithms can lead to data privacy issues because the solution information exchanged within the algorithms can be utilized by an adversary to infer the data. To preserve data privacy, in this paper we propose a differentially private projected subgradient (DP-PS) algorithm that includes a solution encryption step. We show that a sequence generated by DP-PS converges in expectation, in probability, and with probability 1. Moreover, we show that the rate of convergence in expectation is affected by a target privacy level of DP-PS chosen by the user. We conduct numerical experiments that demonstrate the convergence and data privacy preservation of DP-PS.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Technology Summary DNATRAX

DNATrax (DNA Tagged Reagents for Aerosol eXperiments) was developed to provide a safe simulant for understanding the transport and dispersion of pathogens. Specifically, it was developed as a safe surrogate for the Bacillus anthrasis spore bioagent, since most naturally occurring spores are not safe for public release. As DNA-tagged sugar particles, DNATrax aerosols are safe for public release. Scientists can add unique DNA barcode sequences to the sugar particles to produce a wide variety of test particles that can be easily differentiated, making it possible to release and test them simultaneously. The unique barcodes also eliminate the need to conduct decontamination between tests, dramatically reducing the cost and time to run experiments. Additionally, the surrogate offers a high-sensitivity detection method to understand key public health issues. We conducted both lab-based and largescale field studies using DNATrax to validate its capabilities for use as a pathogen surrogate. We have demonstrated the ability to produce DNATrax in a range of sizes, adjusting the microparticles to simulate different sized pathogens with ability to create unique sequences of DNA bases, enabling them to create a nearly unlimited variety of test particles.

59 BASIC BIOLOGICAL SCIENCES↗

An Integral Experiment on Polyethylene Using Radiative Capture in Indium Foils in a High Flux D-D Neutron Generator

In this work, we report here the results of a measurement of the scattered versus unscattered neutron fluence on polyethylene determined via neutron activation of multiple natural indium foils from a deuterium-deuterium (D-D) neutron generator. The neutrons were produced by the High Flux Neutron Generator (HFNG) at the University of California, Berkeley, a specially designed source to maximize neutron flux on a sample while minimizing the total neutron yield. During the experiment, approximately 10 8 n/s were produced with the energies at the indium foils ranging from 2.2 to 2.8 MeV. Both the angle-integrated and the partial angle differential results are consistent with the predictions of the Monte Carlo N-Particle Transport (MCNP) code, using ENDF/B-VII.1. This supports shielding calculations in the fast energy region with high-density polyethylene.

42 ENGINEERING↗

Enhancing nuclear data validation analysis by using machine learning

In this work, we demonstrate how machine learning (ML) techniques can be used as an auxiliary tool for nuclear data validation analysis. The output of the ML analysis can inform evaluators and validators on the quality, or lack thereof, of specific nuclear data and benchmark experiments with respect to simulating these experimental benchmark values. To this end, measured and simulated effective neutron multiplication factors, k eff , of 875 selected ICSBEP critical assemblies and the latter's sensitivities with respect to nuclear data as well as benchmarks' features (e.g., material nuclide, core geometry) are used as input for a random forest (RF) regression model. The RF is used to encode the complex inter-dependencies between thousands of nuclear data features (i.e., sensitivity profiles and aspects describing the measurements) and 875 simulated and experimental k eff values in order to understand what nuclear data features are most informative for predicting bias. The complexity of relationships and high-dimensional space is difficult-to-impossible to search fully using simply expert judgment. As a first proof-of-concept—step, it is demonstrated that this technique is able to correctly trace large discrepancies between simulated and experimental k eff back to fabricated shortcomings in nuclear data that were perturbed to simulated k eff values. In a second, real-case scenario, step, the RF algorithm is used to validate the ENDF/B-VIII.0 library in comparison to ENDF/B-VII.1 nuclear data. One case is showcased where the chosen ML algorithms highlighted nuclear data (the 19 F(n,inl) cross section from 0.4–0.9 MeV) that are shown to be problematic by comparing them to associated differential experimental data and nuclear data from other libraries. In addition to that, it is shown that the RF results point towards poor benchmark experiments and associated underestimated uncertainties (e.g., the PU-SOL-THERM-028 series). However, using the RF algorithm for validating nuclear data with respect to k eff is currently limited to pinpointing groups of questionable nuclear data due to the inherent correlations between features introduced by the nuclear data themselves and how k eff is simulated. Due to this, we recommend that the ML methods presented be used to augment—rather than replace—the expert knowledge of evaluators and validators.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Computing Nonequilibrium Responses with Score-Shifted Stochastic Differential Equations

