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At least 775 records · Page 43
All sourcesNASA NTRSDOE OSTI
NASA NTRS2000

Analysis of the Meteorology Associated with the 1997 NASA Glenn Twin Otter Icing Events

This part of the document contains an analysis of the meteorology associated with the premier icing encounters from the January-March 1997 NASA Twin Otter dataset. The purpose of this analysis is to provide a meteorological context for the aircraft data collected during these flights. For each case, the following data elements are presented: (1) A detailed discussion of the Twin Otter encounter, including locations, liquid water contents, temperatures and microphysical makeup of the clouds and precipitation aloft, (2) Upper-air charts, providing hand-analyzed locations of lows, troughs, ridges, saturated/unsaturated air, temperatures, warm/cold advection, and jet streams, (3) Balloon-borne soundings, providing vertical profiles of temperature, moisture and winds, (4) Infrared satellite data, providing cloud locations and cloud top temperature, (5) 3-hourly surface charts, providing hand-analyzed locations of lows, highs, fronts, precipitation (including type) and cloud cover, (6) Hourly plots of icing pilot reports, providing the icing intensity, icing type, icing altitudes and aircraft type, (7) Hourly, regional radar mosaics, providing fine resolution of the locations of precipitation (including intensity and type), pilot reports of icing (including intensity and type), surface observations of precipitation type and Twin Otter tracks for a one hour window centered on the time of the radar data, and (8) Plots of data from individual NEXRAD radars at times and elevation angles that have been matched to Twin Otter flight locations. Outages occurred in nearly every dataset at some point. All relevant data that was available is presented here. All times are in UTC and all heights are in feet above mean sea level (MSL).

Bernstein, Ben C.↗
NASA NTRS1985

SPAR improved structural-fluid dynamic analysis capability

The results of a study whose objective was to improve the operation of the SPAR computer code by improving efficiency, user features, and documentation is presented. Additional capability was added to the SPAR arithmetic utility system, including trigonometric functions, numerical integration, interpolation, and matrix combinations. Improvements were made in the EIG processor. A processor was created to compute and store principal stresses in table-format data sets. An additional capability was developed and incorporated into the plot processor which permits plotting directly from table-format data sets. Documentation of all these features is provided in the form of updates to the SPAR users manual.

Pearson, M. L.↗
NASA NTRS1992

STARBASE: Database software for the automated plate scanner

The Automated Plate Scanner (APS) of the University of Minnesota, a unique high speed 'flying spot' laser scanner, is currently being used to scan and digitize the 936 O and E plate pairs of the first epoch Palomar Sky Survey. The resultant database will be used to produce a catalog of approximately a billion stars and several million galaxies. The authors describe the ongoing development of a dedicated APS database management system which will be made available to the astronomical community via INTERNET. A specialized DBMS called STARBASE has been written to provide fast access to the hundreds of millions of images collected by the APS. This system provides an initial reduction mode for parameterizing APS images and classifying image types using a novel set of neural network image classifiers. A second analysis mode, which will be that commonly used by the general user, provides for searches of the database which may be constrained by any combination of physical and positional parameters. Through the use of pointer hash trees, the system has been optimized for extremely fast positional searches using either right ascension and declination on the sky or linear X and Y positions on the POSS field. In addition to fast data retrieval, the system provides a graphical interface for displaying scatter plots or histograms of the collected data. In addition, a specialized image display system is being developed to allow the user to view densitometric data for all objects classified as extended by the neural network system. Finally, STARBASE has a flexible programmable interface which allows other programs to access information in the database. This allows users to write applications suited to their particular needs to process APS data.

