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At least 775 records · Page 43

Mechanosensitive channels in bacteria as membrane tension reporters

The purpose of this short review is to discuss recent data on the molecular structure and mechanism of gating of MscL, a mechanosensitive channel of large conductance from Escherichia coli. MscL is the first isolated molecule shown to convert mechanical stress of the membrane into a simple response, the opening of a large aqueous pore. The functional complex appears to be a stable homo-pentamer of 15-kDa subunits, the gating transitions in which are driven by stretch forces conveyed through the lipid bilayer. We have measured the open probability of MscL and the kinetics of transitions as a function of membrane tension. The parameters extracted from the single-channel current recordings and dose-response curves such as the energy difference between the closed, open, and intermediate conducting states, and the transition-related changes in protein dimensions suggest a large conformational rearrangement of the channel complex. The estimations show that in native conditions MscL openings could be driven primarily by forces of osmotic nature. The thermodynamic and spatial parameters reasonably correlate with the available data on the structure of a single MscL subunit and multimeric organization of the complex. Combined with the functional analysis of mutations, these data give grounds to hypotheses on the nature of the channel mechanosensitivity.

Review↗

Industry case studies: Finance

This article, the third in a series on the U.S. Department of Energy and IDEA collaboration, focuses on financial strategies used by institutions to support district energy system modernization and decarbonization. It highlights how effective funding models, long-term cost analysis, and leadership support are critical to implementing large-scale infrastructure upgrades. The case studies show different approaches to financing. Ball State University demonstrates how life-cycle cost analysis and phased funding—supported by state funding, bonds, and grants—enabled a transition to geothermal energy. Penn State’s Hershey Medical Center emphasizes the importance of financial leadership, shifting from reactive budgeting to data-driven, proactive investment in infrastructure. The University of Washington highlights how comprehensive data collection and analytics can justify investments and even create self-sustaining funding mechanisms like green revolving funds. Overall, the article shows that combining strong financial planning, data-driven decision-making, and innovative funding approaches is essential for advancing sustainable district energy systems while managing high upfront costs.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Advanced data analysis in inertial confinement fusion and high energy density physics

Bayesian analysis enables flexible and rigorous definition of statistical model assumptions with well-characterized propagation of uncertainties and resulting inferences for single-shot, repeated, or even cross-platform data. This approach has a strong history of application to a variety of problems in physical sciences ranging from inference of particle mass from multi-source high-energy particle data to analysis of black-hole characteristics from gravitational wave observations. The recent adoption of Bayesian statistics for analysis and design of high-energy density physics (HEDP) and inertial confinement fusion (ICF) experiments has provided invaluable gains in expert understanding and experiment performance. In this Review, we discuss the basic theory and practical application of the Bayesian statistics framework. We highlight a variety of studies from the HEDP and ICF literature, demonstrating the power of this technique. Due to the computational complexity of multi-physics models needed to analyze HEDP and ICF experiments, Bayesian inference is often not computationally tractable. Two sections are devoted to a review of statistical approximations, efficient inference algorithms, and data-driven methods, such as deep-learning and dimensionality reduction, which play a significant role in enabling use of the Bayesian framework. We provide additional discussion of various applications of Bayesian and machine learning methods that appear to be sparse in the HEDP and ICF literature constituting possible next steps for the community. We conclude by highlighting community needs, the resolution of which will improve trust in data-driven methods that have proven critical for accelerating the design and discovery cycle in many application areas.

47 OTHER INSTRUMENTATION↗

Towards an Indian Land Data Assimilation System (ILDAS): A Coupled Hydrologic-Hydraulic System for Water Balance Assessments