Using equilibrium fluctuations to understand the response of a physical system to an externally imposed perturbation is the basis for linear response theory, which is widely used to interpret experiments and shed light on microscopic dynamics. For nonequilibrium systems, perturbations cannot be interpreted simply by monitoring fluctuations in a conjugate observable and general response results rely on path ensemble averaging. Furthermore, these techniques do not apply to perturbations that affect the diffusion tensor in a stochastic system. Here, we introduce an “effective” physical process that represents the diffusion perturbed dynamics and enables accurate calculations of responses to a change in the diffusion. Interestingly, the effective dynamics contain an additional drift involving the instantaneous “score” of the system, and we leverage score matching algorithms to carry out nonequilibrium response calculations on systems for which the exact stationary distribution is unknown.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Differential Absorption Lidar (DIAL) Measurements from Air and Space

Differential absorption lidar (DIAL) systems have been used for the measurement of ozone, water vapor, and aerosols from aircraft platforms for over 18 years, yielding new insights into atmospheric chemistry, composition, and dynamics in large-scale field experiments conducted all over the world. The successful deployment of the lidar in-space technology experiment (LITE) in September 1994 demonstrated that space-based lidars can also collect valuable information on the global atmosphere. This paper reviews some of the contributions of the NASA Langley Research Center's airborne ozone and water vapor DIAL systems and space-based LITE system to the understanding of the atmosphere and discusses the feasibility and advantages of putting DIAL systems in space for routine atmospheric measurements of ozone and/or water vapor and aerosols and clouds. The technology and applications of the differential absorption lidar (DIAL) technique have progressed significantly since the first DIAL measurements of Schotland, and airborne DIAL measurements of ozone and water vapor are frequently being made in a wide range of field experiments. In addition, plans are underway to develop DIAL systems for use on satellites for continuous global measurements. This paper will highlight the history of airborne lidar and DIAL systems, summarize the major accomplishments of the NASA Langley DIAL program, and discuss specifications and goals for DIAL systems in space.

Browell, E. V.↗

Study of Z boson plus jets events using variables sensitive to double-parton scattering in pp collisions at 13 TeV

Double-parton scattering is investigated using events with a Z boson and jets. The Z boson is reconstructed using only the dimuon channel. The measurements are performed with proton-proton collision data recorded by the CMS experiment at the LHC at s√ = 13 TeV, corresponding to an integrated luminosity of 35.9 fb -1 collected in the year 2016. Differential cross sections of Z+ ≥1 jet and Z+ ≥2 jets are measured with transverse momentum of the jets above 20 GeV and pseudorapidity |η| < 2.4. Several distributions with sensitivity to double-parton scattering effects are measured as functions of the angle and the transverse momentum imbalance between the Z boson and the jets. The measured distributions are compared with predictions from several event generators with different hadronization models and different parameter settings for multiparton interactions. The measured distributions show a dependence on the hadronization and multiparton interaction simulation parameters, and are important input for future improvements of the simulations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Phase-field model of precipitation processes with coherency loss

A phase-field model is proposed to simulate coherency loss coupled with microstructure evolution. A special field variable is employed to describe the degree of coherency loss of each particle and its evolution is governed by a Ginzburg-Landau type kinetic equation. For the sake of computational efficiency, a flood-fill algorithm is introduced that can drastically reduce the required number of field variables, which allows the model to efficiently simulate a large number of particles sufficient for characterizing their statistical features during Ostwald ripening. The model can incorporate size dependence of coherency loss, metastability of coherent particles, and effectively incorporate the underlying mechanisms of coherency loss by introducing a so-called differential energy criterion. The model is applied to simulate coarsening of Al 3 Sc precipitates in aluminum alloy and comprehensively compared with experiments. Our results clearly show how the particle size distribution is changed during coherency loss and affects the coarsening rate.

36 MATERIALS SCIENCE↗

Improved genome editing by an engineered CRISPR-Cas12a

CRISPR-Cas12a is an RNA-guided, programmable genome editing enzyme found within bacterial adaptive immune pathways. Unlike CRISPR-Cas9, Cas12a uses only a single catalytic site to both cleave target double-stranded DNA (dsDNA) (cis-activity) and indiscriminately degrade single-stranded DNA (ssDNA) (trans-activity). To investigate how the relative potency of cis- versus trans-DNase activity affects Cas12a-mediated genome editing, we first used structure-guided engineering to generate variants of Lachnospiraceae bacterium Cas12a that selectively disrupt trans-activity. The resulting engineered mutant with the biggest differential between cis - and trans -DNase activity in vitro showed minimal genome editing activity in human cells, motivating a second set of experiments using directed evolution to generate additional mutants with robust genome editing activity. Notably, these engineered and evolved mutants had enhanced ability to induce homology-directed repair (HDR) editing by 2–18-fold compared to wild-type Cas12a when using HDR donors containing mismatches with crRNA at the PAM-distal region. Finally, a site-specific reversion mutation produced improved Cas12a (iCas12a) variants with superior genome editing efficiency at genomic sites that are difficult to edit using wild-type Cas12a. This strategy establishes a pipeline for creating improved genome editing tools by combining structural insights with randomization and selection. The available structures of other CRISPR-Cas enzymes will enable this strategy to be applied to improve the efficacy of other genome-editing proteins.

