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At least 775 records · Page 43

Functional Characterization of Four Putative δ1-Pyrroline-5-Carboxylate Reductases from Bacillus subtilis

In most living organisms, the amino acid proline is synthesized starting from both glutamate and ornithine. In prokaryotes, in the absence of an ornithine cyclodeaminase that has been identified to date only in a small number of soil and plant bacteria, these pathways share the last step, the reduction of δ1-pyrroline-5-carboxylate (P5C) catalyzed by P5C reductase (EC 1.5.1.2). In several species, multiple forms of P5C reductase have been reported, possibly reflecting the dual function of proline. Aside from its common role as a building block of proteins, proline is indeed also involved in the cellular response to osmotic and oxidative stress conditions. Genome analysis of Bacillus subtilis identifies the presence of four genes (ProH, ProI, ProG, and ComER) that, based on bioinformatic and phylogenic studies, were defined as respectively coding a putative P5C reductase. Here we describe the cloning, heterologous expression, functional analysis and small-angle X-ray scattering studies of the four affinity-purified proteins. Results showed that two of them, namely ProI and ComER, lost their catalytic efficiency or underwent subfunctionalization. In the case of ComER, this could be likely explained by the loss of the ability to form a dimer, which has been previously shown to be an essential structural feature of the catalytically active P5C reductase. The properties of the two active enzymes are consistent with a constitutive role for ProG, and suggest that ProH expression may be beneficial to satisfy an increased need for proline.

59 BASIC BIOLOGICAL SCIENCES↗

Characterization of Natural Consolidated Halloysite Nanotube Structures

Halloysite is a unique 1:1 clay mineral frequently appearing with nanotubular morphology, and having surfaces of different polarity with interesting and important technological applications. HNTs can be consolidated naturally in the earth by pressure and thermal flows. In this study of natural consolidated HNTs, the strength and hardness of these materials were found to be dependent on the presence of impurities (gibbsite, alunite, quartz, and other silica minerals), which accounted for the increased stability of such samples. In the absence of impurities, the strength of consolidated HNTs was significantly lower. The first 3D mapping of the pore structure of natural consolidated HNT is provided. The contributions of the porosity within the nanotubes and between the nanotubes were delineated using a combination of non-invasive ultra-small and small-angle X-ray scattering (USAXS/SAXS) analyses, BET/BJH pore size analyses, and computed tomography studies. A total porosity of 40%, as determined by X-ray attenuation and He porosimetry, was found for the natural consolidated HNTs, of which about one-third was due to the inter-HNT porosity. Nano-X-ray computed tomography (nano-XCT) analyses also indicated that 76% of the inter-HNT pores were smaller than 150 nm in diameter. The intra-HNT pore size determined by combined USAXS/SAXS and BET/BJH was about 10 nm. This pore network information is essential for the utilization of natural consolidated HNTs as a model geomaterial to investigate the effects of surface characteristics on confined fluid flow.

36 MATERIALS SCIENCE↗

Characterizing mid-ultraviolet to optical light curves of nearby type IIn supernovae

Here, we present early mid-ultraviolet and optical observations of Type IIn supernovae (SNe IIn) observed from 2007 to 2013. Our results focus on the properties of UV light curves: peak absolute magnitudes, temporal decay, and color evolution. During early times, this sample demonstrates that UV light decays faster than optical, and each event transitions from a predominantly UV-bright phase to an optically bright phase. In order to understand early UV behavior, we generate and analyze the sample's blackbody luminosity, temperature, and radius as the SN ejecta expand and cool. Since most of our observations were detected post maximum luminosity, we introduce a method for estimating the date of peak magnitude. When our observations are compared based on filter, we find that even though these SNe IIn vary in peak magnitudes, there are similarities in UV decay rates. We use a simple semi-analytical SN model in order to understand the effects of the explosion environment on our UV observations. Understanding the UV characteristics of nearby SNe IIn during an early phase can provide valuable information about the environment surrounding these explosions, leading us to evaluating the diversity of observational properties in this subclass.