Odewahn, S. C.↗
DOE OSTI2023

SPRUCE Vegetation Phenology in Experimental Plots from Phenocam Imagery, 2015-2022

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2023, with start- and end-of-season phenological transition dates derived through the end of autumn 2022. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). This data set consists of three sets of data files: 3-day summary product files: One file for each camera and each ROI (i.e. vegetation type), characterizing vegetation color at a 3-day time step Contains 35 files in *.csv format inside a compressed (*.zip) file. Transition date file: Estimates “greenness rising” (spring) and “greenness falling” (autumn) transition dates derived from the smoothed daily green chromatic coordinate (GCC) values, for each camera and each ROI (i.e. vegetation type) Contains one file in *.csv format Snow flag files: Indicate days with snow on trees or snow on ground for each experimental enclosure Contains two files in *.csv format, one for snow on trees and one for snow on ground This data set consists of two sets of companion files: Accompanying HTML files show the 90th quantiles of the mean GCC plotted together with transition dates for each vegetation type and plot. Contains three files in HTML format, one for each vegetation type One additional file in HTML format with the transition dates plotted for each vegetation type, by year R files for processing Phenocam files and flags. Contains five files in R file (*.R) format in one compressed (*.zip) file User Note: All imagery is posted in near-real time to the PhenoCam Project web page (http://phenocam.sr.unh.edu/), where it is publicly available. Scroll to “spruce” in the Gallery or link directly to the 29 SPRUCE cameras at https://tinyurl.com/y7z5mau7. The data reported here are based on the complete camera record from SPRUCE and supersedes the previously released phenocam datasets (see Related Data Sets). The estimated transition dates for previously released datasets may differ slightly (in most cases, by ±3 days or less), because following standard PhenoCam processing protocols (Richardson et al. 2018, Scientific Data), smoothing and interpolation, outlier removal, and transition date estimation are always conducted using the full data record.

SPRUCE Experiment, Marcell Experimental Forest, Sp↗
NASA NTRS1998

Remote Access to Earth Science Data by Content, Space and Time

This demo presents the combination on an http-based client/server application that facilitates internet access to Earth science data coupled with a Java applet GUI that allows the user to graphically select data based on spatial and temporal coverage plots and scientific parameters.

Data and Information System (EOSDIS) remote access↗
DOE OSTI2021

Contrasting Responses of Soil Inorganic Carbon to Afforestation in Acidic Versus Alkaline Soils

Afforestation is recommended as an effective approach for carbon sequestration and environmental benefits. However, it remains less clear, and sometimes controversial, regarding how afforestation may impact soil inorganic carbon (SIC), a crucial component of the ecosystem carbon pool. Here, using field data from 619 afforested plots and 163 control plots across northern China, we investigated the relative and absolute differences in SIC between afforested and corresponding control plots. Our results suggested that afforestation increased SIC in acidic soils, while decreased SIC in alkaline soils. Fitting a linear mixed model and further a structure equation model, we found that afforestation-induced soil pH change was the most significant factor regulating SIC responses. In particular, SIC was more sensitive to pH change in more arid areas, where both soil pH and SIC stocks were high. Other factors could indirectly affect SIC responses to afforestation through modulating soil pH and soil organic carbon (SOC) dynamics. Moreover, afforestation-induced SIC changes also varied considerably among different species of tree plantations and across different soil depths. Importantly, in plantations of Pinus sylvestris var. mongholica, Pinus tabuliformis, and Populus spp., changes in SIC caused by afforestation were even comparable to that in SOC. Overall, our findings provide a data-based understanding on the comprehensive soil carbon dynamics following afforestation and its underlying mechanisms. With the increased use of afforestation and reforestation as nature-based solutions to climate change, their associated impacts on SIC need to be taken into account, especially in SIC-rich areas.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2004

Analysis of Upper Air, Ground and Remote Sensing Data For the ATLAS Field Campaign in San Juan, Puerto Rico