59 BASIC BIOLOGICAL SCIENCES↗

Climatic imprint on interfacially-controlled platinum-palladium resources

Abstract Iron oxide-rich laterites, soils, and regolith formed from the weathering of ultramafic rocks represent untapped unconventional resources for the critical minerals platinum and palladium, but the fundamental surficial geochemistry of these elements remains poorly understood. Depletion of Pd relative to Pt occurs in some weathering zones in semi-arid climates. The accepted model attributes this platinum-palladium chemical fractionation to preferential complexation of Pd by dissolved chloride. However, similar fractionation is not observed in laterites of humid equatorial regions despite substantial wet deposition of chloride. The established mechanistic model for Pt and Pd behavior during weathering thus inaccurately predicts the distribution of these critical minerals in many settings, hindering global resource assessment. We show through mineral-fluid partitioning experiments coupled to element-specific spectroscopy that this canonical explanation for platinum-palladium fractionation is invalid: chloride complexation does not differentially mobilize Pd versus Pt. Instead, mineral-specific interfacial reactions control Pd and Pt accumulation. Modeling of platinum-palladium fractionation in representative weathering zone profiles demonstrates sub-equal retention in goethite-rich settings and Pd depletion in hematite-rich zones, accurately predicting trends observed in soils and laterites. Iron oxide mineralogy, reflecting modern and past regional climate conditions, is likely the primary determinant of Pt and Pd endowment in weathering zone resources. This new model for Pt and Pd mobilization and accumulation behavior provides a mechanistic foundation for exploration and recovery of platinum group elements from novel ultramafic regolith deposits.

58 GEOSCIENCES↗

Population Genomic Analyses Reveal Connectivity via Human-Mediated Transport across Populus Plantations in North America and an Undescribed Subpopulation of Sphaerulina musiva

Domestication of plant species has affected the evolutionary dynamics of plant pathogens in agriculture and forestry. A model system for studying the consequences of plant domestication on the evolution of an emergent plant disease is the fungal pathogen Sphaerulina musiva. This ascomycete causes leaf spot and stem canker disease of Populus spp. and their hybrids. A population genomics approach was used to determine the degree of population structure and evidence for selection on the North American population of S. musiva. In total, 122 samples of the fungus were genotyped identifying 120,016 single-nucleotide polymorphisms after quality filtering. In North America, S. musiva has low to moderate degrees of differentiation among locations. Three main genetic clusters were detected: southeastern United States, midwestern United States and Canada, and a new British Columbia cluster (BC2). Population genomics suggest that BC2 is a novel genetic cluster from central British Columbia, clearly differentiated from previously reported S. musiva from coastal British Columbia, and the product of a single migration event. Phenotypic measurements from greenhouse experiments indicate lower aggressiveness of BC2 on Populus trichocarpa. In summary, S. musiva has geographic structure across broad regions indicative of gene flow among clusters. The interconnectedness of the North American S. musiva populations across large geographic distances further supports the hypothesis of anthropogenic-facilitated transport of the pathogen.

Biochemistry & Molecular Biology↗

Sensitivity of Au + Au collisions to the symmetric nuclear matter equation of state at 2–5 nuclear saturation densities

We demonstrate that proton and pion flow measurements in heavy-ion collisions at incident energies ranging from 1 to 20 GeV per nucleon in the fixed target frame can be used for an accurate determination of the symmetric nuclear matter equation of state at baryon densities equal 2–4 times nuclear saturation density n 0 . We simulate Au + Au collisions at these energies using a hadronic transport model with an adjustable vector mean-field potential dependent on baryon density n B . Here, we show that the mean field can be parametrized to reproduce a given density dependence of the speed of sound at zero temperature $c$$^{2}_{s}$ (n B , T = 0), which we vary independently in multiple density intervals to probe the differential sensitivity of heavy-ion observables to the equation of state at these specific densities. Recent flow data from the STAR experiment at the center-of-mass energies √ s NN = {3.0, 4.5} GeV can be described by our model, and a Bayesian analysis of these data indicates a hard equation of state at n B ϵ (2, 3)n 0 and a possible phase transition at n B ϵ (3, 4)n 0 . More data at √ s NN = 2–5 GeV, as well as a more thorough analysis of the model systematic uncertainties will be necessary for a more precise conclusion.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Measurement of the inclusive $t\bar{t}$ production cross section in the lepton + jets channel in $pp$ collisions at $\sqrt{s}$ = 7 TeV with the ATLAS detector using support vector machines