Effective management of water resources requires reliable estimates of land surface states and fluxes, including water balance components. But most land surface models run in uncoupled mode and do not produce river discharge at catchment scales to be useful for water resources management applications. Such integrated systems are also rare over India where hydrometeorological extremes have wreaked havoc on the economy and people. So, an Indian Land Data Assimilation System (ILDAS) with a coupled land surface and a hydrodynamic model has been developed and driven by multiple meteorological forcings (0.1°, daily) to estimate land surface states, channel discharge, and floodplain inundation. ILDAS benefits from an integrated framework as well as the largest suite of observation records collected over India and has been used to produce a reanalysis product for 1981–2021 using four forcing datasets, namely, Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2), Climate Hazards Group InfraRed Precipitation with Station data (CHIRPS), ECMWF’s ERA-5, and Indian Meteorological Department (IMD) gridded precipitation. We assessed the uncertainty and bias in these precipitation datasets and validated all major components of the terrestrial water balance, i.e., surface runoff, soil moisture, terrestrial water storage anomalies, evapotranspiration, and streamflow, against a combination of satellite and in situ observation datasets. Our assessment shows that ILDAS can represent the hydrological processes reasonably well over the Indian landmass with IMD precipitation showing the best relative performance. Evaluation against ESA-CCI soil moisture shows that MERRA-2 based estimates outperform the others, whereas ERA-5 performs best in simulating evapotranspiration when evaluated against MODIS ET. Evaluations against observed records show that CHIRPS-based estimates have the highest performance in reconstructing surface runoff and streamflow. Once operational, this system will be useful for supporting transboundary water management decision making in the region.

Indian Land Data Assimilation System (ILDAS)↗

Feedstock Carbon Intensity Calculator (FD-CIC): Users’ Manual and Technical Documentation

The carbon intensities (CIs) of biofuels are determined with the life cycle analysis (LCA) technique, which accounts for the energy/material uses and emissions during the complete supply chain of biofuel including feedstock production and fuel conversion stages. Regulatory agencies such as California Air Resources Board (CARB) adopts LCA to calculate biofuel CIs. The Low Carbon Fuel Standard (LCFS) program developed by CARB allows individual biofuel conversion facilities to submit their own biofuel CIs with their facility input data and incentivizes the reduction in the CI specific to that particular facility compared to a reference fuel’s CI (Liu et al 2020). Such an incentive program has driven innovations in biorefineries to reduce their greenhouse gas (GHG) emissions by linking their revenue directly to its CI score through LCFS credit trading. Besides the biofuel conversion stage, different farming practices for feedstock growth can result in significant CI variations for feedstocks, thus for biofuels. To provide evidence-based research findings, the U.S. Department of Energy’s Advanced Research Projects Agency–Energy (ARPA-E) has supported the Systems Assessment Center of the Energy Systems and Infrastructure Analysis Division at Argonne National Laboratory to examine CI variations of different farming practices to grow agricultural crops for biofuel production. Meanwhile, the ARPA-E has launched the Systems for Monitoring and Analytics for Renewable Transportation Fuels from Agricultural Resources and Management (SMARTFARM) program to develop technologies and data platforms that enable an accurate measurement of key farming parameters that can help robust accounting of the GHG benefits of sustainable, low-carbon agronomic practices at farm level.

54 ENVIRONMENTAL SCIENCES↗

NASA GES DISC support of CO2 Data from OCO-2, ACOS, and AIRS

NASA Goddard Earth Sciences Data and Information Services Centers (GES DISC) is the data center assigned to archive and distribute current AIRS, ACOS data and data from the upcoming OCO-2 mission. The GES DISC archives and supports data containing information on CO2 as well as other atmospheric composition, atmospheric dynamics, modeling and precipitation. Along with the data stewardship, an important mission of GES DISC is to facilitate access to and enhance the usability of data as well as to broaden the user base. GES DISC strives to promote the awareness of science content and novelty of the data by working with Science Team members and releasing news articles as appropriate. Analysis of events that are of interest to the general public, and that help in understanding the goals of NASA Earth Observing missions, have been among most popular practices.Users have unrestricted access to a user-friendly search interface, Mirador, that allows temporal, spatial, keyword and event searches, as well as an ontology-driven drill down. Variable subsetting, format conversion, quality screening, and quick browse, are among the services available in Mirador. The majority of the GES DISC data are also accessible through OPeNDAP (Open-source Project for a Network Data Access Protocol) and WMS (Web Map Service). These services add more options for specialized subsetting, format conversion, image viewing and contributing to data interoperability.