The Atlas San Juan Mission was conducted in February 2004 with the main objectives of observing the Urban Heat Island of San Juan, providing high resolution data of the land use for El Yunque Rain Forest and for calibrating remote sensors. The mission was coordinated with NASA staff members at Marshall, Stennis, Goddard, and Glenn. The Airborne Thermal and Land Applications Sensor (ATLAS) from NASA/Stennis, that operates in the visual and IR bands, was used as the main sensor and was flown over Puerto Rico in a Lear 23 jet plane. To support the data gathering effort by the ATLAS sensor, remote sensing observations and upper air soundings were conducted along with the deployment of a number of ground based weather stations and temperature sensors. This presentation focuses in the analysis of this complementary data for the Atlas San Juan Mission. Upper air data show that during the days of the mission the Caribbean mid and high atmospheres were relatively dry and highly stable reflecting positive surface lifted index, a necessary condition to conduct this suborbital campaign. Surface wind patterns at levels below 850mb were dominated by the easterly trades, while the jet stream at the edge of the troposphere dominated the westerly wind at levels above 500mb. The jet stream remained at high latitudes reducing the possibility of fronts. In consequence, only 8.4 mm of precipitation were reported during the entire mission. Observation of soundings located about 150 km apart reflected minimum variations of the boundary layer across the island for levels below 850 meters and a uniform atmosphere for higher levels. The weather stations and the temperature sensors were placed at strategic locations to observe variations across the urban and rural landscapes. Time series plot of the stations' data show that heavily urbanized commercial areas have higher air temperatures than urban and suburban residential areas, and much higher temperatures than rural areas. Temperature differences [dT(U-R)] were obtained by subtracting the values of several stations from a reference urban station, located in the commercial area of San Juan. These time series show that the UHI peaks during the morning between 10:00am and noon to an average of 4.5 C, a temporal pattern not previously observed in similar studies for continental cities. It is also observed a high variability of the UHI with the precipitation patterns even for short events. These results may be a reflection of a large land use density by low level buildings with an apparent absence of significant heat storage effects in the urban areas, and the importance of the surrounding soil and vegetation moisture in controlling the urban tropical climate. The ATLAS data was used to determine albedo and surface temperature patterns on a 10m scale for the study area. These data were used to calibrate the spatial distribution of the surface temperature when using remote sensing images from MODIS (Moderate Resolution Imaging Spectroradiometer). Surface temperatures were estimated using the land surface temperature product MOD11_L2 distributed by the Land Process Distributed Active Archive Center (LP DAAC). These results show the maximum, minimum and average temperatures in San Juan and in the entire Island at a resolution of 1 km. The information retrieved from MODIS for land surface temperatures reflected similar temporal and spatial variations as the weather stations and ATLAS measurements with a highest absolute offset of about 5 C due to the differences between surface and air temperatures.

Gonzalez, J. E.↗
NASA NTRS2005

Analysis of Upper Air, Ground and Remote Sensing Data for the ATLAS Field Campaign in San Juan, Puerto Rico

