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At least 775 records · Page 43

Glycosidic linkage, N -acetyl side-chain, and other structural properties of methyl 2-acetamido-2-deoxy-β- D -glucopyranosyl-(1→4)-β- D -mannopyranoside monohydrate and related compounds

The crystal structure of methyl 2-acetamido-2-deoxy-β-D-glycopyranosyl-(1→4)-β-D-mannopyranoside monohydrate, C 15 H 27 NO 11 ·H 2 O, was determined and its structural properties compared to those in a set of mono- and disaccharides bearing N -acetyl side-chains in βGlcNAc aldohexopyranosyl rings. Valence bond angles and torsion angles in these side chains are relatively uniform, but C—N (amide) and C—O (carbonyl) bond lengths depend on the state of hydrogen bonding to the carbonyl O atom and N—H hydrogen. Relative to N -acetyl side chains devoid of hydrogen bonding, those in which the carbonyl O atom serves as a hydrogen-bond acceptor display elongated C—O and shortened C—N bonds. This behavior is reproduced by density functional theory (DFT) calculations, indicating that the relative contributions of amide resonance forms to experimental C—N and C—O bond lengths depend on the solvation state, leading to expectations that activation barriers to amide cis – trans isomerization will depend on the polarity of the environment. DFT calculations also revealed useful predictive information on the dependencies of inter-residue hydrogen bonding and some bond angles in or proximal to β-(1→4) O -glycosidic linkages on linkage torsion angles φ and ψ. Hypersurfaces correlating φ and ψ with the linkage C—O—C bond angle and total energy are sufficiently similar to render the former a proxy of the latter.

Chemistry↗

Experimental Setup for Grid Control Device Software Updates in Supply Chain Cyber-Security

Supply chain cyberattacks that exploit insecure third-party software are a growing concern for the security of the electric power grid. These attacks seek to deploy malicious software in grid control devices during the fabrication, shipment, installation, and maintenance stages, or as part of routine software updates. Malicious software on grid control devices may inject bad data or execute bad commands, which can cause blackouts and damage power equipment. This paper describes an experimental setup to simulate the software update process of a commercial power relay as part of a hardware-in-the-loop simulation for grid supply chain cyber-security assessment. The laboratory setup was successfully utilized to study three supply chain cyber-security use cases.

Keller, Joseph↗

Elongated galactan side chains mediate cellulose–pectin interactions in engineered Arabidopsis secondary cell walls

SUMMARY The plant secondary cell wall is a thickened matrix of polysaccharides and lignin deposited at the cessation of growth in some cells. It forms the majority of carbon in lignocellulosic biomass, and it is an abundant and renewable source for forage, fiber, materials, fuels, and bioproducts. The complex structure and arrangement of the cell wall polymers mean that the carbon is difficult to access in an economical and sustainable way. One solution is to alter the cell wall polymer structure so that it is more suited to downstream processing. However, it remains difficult to predict what the effects of this engineering will be on the assembly, architecture, and properties of the cell wall. Here, we make use of Arabidopsis plants expressing a suite of genes to increase pectic galactan chain length in the secondary cell wall. Using multi‐dimensional solid‐state nuclear magnetic resonance, we show that increasing galactan chain length enhances pectin–cellulose spatial contacts and increases cellulose crystallinity. We also found that the increased galactan content leads to fewer spatial contacts of cellulose with xyloglucan and the backbone of pectin. Hence, we propose that the elongated galactan side chains compete with xyloglucan and the pectic backbone for cellulose interactions. Due to the galactan topology, this may result in comparatively weak interactions and disrupt the cell wall architecture. Therefore, introduction of this strategy into trees or other bioenergy crops would benefit from cell‐specific expression strategies to avoid negative effects on plant growth.

59 BASIC BIOLOGICAL SCIENCES↗

Circularity in polydiketoenamine thermoplastics via control over reactive chain conformation

Controlling the reactivity of bonds along polymer chains enables both functionalization and deconstruction with relevance to chemical recycling and circularity. Because the substrate is a macromolecule, however, understanding the effects of chain conformation on the reactivity of polymer bonds emerges as important yet underexplored. Here, we show how oxy-functionalization of chemically recyclable condensation polymers affects acidolysis to monomers through control over distortion and interaction energies in the rate-limiting transition states. Oxy-functionalization of polydiketoenamines at specific sites on either the amine or triketone monomer segments increased acidolysis rates by more than three orders of magnitude, opening the door to efficient deconstruction of linear chain architectures. These insights substantially broaden the scope of applications for polydiketoenamines in a circular manufacturing economy, including chemically recyclable adhesives for a diverse range of surfaces.