A measurement of the top quark pair-production cross section in the lepton + jets decay channel is presented. It is based on 4.6 fb -1 of $\sqrt{s}$ = 7 TeV pp collision data collected during 2011 by the ATLAS experiment at the CERN Large Hadron Collider. A three-class, multidimensional event classifier based on support vector machines is used to differentiate $t\bar{t}$ events from backgrounds. The $t\bar{t}$ production cross section is found to be σ $t\bar{t}$ = 168.5 ± 0.7(stat)$^{+6.2}_{-5.9}$(syst)$^{+ 3.4}_{-3.2}$(lumi) pb. In conclusion, the result is consistent with the Standard Model prediction based on QCD calculations at next-to-next-to-leading order.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Discovering Dark Matter with the MUonE Experiment

The MUonE experiment aims to extract the hadronic contribution to the muon anomalous magnetic moment from a precise measurement of the muon-electron differential scattering cross section. We show that MUonE can also discover thermal relic dark matter using only its nominal experimental setup. Our search strategy is sensitive to models of dark matter in which pairs of pseudo-Dirac fermions are produced in muon-nucleus scattering in the target, and the heavier state decays semivisibly to yield dilepton pairs displaced downstream from the interaction point. This approach can probe sub-GeV thermal-relic dark matter whose cosmological abundance is governed by the same model parameters that set the MUonE signal strength. Furthermore, our results show that the downstream electron calorimeter plays a key role in rejecting backgrounds for this search, thereby providing strong motivation for the MUonE to keep this component in the final experimental design. Published by the American Physical Society 2025

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Development of dual‐inducible duet‐expression vectors for tunable gene expression control and CRISPR interference‐based gene repression in Pseudomonas putida KT2440

Summary The development of P. putida as an industrial host requires a sophisticated molecular toolbox for strain improvement, including vectors for gene expression and repression. To augment existing expression plasmids for metabolic engineering, we developed a series of dual‐inducible duet‐expression vectors for P. putida KT2440. A number of inducible promoters (P lac , P tac , P tetR/tetA and P bad ) were used in different combinations to differentially regulate the expression of individual genes. Protein expression was evaluated by measuring the fluorescence of reporter proteins (GFP and RFP). Our experiments demonstrated the use of compatible plasmids, a useful approach to coexpress multiple genes in P. putida KT2440. These duet vectors were modified to generate a fully inducible CRISPR interference system using two catalytically inactive Cas9 variants from S. pasteurianus (dCas9) and S. pyogenes (spdCas9). The utility of developed CRISPRi system(s) was demonstrated by repressing the expression of nine conditionally essential genes, resulting in growth impairment and prolonged lag phase for P. putida KT2440 growth on glucose. Furthermore, the system was shown to be tightly regulated, tunable and to provide a simple way to identify essential genes with an observable phenotype.

59 BASIC BIOLOGICAL SCIENCES↗

Integrating deep neural networks with full-waveform inversion: Reparameterization, regularization, and uncertainty quantification

Full-waveform inversion (FWI) is an accurate imaging approach for modeling the velocity structure by minimizing the misfit between recorded and predicted seismic waveforms. However, the strong nonlinearity of FWI resulting from fitting oscillatory waveforms can trap the optimization in local minima. We have adopted a neural-network-based full-waveform inversion (NNFWI) method that integrates deep neural networks with FWI by representing the velocity model with a generative neural network. Neural networks can naturally introduce spatial correlations as regularization to the generated velocity model, which suppresses noise in the gradients and mitigates local minima. Furthermore, the velocity model generated by neural networks is input to the same partial differential equation (PDE) solvers used in conventional FWI. The gradients of the neural networks and PDEs are calculated using automatic differentiation, which back propagates gradients through the acoustic PDEs and neural network layers to update the weights of the generative neural network. Experiments on 1D velocity models, the Marmousi model, and the 2004 BP model determine that NNFWI can mitigate local minima, especially for imaging high-contrast features such as salt bodies, and it significantly improves the inversion in the presence of noise. Adding dropout layers to the neural network model also allows analyzing the uncertainty of the inversion results through Monte Carlo dropout. NNFWI opens a new pathway to combine deep learning and FWI for exploiting the characteristics of deep neural networks and the high accuracy of PDE solvers. Because NNFWI does not require extra training data and optimization loops, it provides an attractive and straightforward alternative to conventional FWI.

58 GEOSCIENCES↗