The Atlas San Juan Mission was conducted in February 2004 with the main objectives of observing the Urban Heat Island of San Juan, providing high resolution data of the land use for El Yunque Rain Forest and for calibrating remote sensors. The mission was coordinated with NASA staff members at Marsha& Stennis, Goddard, and Glenn. The Airborne Thermal and Land Applications Sensor (ATLAS) from NASA/Stennis, that operates in the visual and IR bands, was used as the main sensor and was flown over Puerto Rico in a Lear 23 jet plane. To support the data gathering effort by the ATLAS sensor, remote sensing observations and upper air soundings were conducted along with the deployment of a number of ground based weather stations and temperature sensors. This presentation focuses in the analysis of this complementary data for the Atlas San Juan Mission. Upper air data show that during the days of the mission the Caribbean mid and high atmospheres were relatively dry and highly stable reflecting positive surface lifted index, a necessary condition to conduct this suborbital campaign. Surface wind patterns at levels below 850mb were dominated by the easterly trades, while the jet stream at the edge of the troposphere dominated the westerly wind at levels above 500mb. The jet stream remained at high latitudes reducing the possibility of fronts. In consequence, only 8.4 mm of precipitation were reported during the entire mission. Observation of soundings located about 150 km apart reflected minimum variations of the boundary layer across the Island for levels below 850 meters and a uniform atmosphere for higher levels. The weather stations and the temperature sensors were placed at strategic locations to observe variations across the urban and rural landscapes. Time series plot of the stations' data show that heavily urbanized commercial areas have higher air temperatures than urban and suburban residential areas, and much higher temperatures than rural areas. Temperature differences [dT(U-R)] were obtained by subtracting the values of several stations h m a reference urban station, located m the commercial area of San Juan. These time series show that the UHI peaks during the morning between 10:00am and noon to an average of 4.5 C, a temporal pattern not previously observed in similar studies for continental cities. It is also observed a high variability of the UHI with the precipitation patterns even for short events. These results may be a reflection of a large land use density by low level buildings with an apparent absence of significant heat storage effects in the urban areas, and the importance of the surrounding soil and vegetation moisture in controlling the urban tropical climate. The ATLAS data was used to determine albedo and surface temperature patterns on a 10m scale for the study area. These data were used to calibrate the spatial distribution of the surface temperature when using remote sensing images from MODIS (Moderate Resolution Imaging Spectradiometer). Surface temperatures were estimated using the land surface temperature product MODII-L2 distributed by the Land Process Distributed Active Archive Center(LP DAAC). These results show the maximum, minimum and average temperatures in San Juan and in the entire Island at a resolution of 1 km. The information retrieved from MODIS for land surface temperatures reflected similar temporal and spatial variations as the weather stations and ATLAS measurements with a highest absolute offset of about 5 C due to the differences between surface and air temperatures.

Gonzalez, Jorge E.↗
DOE OSTI2024

SPRUCE Vegetation Phenology in Experimental Plots from Phenocam Imagery, 2015-2023

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2024, with start- and end-of-season phenological transition dates derived through the end of autumn 2023. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). This data set consists of three sets of data files: (1) 3-day summary product files: One file for each camera and each ROI (i.e. vegetation type), characterizing vegetation color at a 3-day time step • Contains 36 files in *.csv format inside a compressed (*.zip) file. (2) Transition date file: Estimates “greenness rising” (spring) and “greenness falling” (autumn) transition dates derived from the smoothed daily green chromatic coordinate (GCC) values, for each camera and each ROI (i.e. vegetation type) • Contains one file in *.csv format (3) Snow flag files: Indicate days with snow on trees or snow on ground for each experimental enclosure • Contains two files in *.csv format, one for snow on trees and one for snow on ground This data set consists of two sets of companion files: (1) Accompanying HTML files show the 90th quantiles of the mean GCC plotted together with transition dates for each vegetation type and plot. • Contains three files in HTML format, one for each vegetation type • One additional file in HTML format with the transition dates plotted for each vegetation type, by year (2) R files for processing Phenocam files and flags. • Contains five files in R file (*.R) format in one compressed (*.zip) file User Note: All imagery is posted in near-real time to the PhenoCam Project web page (http://phenocam.sr.unh.edu/), where it is publicly available. Scroll to “spruce” in the Gallery or link directly to the 29 SPRUCE cameras at https://tinyurl.com/sprucecams. The data reported here are based on the complete camera record from SPRUCE and supersedes the previously released data inclusive of the 2015-2022 data (see Related Data Sets). The estimated transition dates for previously released datasets may differ slightly (in most cases, by ±3 days or less), because following standard PhenoCam processing protocols (Richardson et al. 2018, Scientific Data), smoothing and interpolation, outlier removal, and transition date estimation are always conducted using the full data record.

Spruce and Peatland Responses Under Changing Envir↗
DOE OSTI2025

Designing a User Interface for Real-Time Magnetometer Data Acquisition

The Matter-wave Atomic Gradiometer Interferometric Sensor (MAGIS-100) is a next-generation quantum sensor designed to search for ultralight dark matter and explore new frontiers in quantum mechanics. Due to the experiment s sensitivity to magnetic interference, a magnetometer trolley system was developed to scan magnetic fields along a vacuum tube. Interacting with the system required command-line inputs, creating usability challenges. To improve accessibility and streamline data acquisition, I developed a graphical user interface (GUI) using Python and the customtkinter library. The GUI supports real-time data display, state/mode switching, command execution, and CSV file management. I collaborated with another intern to integrate data visualization features into the GUI, allowing users to generate 3D plots of post-acquisition magnetic field data. In the future, I aim to fix the real-time plotting feature as it results in an unresponsive GUI.