Science & Technology - Other Topics↗

Observation of Majorana fermions in ferromagnetic atomic chains on a superconductor

Majorana fermions are predicted to localize at the edge of a topological superconductor, a state of matter that can form when a ferromagnetic system is placed in proximity to a conventional superconductor with strong spin-orbit interaction. With the goal of realizing a one-dimensional topological superconductor, we have fabricated ferromagnetic iron (Fe) atomic chains on the surface of superconducting lead (Pb). Using high-resolution spectroscopic imaging techniques, we show that the onset of superconductivity, which gaps the electronic density of states in the bulk of the Fe chains, is accompanied by the appearance of zero-energy end-states. As a result, this spatially resolved signature provides strong evidence, corroborated by other observations, for the formation of a topological phase and edge-bound Majorana fermions in our atomic chains.

Nadj-Perge, Stevan↗

Crystal structure of a new chain diborate TmH[B{sub 2}O{sub 5}] and its comparison with related compound GdH[B{sub 2}O{sub 5}] based on the pseudosymmetry and the group-subgroup relation

Crystals of a new rare-earth chain diborate TmH[B{sub 2}O{sub 5}], space group C2/c, are obtained under hydrothermal conditions. The structure is determined without preliminary knowledge of the chemical formula. It is close to that of the GdH[B{sub 2}O{sub 5}] diborate studied earlier, but has a different orientation of the monoclinicity axis. In both structures the arrangement of atoms follows the pattern of the orthorhombic pseudosupergroup Cmca, which is most distinctly violated by the displacements of the rare-earth atoms. Their common anionic chain radical consists of diborate groups, namely, BO{sub 3} triangles and BO{sub 4} tetrahedra, 2[1T + 1{Delta}]. It is shown that the existence of two varieties that are based on the hypothetical orthorhombic prototype is determined by the pseudosymmetry and the difference between the ionic radii of the elements located at the middle and the end of the rare-earth series. The twinning and poor quality of the crystals are related to the effect of the m pseudoplane of the supergroup and cleavage. The structures of natural megaborates that contain diborate chains in complex boron-oxygen radicals are discussed.

36 MATERIALS SCIENCE↗

Specificities of Local Dynamics and Orientational State of Rigid-Chain Liquid-Crystal Polymers

Proton magnetic resonance (PMR) spectra and terahertz IR spectra of Vectra A950 fibers and granules and Armos fibers before and after heat treatment were obtained and analyzed in order to understand the molecular mobility mechanisms that ensure the self-organization and restructurization of these rigid-chain liquid-crystal polymers, as well as their similarity and difference. It is shown that large-scale thermal (quasi-segmental) mobility in such LC polymers is due to the reptation of macromolecules with respect to each other and the conformational transitions necessary for the motion of chains in them are the result of random accumulation of displacements that occur during local bending and torsional-vibrational movements in the links of polymer chains according to the Bresler–Frenkel mechanism.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Food And Agriculture Supply Chain Model

This model is part of an LDRD effort to investigate the connection of food and agriculture supply chain and the critical infrastructure. The model was built for a small number of farmers, shippers, processing companies and retailers as proof of concept to illustrate supply chain impacts. In this model, the emphasis is on understanding the climate change impacts on the food supply chain. The model uses agent-based modeling method in combination with machine learning. It also connects logistic simulation with economic principles such as price change caused by supply and demand, and consumer substitution effect based on price comparisons of two substitutable commodities.

Nguyen, Thuy↗

NeuralRW-Loihi: Spiking Discrete Time Markov Chain Simulator for Intel Loihi v

SAND2024-01302O NeuralRW-Loihi: Spiking Discrete Time Markov Chain Simulator for Intel Loihi is a neuromorphic script that generates a random walk simulation of a discrete-time Markov Chain for the Loihi neuromorphic hardware. The code was used to produce the paper "Neuromorphic scaling advantages for energy-efficient random walk computations" by Smith et al., 2021. It was published in Nature Electronics. The software provides code for implementing the discrete time Markov chain random walks on Intel's Loihi Neuromorphic platform. In addition, it provides an example problem through a mini app.

Aimone, James↗

Thermal chains and entrainment in cumulus updrafts, Part 2: Analysis of idealized simulations