Wei, Jennifer C↗

Toward a Seamless Integration of Computing, Experimental, and Observational Science Facilities: A Blueprint to Accelerate Discovery

The Department of Energy, Office of Science operates world-leading facilities for experimental, observational, and computational science. DOE supercomputing facilities will reach performance at the scale of ExaFLOPs in the coming years, enabling new vistas of scale and precision for large scale simulations and data analysis. Experimental scientific facilities are undergoing similar upgrades that will lead to higher data rates and correspondingly larger computational demands, and will increase the need for near-real-time processing and resilient support for more complex workflows. A transformation of science is underway, with workloads at supercomputing facilities increasingly driven by this explosion of data from instruments and experimental facilities, as well as the accelerating use of Artificial Intelligence (AI) as a tool for scientific discovery. A seamless integration of computing, networking, instruments, and experimental facilities is required to support these emerging workloads and open up a new frontier of U.S. leadership in scientific discovery. We propose to accomplish this by providing frictionless access to the ASCR supercomputing facilities. We describe our vision of combining the power of ASCR supercomputers and networking infrastructure into an integrated scalable fabric, available to end user scientists via interfaces that aim to automate and simplify access to high performance computing systems. This will enable unprecedented computational science capabilities for experimental and observational facilities, and will create new opportunities to combine large simulations and modeling with experimental facility data analysis. This blueprint for creating an integrated network of computational and experimental facilities will provide an enriched discovery environment and open doors for new scientific communities to access the DOE’s world-leading computing and networking capabilities.

97 MATHEMATICS AND COMPUTING↗

The origin and evolution of viruses inferred from fold family structure

The canonical frameworks of viral evolution describe viruses as cellular predecessors, reduced forms of cells, or entities that escaped cellular control. The discovery of giant viruses has changed these standard paradigms. Their genetic, proteomic and structural complexities resemble those of cells, prompting a redefinition and reclassification of viruses. In a previous genome-wide analysis of the evolution of structural domains in proteomes, with domains defined at the fold superfamily level, we found the origins of viruses intertwined with those of ancient cells. In this review, we extend these data-driven analyses to the study of fold families confirming the co-evolution of viruses and ancient cells and the genetic ability of viruses to foster molecular innovation. The results support our suggestion that viruses arose by genomic reduction from ancient cells and validate a co-evolutionary ‘symbiogenic’ model of viral origins.

59 BASIC BIOLOGICAL SCIENCES↗

Extreme flood return levels in a U.S. mid-Atlantic estuary using 40-year fluvial-coastal model simulations

Using an integrated watershed-coastal modeling framework, we conducted long-term historical simulations (1980-2019) of fluvial and coastal flooding in the Delaware Bay and River, a vulnerable estuarine system in the U.S., at high spatial resolutions. By applying process-based models, we generated physically consistent and spatially detailed estimates of estuarine, riverine, and surge-driven extreme water level compared to previous studies that used field data only. We then evaluated changes in the magnitude of flood events using the 40-year simulations and detrended Floodwater Depth values with stationary extreme value analysis. Our detailed assessment of spatial-varying extreme values revealed how different flood-generation mechanisms can dominate various zones in the estuary. The datasets produced through this work will be valuable for long-term flood hazard mitigation planning in coastal communities in the Delaware Bay and River region. Additionally, this work will serve as a benchmark for other coastal flood hazard modeling communities worldwide, aiding them in systematically modeling long-term and continuous extreme flood events.

Coastal and Riverine Flooding↗

Application driven interface generation for EASIE

The Environment for Application Software Integration and Execution (EASIE) provides a user interface and a set of utility programs which support the rapid integration and execution of analysis programs about a central relational database. EASIE provides users with two basic modes of execution. One of them is a menu-driven execution mode, called Application-Driven Execution (ADE), which provides sufficient guidance to review data, select a menu action item, and execute an application program. The other mode of execution, called Complete Control Execution (CCE), provides an extended executive interface which allows in-depth control of the design process. Currently, the EASIE system is based on alphanumeric techniques only. It is the purpose of this project to extend the flexibility of the EASIE system in the ADE mode by implementing it in a window system. Secondly, a set of utilities will be developed to assist the experienced engineer in the generation of an ADE application.