Mendez, Milagros [DuPage Coll.]↗
DOE OSTI2025

Designing a User Interface for Real-Time Magnetometer Data Acquisition

The Matter-wave Atomic Gradiometer Interferometric Sensor (MAGIS-100) is a next-generation quantum sensor designed to search for ultralight dark matter and explore new frontiers in quantum mechanics. Due to the experiment’s sensitivity to magnetic interference, a magnetometer trolley system was developed to scan magnetic fields along a vacuum tube. Interacting with the system required command-line inputs, creating usability challenges. To improve accessibility and streamline data acquisition, I developed a graphical user interface (GUI) using Python and the customtkinter library. The GUI supports real-time data display, state/mode switching, command execution, and CSV file management. I collaborated with another intern to integrate data visualization features into the GUI, allowing users to generate 3D plots of post-acquisition magnetic field data. In the future, I aim to fix the real-time plotting feature as it results in an unresponsive GUI.

Mendez, Milagros [DuPage Coll.]↗
DOE OSTI2025

SPRUCE Vegetation Phenology in Experimental Plots from PhenoCam Imagery, 2015-2024

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2025 (2015-08-24 to 2025-03-31), with start- and end-of-season phenological transition dates derived through the end of autumn 2024. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). This data set consists of three sets of data files: (1) 3-day summary product files: One file for each camera and each ROI (i.e. vegetation type), characterizing vegetation color at a 3-day time step. • Contains 36 files in *.csv format inside a compressed (*.zip) file. (2) Transition date file: Estimates “greenness rising” (spring) and “greenness falling” (autumn) transition dates derived from the smoothed daily green chromatic coordinate (GCC) values, for each camera and each ROI (i.e., vegetation type). • Contains one file in *.csv format. (3) Snow flag files: Indicate days with snow on trees or snow on ground for each experimental enclosure. • Contains two files in *.csv format, one for snow on trees and one for snow on ground. This data set consists of two sets of companion files: (1) Accompanying HTML files show the 90th quantiles of the mean GCC plotted together with transition dates for each vegetation type and plot. • Contains three files in HTML format, one for each vegetation type. • One additional file in HTML format with the transition dates plotted for each vegetation type, by year. (2) R files for processing PhenoCam files and flags. • Contains five files in R file(*.R) format and the components of the phenocamr package (Version 1.1.4) used for calculating transition dates for 2015-2024. These are contained in a compressed (*.zip) file. User Note: All imagery is posted in near-real time to the PhenoCam Project web page (https://phenocam.nau.edu), where it is publicly available. Scroll to “spruce” in the Gallery or link directly to the 29 SPRUCE cameras at https://tinyurl.com/sprucecams. This data set is based on the complete camera record from SPRUCE and supersedes all previously released PhenoCam datasets (see Related Data Sets). The estimated transition dates for previously released datasets may differ slightly (in most cases, by ±3 days or less), because following standard PhenoCam processing protocols (Richardson et al. 2018, Scientific Data), smoothing and interpolation, outlier removal, and transition date estimation are always conducted using the full data record.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1981

The graphics and data acquisition software package

A software package was developed for use with micro and minicomputers, particularly the LSI-11/DPD-11 series. The package has a number of Fortran-callable subroutines which perform a variety of frequently needed tasks for biomedical applications. All routines are well documented, flexible, easy to use and modify, and require minimal programmer knowledge of peripheral hardware. The package is also economical of memory and CPU time. A single subroutine call can perform any one of the following functions: (1) plot an array of integer values from sampled A/D data, (2) plot an array of Y values versus an array of X values; (3) draw horizontal and/or vertical grid lines of selectable type; (4) annotate grid lines with user units; (5) get coordinates of user controlled crosshairs from the terminal for interactive graphics; (6) sample any analog channel with program selectable gain; (7) wait a specified time interval, and (8) perform random access I/O of one or more blocks of a sequential disk file. Several miscellaneous functions are also provided.