Research has suggested that the structure of deep convection often consists of a series of rising thermals, or “thermal chain”, which contrasts with existing conceptual models that are used to construct cumulus parameterizations. In this work, simplified theoretical expressions for updraft properties obtained in Part 1 of this study are used to develop a hypothesis explaining why this structure occurs. In this hypothesis, cumulus updraft structure is strongly influenced by organized entrainment below the updraft’s vertical velocity maximum. In a dry environment, this enhanced entrainment can locally reduce condensation rates and increase evaporation, thus eroding buoyancy. For moderate-to-large initial cloud radius R, this breaks up the updraft into a succession of discrete pulses of rising motion (i.e., a thermal chain). For small R, this leads to the structure of a single, isolated rising thermal. In contrast, moist environments are hypothesized to favor plume-like updrafts for moderate-to-large R. In a series of axisymmetric numerical cloud simulations, R and environmental relative humidity (RH) are systematically varied to test this hypothesis. Vertical profiles of fractional entrainment rate, passive tracer concentration, buoyancy, and vertical velocity from these runs agree well with vertical profiles calculated from the theoretical expressions in Part 1. Analysis of the simulations supports the hypothesized dependency of updraft structure on R and RH, that is, whether it consists of an isolated thermal, a thermal chain, or a plume, and the role of organized entrainment in driving this dependency. Additional 3-dimensional (3-D) turbulent cloud simulations are analyzed, and the behavior of these 3-D runs is qualitatively consistent with the theoretical expressions and axisymmetric simulations.

54 ENVIRONMENTAL SCIENCES↗

Light Chain Amyloid Fibrils Cause Metabolic Dysfunction in Human Cardiomyocytes

Light chain (AL) amyloidosis is the most common form of systemic amyloid disease, and cardiomyopathy is a dire consequence, resulting in an extremely poor prognosis. AL is characterized by the production of monoclonal free light chains that deposit as amyloid fibrils principally in the heart, liver, and kidneys causing organ dysfunction. We have studied the effects of amyloid fibrils, produced from recombinant λ6 light chain variable domains, on metabolic activity of human cardiomyocytes. The data indicate that fibrils at 0.1 μM, but not monomer, significantly decrease the enzymatic activity of cellular NAD(P)H-dependent oxidoreductase, without causing significant cell death. The presence of amyloid fibrils did not affect ATP levels; however, oxygen consumption was increased and reactive oxygen species were detected. Confocal fluorescence microscopy showed that fibrils bound to and remained at the cell surface with little fibril internalization. Ultimately, these data indicate that AL amyloid fibrils severely impair cardiomyocyte metabolism in a dose dependent manner. These data suggest that effective therapeutic intervention for these patients should include methods for removing potentially toxic amyloid fibrils.

59 BASIC BIOLOGICAL SCIENCES↗

Accumulation of medium-chain, saturated fatty acyl moieties in seed oils of transgenic Camelina sativa

With its high seed oil content, the mustard family plant Camelina sativa has gained attention as a potential biofuel source. As a bioenergy crop, camelina has many advantages. It grows on marginal land with low demand for water and fertilizer, has a relatively short life cycle, and is stress tolerant. As most other crop seed oils, camelina seed triacylglycerols (TAGs) consist of mostly long, unsaturated fatty acyl moieties, which is not desirable for biofuel processing. In our efforts to produce shorter, saturated chain fatty acyl moieties in camelina seed oil for conversion to jet fuel, a 12:0-acyl-carrier thioesterase gene, UcFATB1, from California bay (Umbellularia californica Nutt.) was expressed in camelina seeds. Up to 40% of short chain laurate (C12:0) and myristate (C14:0) were present in TAGs of the seed oil of the transgenics. The total oil content and germination rate of the transgenic seeds were not affected. Analysis of positions of these two fatty acyl moieties in TAGs indicated that they were present at the sn-1 and sn-3 positions, but not sn-2, on the TAGs. Suppression of the camelina KASII genes by RNAi constructs led to higher accumulation of palmitate (C16:0), from 7.5% up to 28.5%, and further reduction of longer, unsaturated fatty acids in seed TAGs. Co-transformation of camelina with both constructs resulted in enhanced accumulation of all three medium-chain, saturated fatty acids in camelina seed oils. Our results show that a California bay gene can be successfully used to modify the oil composition in camelina seed and present a new biological alternative for jet fuel production.

09 BIOMASS FUELS↗

Accurately estimating and minimizing costs for the cellulosic biomass supply chain with statistical process control and the Taguchi Loss Function

This research focuses on the statistical evaluation of the feedstock attributes of the biomass supply chain and the estimation of attribute costs as a function of the feedstock variability. Challenges of using cellulosic feedstocks include the variability of feedstock quality (e.g., ash content and moisture content), which impacts the final cost of the manufactured product. Statistical Process Control (SPC), Taguchi Loss Function, and components of variance techniques were illustrated for quantifying cumulative variance in the biomass supply chain. Costs in the presence of cumulative variance were estimated for switchgrass (Panicum virgatum L.) and loblolly pine residues (Pinus taeda L.). Findings of the study indicated that additional costs from ash content variability in switchgrass increased the net cost by $\$19.15$ per dry tonne. Additional costs from densification due to particle size variation increased net cost by $\$11.59$ per dry tonne. Moisture content variation increased costs by $\$14.86$ per dry tonne. This would represent a 50 to 100% increase in costs due to variation based on a $\$60$ to $\$70$ per dry tonne manufactured product cost. This study illustrates that total costs may be considerably underestimated if the influence of variance for key factors in the supply chain and associated costs are not estimated.