Kao, Ya-Chen↗

Numerical study of transient flow phenomena in shock tunnels

Computational fluid dynamics (CFD) was used to study some transient flow features that can occur during the startup process of a shoch tunnel. The investigation concentrated on two areas: (1) the flow near the endwall of the driven tube during shock reflection and (2) the transient flow in the nozzle. The driven tube calculations were inviscid and focused on the study of a vortex system that was seen to form at the driven tube's axis of symmetry. The nozzle flow calculations examined viscous and inviscid effects during nozzle startup. The CFD solutions of the nozzle flows were compared with experimental data to demonstrate the effectiveness of the numerical analysis.

Tokarcik-Polsky, Susan↗

AstroBetter: A Blog and Wiki for Professional Astronomers

AstroBetter.com is a multi-contributor blog and wiki website designed for information sharing among professional astronomers. The goal of the site is to increase the productivity of astronomers by creating a centralized location for tips and tools of our multifaceted trade. Our content includes topics related to data reduction and analysis, general computing, writing papers and proposals, giving talks, teaching, career planning, productivity, organization, and diversity and equity in science and education. While we have several contributors, the site is intended to be community driven and we encourage everyone to publish to the wiki, submit guest posts, suggest post ideas, and to comment on blog entries. One of our primary goals is to consolidate and reduce the transient nature of the astronomy community's collective knowledge base by having an active wiki. Currently, the most common way to share astro-centric tools and tips that are not appropriate for a published paper, is to put them on an individual's website. However, the average astronomer's website will have at least four different addresses over the course of their career and only the site owner can edit the content. As a result, information on personal websites goes stale very quickly and deal links to such sites abound. It is our hope that community maintained wikis, such as the one hosted on AstroBetter, will gradually replace the personal website. In this poster we introduce the contributors to AstroBetter, show statistics about our current readership, give excerpts of some of our most popular posts and wiki entries, and show how anyone can add or edit content on the wiki. The goal of this poster is to spread the work about AstroBetter and increase our community of readers and wiki editors, because together, we can AstroBetter.

Rigby, Jane↗

Detecting the undetected: Dealing with non-routine events using advanced M&V meter-based savings approaches

In a rapidly evolving energy industry, utilities are dealing with new challenges like integrating distributed energy resources and market saturation for advanced lighting retrofits. Demand-side management programs require new approaches to meet aggressive carbon reduction goals. Advanced measurement & verification (M&V) is an energy data analysis method using smart meter data in combination with analytics to quantify energy efficiency project savings. Advanced M&V shows great promise for supporting next generation commercial programs including retro commissioning, multi-measure retrofits, and behavior change programs. Advanced M&V captures real project impacts at the meter, but sometimes non-project events can also impact consumption (so-called “non-routine events” [NREs]). Accurately detecting and accounting for NREs is important for reducing uncertainty of savings estimates and helps manage investment risk for different stakeholders (e.g., utilities, building owners, ESCOs). Recent research has shown promise in establishing data-driven techniques to identify and adjust for NREs, but fundamental questions still remain, such as: how can you distinguish NREs from acceptable noise in energy consumption profiles? What is the frequency and magnitude of NREs? Can their detection and adjustment be automated and streamlined? This paper documents the state of the art in NRE quantification and analysis. The results of research to quantify the frequency, nature and direction of NREs, and methods and metrics for determining a trigger threshold for taking action on NREs are presented. The paper also documents the latest technical guidance on application of NRE detection and adjustment methods.

