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At least 757 records · Page 42

Aurorasaurus Database of Real-Time, Crowd-Sourced Aurora Data for Space Weather Research

This technical report documents the details of Aurorasaurus citizen science data for the period spanning 2015 and 2016 as well as its routine data filtering protocols. Aurorasaurus citizen science data is a collection of auroral sightings submitted to the project via its website or apps and mined from social media. It is a robust data set and particularly abundant during strong geomagnetic storms when auroral precipitation models have the highest uncertainty. These data are offered to the scientific community for use through an openaccess database in its raw and scientific formats, each of which is described in detail in this technical report. Furthermore, by demonstrating its scientific utility, we aim to encourage its integration into auroral research.

Citizen science↗

Enabling Earth Science Through Cloud Computing

Cloud Computing holds tremendous potential for missions across the National Aeronautics and Space Administration. Several flight missions are already benefiting from an investment in cloud computing for mission critical pipelines and services through faster processing time, higher availability, and drastically lower costs available on cloud systems. However, these processes do not currently extend to general scientific algorithms relevant to earth science missions. The members of the Airborne Cloud Computing Environment task at the Jet Propulsion Laboratory have worked closely with the Carbon in Arctic Reservoirs Vulnerability Experiment (CARVE) mission to integrate cloud computing into their science data processing pipeline. This paper details the efforts involved in deploying a science data system for the CARVE mission, evaluating and integrating cloud computing solutions with the system and porting their science algorithms for execution in a cloud environment.

science data system↗

Radioastron flight operations

Radioastron is a space-based very-long-baseline interferometry (VLBI) mission to be operational in the mid-90's. The spacecraft and space radio telescope (SRT) will be designed, manufactured, and launched by the Russians. The United States is constructing a DSN subnet to be used in conjunction with a Russian subnet for Radioastron SRT science data acquisition, phase link, and spacecraft and science payload health monitoring. Command and control will be performed from a Russian tracking facility. In addition to the flight element, the network of ground radio telescopes which will be performing co-observations with the space telescope are essential to the mission. Observatories in 39 locations around the world are expected to participate in the mission. Some aspects of the mission that have helped shaped the flight operations concept are: separate radio channels will be provided for spacecraft operations and for phase link and science data acquisition; 80-90 percent of the spacecraft operational time will be spent in an autonomous mode; and, mission scheduling must take into account not only spacecraft and science payload constraints, but tracking station and ground observatory availability as well. This paper will describe the flight operations system design for translating the Radioastron science program into spacecraft executed events. Planning for in-orbit checkout and contingency response will also be discussed.

Altunin, V. I.↗

Data Preservation, Information Preservation, and Lifecyle of Information Management at NASA GES DISC

Data lifecycle management awareness is common today; planners are more likely to consider lifecycle issues at mission start. NASA remote sensing missions are typically subject to life cycle management plans of the Distributed Active Archive Center (DAAC), and NASA invests in these national centers for the long-term safeguarding and benefit of future generations. As stewards of older missions, it is incumbent upon us to ensure that a comprehensive enough set of information is being preserved to prevent the risk for information loss. This risk is greater when the original data experts have moved on or are no longer available. Preservation of items like documentation related to processing algorithms, pre-flight calibration data, or input-output configuration parameters used in product generation, are examples of digital artifacts that are sometimes not fully preserved. This is the grey area of information preservation; the importance of these items is not always clear and requires careful consideration. Missing important metadata about intermediate steps used to derive a product could lead to serious challenges in the reproducibility of results or conclusions. Organizations are rapidly recognizing that the focus of life-cycle preservation needs to be enlarged from the strict raw data to the more encompassing arena of information lifecycle management. By understanding what constitutes information, and the complexities involved, we are better equipped to deliver longer lasting value about the original data and derived knowledge (information) from them. The NASA Earth Science Data Preservation Content Specification is an attempt to define the content necessary for long-term preservation. It requires new lifecycle infrastructure approach along with content repositories to accommodate artifacts other than just raw data. The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) setup an open-source Preservation System capable of long-term archive of digital content to augment its raw data holding. This repository is being used for such missions as HIRDLS, UARS, TOMS, OMI, among others. We will provide a status of this implementation; report on challenges, lessons learned, and detail our plans for future evolution to include other missions and services.