79 ASTRONOMY AND ASTROPHYSICS↗

Point source polarimetry with the Gemini Planet Imager: Sensitivity characterization with T5.5 dwarf companion HD 19467 B

Detecting polarized light from self-luminous exoplanets has the potential to provide key information about rotation, surface gravity, cloud grain size, and cloud coverage. While field brown dwarfs with detected polarized emission are common, no exoplanet or substellar companion has yet been detected in polarized light. With the advent of high contrast imaging spectro-polarimeters such as GPI and SPHERE, such a detection may now be possible with careful treatment of instrumental polarization. In this paper, we present 28 minutes of H-band GPI polarimetric observations of the benchmark T5.5 companion HD 19467 B. We detect no polarization signal from the target, and place an upper limit on the degree of linear polarization of p{sub CL99.73%}⩽2.4%. We discuss our results in the context of T dwarf cloud models and photometric variability.

79 ASTRONOMY AND ASTROPHYSICS↗

Spectroscopic characterization of HD 95086 b with the Gemini Planet Imager

Here, we present new H (1.5–1.8 μm) photometric and K 1 (1.9–2.2 μm) spectroscopic observations of the young exoplanet HD 95086 b obtained with the Gemini Planet Imager. The H-band magnitude has been significantly improved relative to previous measurements, whereas the low-resolution K 1 ($\lambda /\delta \lambda \approx 66$) spectrum is featureless within the measurement uncertainties and presents a monotonically increasing pseudo-continuum consistent with a cloudy atmosphere. By combining these new measurements with literature $L^{\prime} $ photometry, we compare the spectral energy distribution (SED) of the planet to other young planetary-mass companions, field brown dwarfs, and to the predictions of grids of model atmospheres. HD 95086 b is over a magnitude redder in ${K}_{1}-L^{\prime} $ color than 2MASS J12073346–3932539 b and HR 8799 c and d, despite having a similar $L^{\prime} $ magnitude. Considering only the near-infrared measurements, HD 95086 b is most analogous to the brown dwarfs 2MASS J2244316+204343 and 2MASS J21481633+4003594, both of which are thought to have dusty atmospheres. Morphologically, the SED of HD 95086 b is best fit by low temperature (${T}_{{\rm{eff}}}$ = 800–1300 K), low surface gravity spectra from models which simulate high photospheric dust content. This range of effective temperatures is consistent with field L/T transition objects, but the spectral type of HD 95086 b is poorly constrained between early L and late T due to its unusual position the color–magnitude diagram, demonstrating the difficulty in spectral typing young, low surface gravity substellar objects. As one of the reddest such objects, HD 95086 b represents an important empirical benchmark against which our current understanding of the atmospheric properties of young extrasolar planets can be tested.

79 ASTRONOMY AND ASTROPHYSICS↗

Observation and characterization of a cosmic muon neutrino flux from the northern hemisphere using six years of IceCube data

The IceCube Collaboration has previously discovered a high-energy astrophysical neutrino flux using neutrino events with interaction vertices contained within the instrumented volume of the IceCube detector. We present a complementary measurement using charged current muon neutrino events where the interaction vertex can be outside this volume. As a consequence of the large muon range the effective area is significantly larger but the field of view is restricted to the Northern Hemisphere. IceCube data from 2009 through 2015 have been analyzed using a likelihood approach based on the reconstructed muon energy and zenith angle. At the highest neutrino energies between 194 TeV and 7.8 PeV a significant astrophysical contribution is observed, excluding a purely atmospheric origin of these events at 5.6σ significance. The data are well described by an isotropic, unbroken power-law flux with a normalization at 100 TeV neutrino energy of (0.90{sub −0.27}{sup +0.30})×10{sup −18} GeV{sup −1} cm{sup −2} s{sup −1} sr{sup −1} and a hard spectral index of γ=2.13±0.13. The observed spectrum is harder in comparison to previous IceCube analyses with lower energy thresholds which may indicate a break in the astrophysical neutrino spectrum of unknown origin. The highest-energy event observed has a reconstructed muon energy of (4.5±1.2) PeV which implies a probability of less than 0.005% for this event to be of atmospheric origin. Analyzing the arrival directions of all events with reconstructed muon energies above 200 TeV no correlation with known γ-ray sources was found. Using the high statistics of atmospheric neutrinos we report the current best constraints on a prompt atmospheric muon neutrino flux originating from charmed meson decays which is below 1.06 in units of the flux normalization of the model in Enberg et al.