Fernandes, Samuel↗

GeneLab: A Systems Biology Platform for Spaceflight Omics Data

NASA's mission includes expanding our understanding of biological systems to improve life on Earth and to enable long-duration human exploration of space. Resources to support large numbers of spaceflight investigations are limited. NASA's GeneLab project is maximizing the science output from these experiments by: (1) developing a unique public bioinformatics database that includes space bioscience relevant "omics" data (genomics, transcriptomics, proteomics, and metabolomics) and experimental metadata; (2) partnering with NASA-funded flight experiments through bio-sample sharing or sample augmentation to expedite omics data input to the GeneLab database; and (3) developing community-driven reference flight experiments. The first database, GeneLab Data System Version 1.0, went online in April 2015. V1.0 contains numerous flight datasets and has search and download capabilities. Version 2.0 will be released in 2016 and will link to analytic tools. In 2015 Genelab partnered with two Biological Research in Canisters experiments (BBRIC-19 and BRIC-20) which examine responses of Arabidopsis thaliana to spaceflight. GeneLab also partnered with Rodent Research-1 (RR1), the maiden flight to test the newly developed rodent habitat. GeneLab developed protocols for maxiumum yield of RNA, DNA and protein from precious RR-1 tissues harvested and preserved during the SpaceX-4 mission, as well as from tissues from mice that were frozen intact during spaceflight and later dissected. GeneLab is establishing partnerships with at least three planned flights for 2016. Organism-specific nationwide Science Definition Teams (SDTs) will define future GeneLab dedicated missions and ensure the broader scientific impact of the GeneLab missions. GeneLab ensures prompt release and open access to all high-throughput omics data from spaceflight and ground-based simulations of microgravity and radiation. Overall, GeneLab will facilitate the generation and query of parallel multi-omics data, and deep curation of metadata for integrative analysis, allowing researchers to uncover cellular networks as observed in systems biology platforms. Consequently, the scientific community will have access to a more complete picture of functional and regulatory networks responsive to the spaceflight environment.. Analysis of GeneLab data will contribute fundamental knowledge of how the space environment affects biological systems, and enable emerging terrestrial benefits resulting from mitigation strategies to prevent effects observed during exposure to space. As a result, open access to the data will foster new hypothesis-driven research for future spaceflight studies spanning basic science to translational science.

proteomics↗

Flash Drought as Captured by Reanalysis Data: Disentangling the Contributions of Precipitation Deficit and Excess Evapotranspiration

Flash droughts – uncharacteristically rapid dryings of the land system – are naturally associated with extreme precipitation deficits. Such precipitation deficits, however, do not tell the whole story, for land surface drying can be exacerbated by anomalously high evapotranspiration (ET) rates driven by anomalously high temperatures (e.g., during heatwaves), anomalously high incoming radiation (e.g., from reduced cloudiness), and other meteorological anomalies. In this study, the relative contributions of precipitation and ET anomalies to flash drought generation in the Northern Hemisphere are quantified through the analysis of diagnostic fields contained within the MERRA-2 reanalysis product. Unique to the approach is the explicit treatment of soil moisture impacts on ET through relationships diagnosed from the reanalysis data; under this treatment, an ET anomaly that is negative relative to the local long-term climatological mean is still considered positive in terms of its contribution to a flash drought if it is high for the concurrent value of soil moisture. Maps produced in the analysis show the fraction of flash drought production stemming specifically from ET anomalies and illustrate how ET anomalies for some droughts are related to temperature and radiation anomalies. While ET is found to have an important impact on flash drought production in the central US and in parts of Russia known from past studies to be prone to heatwave-related drought, and while this impact does appear stronger during the onset (first several days) of flash droughts, overall the contribution of ET to these droughts is small relative to the contribution of precipitation deficit.