Crosier, W. G.↗
DOE OSTI2024

Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics (Blodgett, CA)

This dataset contains data on daily soil temperature, moisture and flux, and soil carbon stock and root biomass across a soil profile down to 100 cm depth at Blodgett Forest Research Station, CA, USA. These data were generated to determine if modeling of an experimental soil warming of 4C showed increased soil CO2 emissions and changes in bulk soil carbon stocks with depth consistent with field observations, as part of the study: Riley et al. (2025) Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics in Journal of Advances in Modeling Earth Systems. This research was performed within the framework of the TES Belowground Biogeochemistry SFA project, in particular association with a 1 m-deep experimental soil heating experiment at the University of California Blodgett Forest Research Station, California (120 ° 39′40′′W; 38 ° 54′43′′N). Continuous data were collected at the plot level, and bulk soil carbon and root biomass were sampled once a year from each plot from 0-100 cm, in 10 cm intervals. Measurements relevant to the current study include soil temperature and soil volumetric water content measured continuously at multiple depths in the top meter; fine root biomass and SOC stocks measured from annual soil cores. Soil flux was continuously monitored using a LI-8100 Automated CO2 Flux System in conjunction with the LI-8150 Multiplexer (Licor, Nebraska, USA). Soil flux was determined using SoilFluxPro software, with flux values showing an R² fit of less than 0.9 being excluded from the analysis. Data were collected from each paired plot (1-3): one control (C) and one heated (H).

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2014

Afterbody Heat Flux Measurements in the NASA Ames HFFAF Ballistic Range

In order to measure afterbody heat fluxes over a model in the ballistic range, the required modifications to a proven technique for measuring forebody heat fluxes are described. This involves the use of an extended helium gas plume to remove the glowing wake and the use of special high conductivity, high temperature capable graphite-filled plastic for the afterbody. The models and test conditions are described. Data in the form of plots of the surface temperature of the models are presented. Finally, experimental and computational fluid dynamic (CFD) heat flux data for forebody and afterbody heat fluxes are presented and compared. Data are presented for a 45 degree sphere-cone (with a projecting rear stud) at 2.70 km/s and for a sphere at 4.76 km/s. Both models were launched into 76 Torr of CO2 gas. The experimental forebody heat fluxes were within 1.5% of the CFD values. The experimental afterbody heat fluxes were within 1% of the CFD values for the sphere, but only 51% of the CFD values for the sphere-cone.

Bogdanoff, David W.↗
DOE OSTI2020

High precision control and deep learning-based corn stand counting algorithms for agricultural robot

This paper presents high precision control and deep learning-based corn stand counting algorithms for a low-cost, ultra-compact 3D printed and autonomous field robot for agricultural operations. Currently, plant traits, such as emergence rate, biomass, vigor, and stand counting, are measured manually. This is highly labor-intensive and prone to errors. The robot, termed TerraSentia, is designed to automate the measurement of plant traits for efficient phenotyping as an alternative to manual measurements. In this paper, we formulate a Nonlinear Moving Horizon Estimator that identifies key terrain parameters using onboard robot sensors and a learning-based Nonlinear Model Predictive Control that ensures high precision path tracking in the presence of unknown wheel-terrain interaction. Moreover, we develop a machine vision algorithm designed to enable an ultra-compact ground robot to count corn stands by driving through the fields autonomously. The algorithm leverages a deep network to detect corn plants in images, and a visual tracking model to re-identify detected objects at different time steps. We collected data from 53 corn plots in various fields for corn plants around 14 days after emergence (stage V3 - V4). The robot predictions have agreed well with the ground truth with C robot =1.02×C human -0.86 and a correlation coefficient R=0.96. The mean relative error given by the algorithm is -3.78%, and the standard deviation is 6.76%. These results indicate a first and significant step towards autonomous robot-based real-time phenotyping using low-cost, ultra-compact ground robots for corn and potentially other crops.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