data management↗

DSI Python API Demo May 2023 [Slides]

Data Science Infrastructure (DSI) is developing searchable databases and workflows for simulation and experimental data derived from ASC clients. Short term goal: Make data easily accessible through metadata indexing and querying while respecting data permissions. Longer term goal: Use this data for data science activities.

97 MATHEMATICS AND COMPUTING↗

New developments in space radiation research at NASA: Annotating data using a novel radiation biology ontology

Like many interdisciplinary sciences, data producers and consumers in the field of radiation biology often use a wide variety of terminology to describe their experiments and data. Furthermore, space systems and technologies are rapidly evolving, and a shared understanding and common terminology for these is also lacking. The efficiency of research organizations can be enhanced by standardizing metadata through the use of knowledge resources like ontologies. Employing a sophisticated model such as a formal ontology to standardize metadata enables automated data acquisition processes and supports more complete, accurate meta-analysis through more efficient and complete data discovery and retrieval, particularly when using multiple data sources. Thus, we developed the Radiation Biology Ontology (RBO) in order to improved radiation biology metadata uniformity and transparency. We used open-source software (the Ontology Development Kit, Protégé and WebProtégé) and worked within the OBO Foundry framework, which includes a set of ontology development principles and practices for ontology consistency, uniformity, and accountability. The RBO has now been incorporated into two radiation research data repositories, NASA’s GeneLab omics database (https://genelab.nasa.gov), and the European Commission STORE database (https://www.storedb.org/). Continuous build integration tools allowed our international RBO collaboration to be more efficient and focus its efforts on semantic model design. Currently, the RBO contains over 300 annotated classes and individuals specific to the study of radiation on biological systems, as well as imports of many additional classes from other OBO Foundry ontologies that relate to and/or provide context for these RBO entities. We publish the RBO through the OBO Foundry, so that it is available for browsing, download, and querying through NCBI Bioportal web site and application programming interface. The NASA Ames Life Science Data Archive (ALSDA) is also in the process of adopting use of the RBO, taking NASA one step closer to a knowledge-based system for space biology data. It is our hope that the global communities of radiation research Investigators, data curators and data analysts can similarly leverage the RBO and will contribute to its further development.

radiation↗

Elevating the Quality of Space Omics Sequencing Data: Innovations and Methodologies from NASA GeneLab Sample Processing Laboratory

NASA’s GeneLab, part of the NASA Open Science Data Repository, is a space-related database that hosts a diverse range of transcriptomics, proteomics, epigenomics and genomics data. The NASA GeneLab Sample Processing Laboratory (SPL) generates omics data from biological experiments conducted aboard the International Space Station, Space Shuttle and space related ground experiments, this omics data then hosted on the GeneLab repository. Samples generated such experiments pose numerous technical challenges such as small experimental sample size, variance in dissection times, limited tissue preservation methods, prolonged storage time, and more. GeneLab SPL team had developed specialized expertise in nucleic acid extraction, library preparation and sequencing of such biological samples via extensive training and years of experience. In order to ensure data accuracy and consistency across experiments, SPL has developed standardized protocols for each species and tissue type. These protocols in conjunction with quality control metrics and data standards are crucial in generating of high-quality data. SPL protocols and standards have been developed in collaboration with the scientific community and had been made publicly available on the GeneLab portal, guaranteeing comparability of datasets across spaceflight experiments. To ensure reliability of data generation, SPL leverages cutting-edge innovations in laboratory automation for sample processing. By leveraging these state-of-the-art platforms, SPL achieves high levels of data reproducibility while significantly minimizing sources of bias and variability, especially across experiments with large numbers of samples. Over the past few years, the space biology investigator community has accessed SPL-generated data from the Open Science Data Repository for a myriad of data re-analysis and re-use studies. We observe a trend that in-house SPL-generated data consistently outperforms outsourced sequencing data in terms of technical standards, quality control metrics, timeliness of data delivery, and sequencing and reagent efficiency. Superior data generation has and will continue to enable discoveries in disease, diagnostic tools, and the biological effects of long duration spaceflight.