79 ASTRONOMY AND ASTROPHYSICS↗

Toward Rapid Transient Identification and Characterization of Kilonovae

With the increasing sensitivity of advanced gravitational-wave (GW) detectors, the first joint detection of an electromagnetic and GW signal from a compact binary merger will hopefully happen within this decade. However, current GW likelihood sky areas span ∼100--1000 deg{sup 2}, and thus it is a challenging task to identify which, if any, transient corresponds to the GW event. In this study, we make a comparison between recent kilonova/macronova light-curve models for the purpose of assessing potential light-curve templates for counterpart identification. We show that recent analytical and parameterized models for these counterparts result in qualitative agreement with more complicated radiative transfer simulations. Our analysis suggests that with improved light-curve models with smaller uncertainties it will become possible to extract information about ejecta properties and binary parameters directly from the light-curve measurement. Even tighter constraints are obtained in cases for which GW and kilonova parameter estimation results are combined. It will therefore be important to make comparisons and potentially combine parameter estimation with the kilonova and GW results. However, to be prepared for upcoming detections, more realistic kilonova models are needed. These will require numerical relativity with more detailed microphysics, better radiative transfer simulations, and a better understanding of the underlying nuclear physics.

79 ASTRONOMY AND ASTROPHYSICS↗

The Joint Agency Commercial Imagery Evaluation Team and Product Characterization Approach

The Joint Agency Commercial Imagery Evaluation (JACIE) team is a collaborative interagency group focused on the characterization of commercial remote sensing data products. The team members - the National Aeronautics and Space Administration (NASA), the National Imagery and Mapping Agency (NIMA), and the U.S. Geological Survey (USGS) - each have a vested interest in the purchase and use of commercial imagery to support government research and operational applications. For both research and applications, commercial products must be well characterized for precision, accuracy, and repeatability. Since commercial systems are built and operated with no government insight or oversight, the JACIE team provides an independent product characterization of delivered image and image-derived end products. End product characterization differs from the systems calibration approach that is typically used with government systems, where detailed system design information is available. The product characterization approach addresses three primary areas of product performance: geopositional accuracy, image quality, and radiometric accuracy. The JACIE team utilizes well-characterized test sites to support characterization activities. To characterize geopositional accuracy, the team utilizes sites containing several "photo-identifiable" targets and compares their precisely known locations with those defined by the commercial image product. In the area of image quality, spatial response is characterized using edge targets and pulse targets to measure edge response and to estimate image modulation transfer function. Additionally, imagery is also characterized using the National Imagery Interpretability Rating Scale, a means of quantifying the ability to identify certain targets (e.g., rail-cars, airplanes) within an image product. Radiometric accuracy is characterized using reflectance-based vicarious calibration methods at several uniform sites. Each JACIE agency performs an aspect of product characterization based on its area of expertise, thus minimizing duplication of effort. The JACIE team collaborated to perform comprehensive characterization of products from Space Imaging Inc.'s IKONOS satellite and from DigitalGlobe's QuickBird satellite and is currently characterizing products from OrbImage s OrbView-3. JACIE assessments have resulted in several improvements to commercial image product quality and have enhanced working relationships between government and industry. Assessment results are presented at an annual JACIE High Spatial Resolution Commercial Imagery Workshop.

Zanoni, Vicki↗

Software Suite to Support In-Flight Characterization of Remote Sensing Systems

A characterization software suite was developed to facilitate NASA's in-flight characterization of commercial remote sensing systems. Characterization of aerial and satellite systems requires knowledge of ground characteristics, or ground truth. This information is typically obtained with instruments taking measurements prior to or during a remote sensing system overpass. Acquired ground-truth data, which can consist of hundreds of measurements with different data formats, must be processed before it can be used in the characterization. Accurate in-flight characterization of remote sensing systems relies on multiple field data acquisitions that are efficiently processed, with minimal error. To address the need for timely, reproducible ground-truth data, a characterization software suite was developed to automate the data processing methods. The characterization software suite is engineering code, requiring some prior knowledge and expertise to run. The suite consists of component scripts for each of the three main in-flight characterization types: radiometric, geometric, and spatial. The component scripts for the radiometric characterization operate primarily by reading the raw data acquired by the field instruments, combining it with other applicable information, and then reducing it to a format that is appropriate for input into MODTRAN (MODerate resolution atmospheric TRANsmission), an Air Force Research Laboratory-developed radiative transport code used to predict at-sensor measurements. The geometric scripts operate by comparing identified target locations from the remote sensing image to known target locations, producing circular error statistics defined by the Federal Geographic Data Committee Standards. The spatial scripts analyze a target edge within the image, and produce estimates of Relative Edge Response and the value of the Modulation Transfer Function at the Nyquist frequency. The software suite enables rapid, efficient, automated processing of ground truth data, which has been used to provide reproducible characterizations on a number of commercial remote sensing systems. Overall, this characterization software suite improves the reliability of ground-truth data processing techniques that are required for remote sensing system in-flight characterizations.