$\mathrm{D}$ark$\mathrm{F}$lux: A new tool to analyze indirect-detection spectra of next-generation dark matter models

Here we present DarkFlux, a software tool designed to analyze indirect-detection signatures for next-generation models of dark matter (DM) with multiple annihilation channels. Version 1.0 of this tool accepts user-generated models with 2→2 tree-level dark matter annihilation to pairs of Standard Model (SM) particles and analyzes DM annihilation to γ rays. The tool consists of three modules, which can be run in a loop in order to scan over DM mass if desired: The annihilation fraction module calls an internal installation of MadDM, a dark matter phenomenology plugin for the Monte Carlo event generator MadGraph5 _ aMC@NLO, to compute the thermally averaged cross section $\langle σv\rangle_i$ for each annihilation channel $χχ$ ($\bar{χ}$,$χ^†$)→ i $\∈{SM, SM}. . The module then computes the fractional annihilation rate (annihilation fraction) into each channel. The flux module combines the flux spectrum from each annihilation channel, weighted by the appropriate annihilation fractions, to compute the total flux at Earth due to DM annihilation. In DarkFlux v1.0, this module specifically computes the γ-ray flux for each channel using the publicly available PPPC4DMID tables. The analysis module compares the total flux to observational data and computes the upper limit at 95% confidence level (CL) on the total thermally averaged DM annihilation cross section. In DarkFlux v1.0, this module compares the total γ-ray flux to a joint-likelihood analysis of fifteen dwarf spheroidal galaxies (dSphs) analyzed by the Fermi-LAT collaboration. DarkFlux v1.0 automatically provides data tables and can plot the output of these three modules. In this manual, we briefly motivate this indirect-detection computer tool and review the essential DM physics. We then describe the several modules of DarkFlux in greater detail. Finally, we show how to install and run DarkFlux and provide two worked examples demonstrating its capabilities.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes

Background: Exploring metagenomic contigs and “binning” them into metagenome-assembled genomes (MAGs) are essential for the delineation of functional and evolutionary guilds within microbial communities. Despite the advances in automated binning algorithms, their capabilities in recovering MAGs with accuracy and biological relevance are so far limited. Researchers often find that human involvement is necessary to achieve representative binning results. This manual process however is expertise demanding and labor intensive, and it deserves to be supported by software infrastructure. Results: We present BinaRena, a comprehensive and versatile graphic interface dedicated to aiding human operators to explore metagenome assemblies via customizable visualization and to associate contigs with bins. Contigs are rendered as an interactive scatter plot based on various data types, including sequence metrics, coverage profiles, taxonomic assignments, and functional annotations. Various contig-level operations are permitted, such as selection, masking, highlighting, focusing, and searching. Binning plans can be conveniently edited, inspected, and compared visually or using metrics including silhouette coefficient and adjusted Rand index. Completeness and contamination of user-selected contigs can be calculated in real time. In demonstration of BinaRena’s usability, we show that it facilitated biological pattern discovery, hypothesis generation, and bin refinement in a complex tropical peatland metagenome. It enabled isolation of pathogenic genomes within closely related populations from the gut microbiota of diarrheal human subjects. It significantly improved overall binning quality after curating results of automated binners using a simulated marine dataset. Conclusions: BinaRena is an installation-free, dependency-free, client-end web application that operates directly in any modern web browser, facilitating ease of deployment and accessibility for researchers of all skill levels. The program is hosted at https://github.com/qiyunlab/binarena, together with documentation, tutorials, example data, and a live demo. It effectively supports human researchers in intuitive interpretation and fine tuning of metagenomic data.

59 BASIC BIOLOGICAL SCIENCES↗