GeneLab↗

Elevating the Quality of Space Omics Sequencing Data: Innovations and Methodologies from NASA GeneLab Sample Processing Laboratory

NASA’s GeneLab, part of the NASA Open Science Data Repository, is a space-related database that hosts a diverse range of transcriptomics, proteomics, epigenomics and genomics data. The NASA GeneLab Sample Processing Laboratory (SPL) generates omics data from biological experiments conducted aboard the International Space Station, Space Shuttle and space related ground experiments, this omics data then hosted on the GeneLab repository. Samples generated such experiments pose numerous technical challenges such as small experimental sample size, variance in dissection times, limited tissue preservation methods, prolonged storage time, and more. GeneLab SPL team had developed specialized expertise in nucleic acid extraction, library preparation and sequencing of such biological samples via extensive training and years of experience. In order to ensure data accuracy and consistency across experiments, SPL has developed standardized protocols for each species and tissue type. These protocols in conjunction with quality control metrics and data standards are crucial in generating of high-quality data. SPL protocols and standards have been developed in collaboration with the scientific community and had been made publicly available on the GeneLab portal, guaranteeing comparability of datasets across spaceflight experiments. To ensure reliability of data generation, SPL leverages cutting-edge innovations in laboratory automation for sample processing. By leveraging these state-of-the-art platforms, SPL achieves high levels of data reproducibility while significantly minimizing sources of bias and variability, especially across experiments with large numbers of samples. Over the past few years, the space biology investigator community has accessed SPL-generated data from the Open Science Data Repository for a myriad of data re-analysis and re-use studies. We observe a trend that in-house SPL-generated data consistently outperforms outsourced sequencing data in terms of technical standards, quality control metrics, timeliness of data delivery, and sequencing and reagent efficiency. Superior data generation has and will continue to enable discoveries in disease, diagnostic tools, and the biological effects of long duration spaceflight.

GeneLab↗

Bioinformatic teaching resources - for educators, by educators - using KBase, a free, user-friendly, open source platform

Over the past year, biology educators and staff at the Department of Energy Systems Biology Knowledgebase (KBase) initiated a collaborative effort to develop a curriculum for bioinformatics education. KBase is a free and easily accessible data science platform that integrates many bioinformatics resources into a graphical user interface built upon reproducible analysis notebooks. KBase held conversations with college and high school instructors to understand how KBase could potentially support their educational goals. These conversations morphed into a working group of biological and data science instructors that adapted the KBase platform to their curriculum needs, specifically around concepts in Genomics, Metagenomics, Pangenomics, and Phylogenetics. The KBase Educators Working Group developed modular, adaptable, and customizable instructional units. Each instructional module contains teaching resources, publicly available data, analysis tools, and markdown capability to tailor instructions and learning goals for each class. The online user interface enables students to conduct hands-on data science research and analyses without requiring programming skills or their own computational resources (these are provided by KBase). Alongside these resources, KBase continues to work with instructors, supporting the development of additional curriculum modules. For anyone new to the platform, KBase, and the growing KBase Educators Organization, provides a community network, accompanied by community-sourced guidelines, instructional templates, and peer support to use KBase within a classroom whether virtual or in-person.