Stanley, Thomas↗

Development of a Technical Standard for Radiological Characterization of DAW - 18062

Throughout its 70+-year history, the U.S. Department of Energy (DOE) and its predecessor agencies have performed a wide mission involving nuclear materials and weapons development, production, testing, and modernization. While the initial mission components relied heavily upon reactor physics and chemistry, the environmental programs have increasingly relied upon development of more accurate and effective measurement methodologies to determine the radiological and chemical properties of the unique waste streams that were generated during the weapons production and testing mission. Over time, the DOE laboratories and former production sites have developed a wide range of site-specific processes and procedures for conducting radiological characterization of dry active waste (DAW) that is managed as low-level radioactive waste. This has resulted in a Complex-wide variability among sites with respect to the methodologies and instrumentation used to characterize individual waste streams. The DAW-type waste was selected for development of a characterization standard since it is a simple, voluminous, and repetitive waste stream with a substantial knowledge base, established experience history at multiple site locations, and the potential for realization of programmatic benefits though standardization. The Energy Facility Contractors Group (EFCOG) Waste Management Working Group (WMWG) has proposed the development of a new DOE Technical Standard for radiological characterization of DAW. The purpose of the proposed new standard is to provide a technical resource that integrates and enhances the utilization of current site-specific methodologies and processes. A Technical Basis Document (TBD) has been prepared to support the development and utilization of the new standard by providing detailed information for use by site personnel when implementing the guidance provided in the standard. It also provides the rationale for and details concerning the recommended technical approaches for radiological characterization of representative DAW-type waste streams. The TBD will be included as an appendix to the proposed standard. Adoption of a standardized approach to DAW characterization will take advantage of multiple applications for a technology that is both mature and stable. The DAW characterization process is repetitive and lends itself to implementation at a wide range of operating locations - resulting in economies of scale, compliance with regulatory requirements, and consistent implementation of procedures which support design, operations, maintenance, and management of facilities, activities and programs. The purpose of the proposed new Technical Standard for DAW Radiological Characterization is to integrate and improve the utilization of current site-specific methodologies and processes and will include a comprehensive evaluation and comparison of current radiological characterization methodologies to determine which ones are most reliable and effective in producing relevant and valid data. In view of the long history and participation by several agencies in the regulation of nuclear programs, existing Voluntary Consensus Standards have also been reviewed for relevancy and applicability to the new proposed standard. The proposed new Standard will be developed in concert with existing scientific and regulatory guidance to produce a document that incorporates the state of current knowledge and site practices with a graded approach to applying those methodologies that are applicable and effective for characterizing a wide range of DAW-type wastes - including, but not limited to, debris, low specific activity (LSA) material, and surface contaminated objects (SCO). Under the leadership of the National Laboratory Subgroup of the EFCOG/WMWG), an EFCOG team will develop the proposed technical standard. This process will incorporate the information gathered during preparation of the TBD, which will serve as a technical resource to support the technical approach for selection of DAW characterization methodologies. Preparation of the TBD included a detailed survey of historical site practices and examination of the characterization approaches and measurement methodologies currently being applied to DAW-type wastes. Future activities include the development and submittal of a Project Justification Statement that will be submitted to the DOE Technical Standards Program for review and comment. The EFCOG/WMWG Team will respond to reviewer comments, as required. Following final concurrence by affected organizations through the DOE Technical Standards Coordination process, the EFCOG/WMWG Team will prepare the draft technical standard and respond to comments generated during RevCom review and final format review by the DOE Technical Standards Management Program. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