R D Koster↗

Review of data-driven models for quantifying load shed by non-residential buildings in the United States

Shifting and shedding power demand in buildings can be cost-effective techniques for grids to function reliably and for end users to earn compensation. Grid operators reimburse customers in proportion to the quantity of load shed. Simple data-driven methods are used to quantify this shed, which is the difference between a measured load during the event and modeled "baseline" that would have occurred in absence of the event. These methods have evolved over the years and in many cases have been integrated with building physics, to make them a hybrid between physics based and empirical models. However, there is no comprehensive analysis that provides guidance to building operators, grid operators and researchers in selecting appropriate models based on their specific needs and available data. Here, this work aims to fill this gap by critically assessing the performance of baseline models put forward from the year 2000 through 2023. The literature reviewed includes reports generated by grid operators, reports from national laboratories and academic journal articles. The work outlines modeling features like the inputs, training period, estimation method, adjustments to fine tune the predictions and metrics to evaluate the performance. A comprehensive list of 50 models has been provided. For each model, the study explores the applicability of the model to weather sensitive buildings, variability in the building profile, timing of the event, and whether the building reduces energy consumption before an event. The work identifies the situations in which a particular model works and draws lessons based on evidence of performance. Finally, recommendations to aid in model selection are given.

97 MATHEMATICS AND COMPUTING↗

Insights into Prismatic Loop Formation in Irradiated Fe–Cr Alloys from Hypothesis-Driven Active Learning and Causal Analysis

Neutron and electron irradiation experimental studies conducted on body-centered cubic Fe and Fe–Cr alloys have established two prismatic dislocation loop populations, which have Burgers vectors of either a/2$\langle$111$\rangle$ or a$\langle$100$\rangle$. Here, the loop formation depends on factors such as dose (D), dose rate (D rt ), temperature (T), chromium content (Cr%), and other alloying elements. Hence, it is important to understand how irradiation-induced dislocation loops evolve conditional upon the loop characteristics, such as loop density (DD), average loop size d̅, and irradiation parameters (D, D rt , T, and irradiation type), which is still an active area of research. To understand these complex structure–property relationships, machine learning (ML) is employed in a three-step approach. This includes imputing missing data with a k-nearest neighbor, generating functionalized features, and assessing feature importance with random forest classification and regression. Physics-based features are incorporated in a hypothesis-driven active learning scheme to overcome data unavailability challenges. Insights obtained from ML models (i) to categorize dislocation loop types, show the highest correlation with d̅; (ii) Log(DD), obtained through mathematical formulations involving D, Cr%, d̅, and T (e.g., Log(DD) ~ D + exp(-Cr%) + 1/d̅ and log(DD) ~ D + exp(-Cr%) + 1/T). Hypothesis-driven active learning is able to predict Log(DD) in which the experimental date is not known. Causal models verify cause–effect relationships for dislocation loop classification and irradiation factors in FeCr alloys.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The CanBikeCO Full Pilot: Long-Term Results and Analysis From an E-Bike Program in Colorado, USA

Personal micromobility devices like bicycles, e-bikes, and scooters are low- or zero-energy alternatives to single-occupancy vehicles. However, a lack of data has led to a dearth of data-driven research on personally owned e-bike usage. We present longitudinal findings from the CanBikeCO program, focused on e-bike adoption and use across demographics, trip characteristics, and geographies in the state of Colorado. CanBikeCO recorded travel survey data from low-income individuals provided with personal e-bikes by the Colorado Energy Office in six communities across Colorado from July 2021 to December 2022. The data were collected using a custom instance of the National Renewable Energy Laboratory OpenPATH platform, which combines passive data collection with semantic information such as trip mode and purpose labels. To our knowledge, there are no prior travel survey data on personally owned e-bikes with this range and scope. Insights from this unique dataset include: (i) work trips were 17% more likely than average trips to be taken on an e-bike, (ii) e-bikes were most often reported to replace cars (34% of e-bike trips) and other personal micromobility devices (22%), and (iii) participants favored walking for trips less than 1 mile, e-bikes for trips of 1-3 miles, and e-bikes, cars, or shared rides for trips of 3-20 miles. The data used to generate these results have been made available in the Transportation Secure Data Center. We find e-bike use is appealing across age groups and may be related to characteristics of land use, urban form, occupation, income, and car ownership. We conclude for this population that the energy demand added by e-bike use (induced demand and replacing non-motorized modes) is outweighed by the reduction in energy demand from replacement of single-occupancy vehicle trips with e-bike trips. Our findings suggest considerable potential for energy savings from personal e-bike ownership.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