59 BASIC BIOLOGICAL SCIENCES↗

Elaborating the phase diagram of spin-1 anyonic chains

We revisit the phase diagram of spin-1 su(2)_k s u ( 2 ) k anyonic chains, originally studied by Gils et. al. . These chains possess several integrable points, which were overlooked (or only briefly considered) so far. Exploiting integrability through a combination of algebraic techniques and exact Bethe ansatz results, we establish in particular the presence of new first order phase transitions, a new critical point described by a Z_k Z k parafermionic CFT, and of even more phases than originally conjectured. Our results leave room for yet more progress in the understanding of spin-1 anyonic chains.

Vernier, Eric↗

Chicago Pile-1 paved the way for nuclear science and a lab in Los Alamos First self-sustaining nuclear chain reaction was nearly 80 years ago

On a bitter-cold winter day, 43 scientists gathered at an abandoned squash court at the University of Chicago where they would ultimately enable a secret lab in Los Alamos to change the world just years later. It was December 2, 1942. The group, led by Italian physicist and Nobel laureate Enrico Fermi, stacked graphite bricks, piling 57 layers that totaled more than 770,000 pounds. Later named Chicago Pile-1, their goal was to create the world’s first self-sustaining, controlled nuclear chain reaction. Inside the approximately 20-feet-tall pile were smaller blocks of uranium and control rods that, when removed, would cause the reaction to go critical – meaning create a nuclear chain reaction. It was roughly $1 million worth of materials, equivalent to nearly $16 million today, and a concept that a nuclear chain reaction would allow the weaponization of the atom. “Its success would be the crucial proof needed to know it would be possible to create an atomic bomb,” said LANL Historian Roger Meade (C-NR). “This was the precursor to the Lab we have today, nearly 80 years later.”

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Supply Chain Risk Mitigation for Scientific Facilities and Tools

In November 2021, the U.S. Department of Energy (DOE) Office of Science (SC) convened a roundtable on “Supply Chain Risk Mitigation for Scientific Facilities and Tools” to gather information about current supply chain challenges in key technology areas unique to SC or critical to its mission. The roundtable brought together technical, project management, and procurement experts from DOE national laboratories, industry, academia, and other government agencies. Panelists explored opportunities, possible partnerships, and mechanisms to strengthen the domestic supply chain for critical SC technologies.

99 GENERAL AND MISCELLANEOUS↗

America's Strategy to Secure the Supply Chain for a Robust Clean Energy Transition

The opportunity for U.S. global leadership on clean energy is enormous. On February 24, 2021, President Biden issued Executive Order 14017, “America’s Supply Chains,” directing the Secretary of Energy to submit a supply chain strategy overview report for the Energy Sector Industrial Base (ESIB). This report lays out the myriad challenges and opportunities facing the energy supply chain along with key strategies to secure America’s position as a clean energy superpower in the years and decades to come.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Semiconductor: Supply Chain Deep Dive Assessment

In February 2021, President Biden signed Executive Order (EO) 14017, “America’s Supply Chains,” directing seven executive agencies to evaluate the resilience and security of the nation’s critical supply chains and to craft strategies for six industrial bases that underpin America’s economic and national security. See Sec. 3(b) of E.O. 14017. As part of the one-year response to EO 14017, the U.S. Department of Energy (DOE), through the national laboratories, conducted evaluations of the supply chains that encompass the Energy Sector Industrial Base, with a particular focus on technologies required to decarbonize the U.S. by 2050. This report focuses on one of these technologies, semiconductors, both conventional and wide bandgap (WBG) power electronics (PE). As noted in the 100-Day report, conventional semiconductors are a keystone technology that are essential for the operation of nearly every electronic device, including those that are critical to decarbonization, such as electric vehicles (EVs), industrial and building applications, and electricity generation and end use. In addition, power electronics have been applied to industrial equipment to improve energy efficiency and enhance controllability. Power electronics have also been used to improve the reliability of data centers and critical infrastructure, including the stabilization of the electric grid while subjected to disturbances. Increasingly, power electronics are being used to integrate renewable energy and battery storage systems, enabling new grid services and the development of microgrids. It is estimated that 30% of the electricity used in the U.S. passes through power electronic devices, and studies suggest that this number could reach 80% as power electronics are deployed in more markets. Nearly all forms of electrified transportation will depend on power electronics. Power electronic systems utilize high-capacity semiconductor devices at their core. The continued growth in power electronics depends on sustained innovation in the semiconductor industry.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