59 BASIC BIOLOGICAL SCIENCES↗

Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences

Physical samples are foundational entities for research across biological, Earth, and environmental sciences. Data generated from sample-based analyses are not only the basis of individual studies, but can also be integrated with other data to answer new and broader-scale questions. Ecosystem studies increasingly rely on multidisciplinary team-science to study climate and environmental changes. While there are widely adopted conventions within certain domains to describe sample data, these have gaps when applied in a multidisciplinary context. In this study, we reviewed existing practices for identifying, characterizing, and linking related environmental samples. We then tested practicalities of assigning persistent identifiers to samples, with standardized metadata, in a pilot field test involving eight United States Department of Energy projects. Participants collected a variety of sample types, with analyses conducted across multiple facilities. We address terminology gaps for multidisciplinary research and make recommendations for assigning identifiers and metadata that supports sample tracking, integration, and reuse. Furthermore, our goal is to provide a practical approach to sample management, geared towards ecosystem scientists who contribute and reuse sample data.

54 ENVIRONMENTAL SCIENCES↗

Data Albums: An Event Driven Search, Aggregation and Curation Tool for Earth Science

One of the largest continuing challenges in any Earth science investigation is the discovery and access of useful science content from the increasingly large volumes of Earth science data and related information available. Approaches used in Earth science research such as case study analysis and climatology studies involve gathering discovering and gathering diverse data sets and information to support the research goals. Research based on case studies involves a detailed description of specific weather events using data from different sources, to characterize physical processes in play for a specific event. Climatology-based research tends to focus on the representativeness of a given event, by studying the characteristics and distribution of a large number of events. This allows researchers to generalize characteristics such as spatio-temporal distribution, intensity, annual cycle, duration, etc. To gather relevant data and information for case studies and climatology analysis is both tedious and time consuming. Current Earth science data systems are designed with the assumption that researchers access data primarily by instrument or geophysical parameter. Those who know exactly the datasets of interest can obtain the specific files they need using these systems. However, in cases where researchers are interested in studying a significant event, they have to manually assemble a variety of datasets relevant to it by searching the different distributed data systems. In these cases, a search process needs to be organized around the event rather than observing instruments. In addition, the existing data systems assume users have sufficient knowledge regarding the domain vocabulary to be able to effectively utilize their catalogs. These systems do not support new or interdisciplinary researchers who may be unfamiliar with the domain terminology. This paper presents a specialized search, aggregation and curation tool for Earth science to address these existing challenges. The search tool automatically creates curated "Data Albums", aggregated collections of information related to a specific science topic or event, containing links to relevant data files (granules) from different instruments; tools and services for visualization and analysis; and information about the event contained in news reports, images or videos to supplement research analysis. Curation in the tool is driven via an ontology based relevancy ranking algorithm to filter out non-relevant information and data.

Ramachandran, Rahul↗

Radio science ground data system for the Voyager-Neptune encounter, part 1

The Voyager radio science experiments at Neptune required the creation of a ground data system array that includes a Deep Space Network complex, the Parkes Radio Observatory, and the Usuda deep space tracking station. The performance requirements were based on experience with the previous Voyager encounters, as well as the scientific goals at Neptune. The requirements were stricter than those of the Uranus encounter because of the need to avoid the phase-stability problems experienced during that encounter and because the spacecraft flyby was faster and closer to the planet than previous encounters. The primary requirement on the instrument was to recover the phase and amplitude of the S- and X-band (2.3 and 8.4 GHz) signals under the dynamic conditions encountered during the occultations. The primary receiver type for the measurements was open loop with high phase-noise and frequency stability performance. The receiver filter bandwidth was predetermined based on the spacecraft's trajectory and frequency uncertainties.

Kursinski, E. R.↗

A Case Study Comparing Citizen Science Aurora Data with Global Auroral Boundaries Derived from Satellite Imagery and Empirical Models

Aurorasaurus is a citizen science project that offers a new, global data source consisting of ground-based reports of the aurora. For this case study, aurora data collected during the 17-18 March 2015 geomagnetic storm are examined to identify their conjunctions with Defense Meteorological Satellite Program (DMSP) satellite passes over the high latitude auroral regions. This unique set of aurora data can provide ground-truth validation of existing auroral precipitation models. Particularly, the solar wind driven, Oval Variation, Assessment, Tracking, Intensity, and Online Nowcasting (OVATION) Prime 2013 (OP-13) model and a Kp-dependent model of Zhang-Paxton (Z-P) are utilized for our boundary validation efforts. These two similar models are compared for the first time. Global equatorward auroral boundaries are derived from the OP 13 model and the DMSP Special Sensor Ultraviolet Spectrographic Imager (SSUSI) far ultraviolet (FUV) data using the Z-P model at a fixed flux level of 0.2 erg cm(exp -2)s(exp -1). These boundaries are then compared with citizen science reports as well as with each other. Even though there are some large differences between the global boundaries for a few cases, the average difference is about 1.5 deg in geomagnetic latitude, with OP-13 being equatorward of Z-P model. When these boundaries are compared with each other as a function of local time, no clear overall trend as a function of local time was observed. It is also found that the ground based reports are more consistent with the predictions of the OP-13 model.

Kosar, Burcu C.↗

User Scientific Data Systems: Experience Report

This paper presents an abbreviated history of NASA science data management system development over the past ten years by selecting two case studies, each representative of a distinct era of science data management systems.

Scientific Data↗

The 1990 annual statistics and highlights report

The National Space Science Data Center (NSSDC) has archived over 6 terabytes of space and Earth science data accumulated over nearly 25 years. It now expects these holdings to nearly double every two years. The science user community needs rapid access to this archival data and information about data. The NSSDC has been set on course to provide just that. Five years ago the NSSDC came on line, becoming easily reachable for thousands of scientists around the world through electronic networks it managed and other international electronic networks to which it connected. Since that time, the data center has developed and implemented over 15 interactive systems, operational nearly 24 hours per day, and is reachable through DECnet, TCP/IP, X25, and BITnet communication protocols. The NSSDC is a clearinghouse for the science user to find data needed through the Master Directory system whether it is at the NSSDC or deposited in over 50 other archives and data management facilities around the world. Over 13,000 users accessed the NSSDC electronic systems, during the past year. Thousands of requests for data have been satisfied, resulting in the NSSDC's sending out a volume of data last year that nearly exceeded a quarter of its holdings. This document reports on some of the highlights and distribution statistics for most of the basic NSSDC operational services for fiscal year 1990. It is intended to be the first of a series of annual reports on how well NSSDC is doing in supporting the space and Earth science user communities.

Green, James L.↗

Introduction to Air Traffic Management

The presentation introduces students and faculty to air traffic management with focus on air traffic data for data-science. Starting with the common attributes of transportation systems — highway transportation, air transportation and data transportation, the initial set of slides discuss the purpose of data-science in air traffic management, reasons why air traffic management is challenging, and the multidisciplinary nature of air traffic management research. The history of flight from 1903 — Wright Flyer — to 1987 — formation of the National Air Traffic Controllers Association — is briefly discussed. The national airspace system is described in terms of airports in the U. S., air traffic control facilities (flight service stations, terminal, enroute and system command center), airspace geometry (sectors, airways and navaids), governing regulations and directives, airspace classification (Class A through G), special use airspace, visual flight rules and instrument flight rules. The contents of a flight-plan are described. Weather briefing is discussed. The surveillance equipment used for surface, terminal area and enroute are described, and the aircraft states obtained using the surveillance data are listed. Airline operations control functions — schedule development, flight planning, resource scheduling and flight following — are noted. Next, the roles and responsibilities of air traffic controllers and traffic flow managers are discussed. Separation standards and conflict resolution techniques are outlined. Finally, traffic flow management techniques are reviewed with an illustrative example.

Air Traffic Management↗