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SAND2021-0503 O The epi_inference software supports the prediction of disease transmission parameters from data. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.
baseflow is a MATLAB® toolbox designed for baseflow recession analysis, a technique used in hydrologic science to infer aquifer properties from streamflow. By leveraging widely available streamflow data, baseflow can be used to estimate aquifer properties such as hydraulic conductivity and drainable porosity over the modern instrumental stream gage record. The toolbox is intended for analysis of measured streamflow values recorded on a daily timestep, and is tailored for shallow, unconfined riparian aquifers that discharge groundwater laterally into adjacent streams. Additionally, baseflow can analyze the collective behavior of individual hillslope aquifers constituting hydrologic catchments, known as “watersheds”, from a nonlinear dynamical systems perspective. The toolbox incorporates recent advances in baseflow recession analysis to enable objective estimations of aquifer properties, and their sensitivity to methodological decisions, at both hillslope and catchment scales.
Inverse problems, which aim to infer unknown properties of a system using experimental and observational data, are central to addressing many of the U.S. Department of Energy’s (DOE) most critical scientific and engineering challenges. Accurate, computationally efficient, and data-efficient solutions to inverse problems are essential for advancing DOE mission-critical science drivers, including analyzing data from large-scale experimental facilities, optimizing fusion reactor performance, accelerating materials discovery, enhancing geophysical imaging, improving wildfire predictions, and enabling autonomous systems and digital twins. However, these problems are becoming increasingly complex, often involving nonlinear, highdimensional, and interconnected systems and models that span multiple physics and scales, while relying on data with varying quantity, quality, and information content. Compounding these challenges is the uncertainty inherent in DOE-relevant systems, where errors in inputs, noise in data, incompleteness of data, and discrepancies between models and reality constrain the accuracy and precision of solutions. At the same time, the convergence of recent scientific computing trends—scientific machine learning, artificial intelligence, and computing advances such as exascale computing—is creating unprecedented opportunities for tackling these challenges. The cross-cutting nature of inverse problems, combined with their growing complexity and rapidly evolving data and algorithmic demands, strongly motivates the formulation of a prioritized research agenda to maximize their capabilities and impact. In response to this need, DOE’s Advanced Scientific Computing Research (ASCR) program in the Office of Science convened the Workshop on Basic Research Needs for Inverse Problems for Complex Systems Under Uncertainty in June 2025. This workshop brought together experts across disciplines to identify grand challenges and major opportunities in the field. Through collaborative discussions, the workshop defined transformative research directions aimed at addressing the mathematical, statistical, and computational challenges posed by inverse problems under uncertainty. As a result of these efforts, four priority research directions (PRDs) were identified to guide future research and development in this area. These PRDs, summarized below, represent a roadmap for advancing the foundational science and mathematics of inverse problems, enabling robust, scalable, and uncertainty-aware solutions that are critical for DOE applications.
I show how to compute the nonlinear power spectrum across the entire $w(z)$ dynamical dark energy model space. Using synthetic ΛCDM data, I train a neural ordinary differential equation (ODE) to infer the evolution of the nonlinear matter power spectrum as a function of the background expansion and mean matter density across ∼9 Gyr of cosmic evolution. After training, the model generalises to any dynamical dark energy model parameterised by $w(z)$. With little optimisation, the neural ODE is accurate to within 4% up to $k = 5\, h\, {\mathrm Mpc}^{−1}$. Unlike simulation rescaling methods, neural ODEs naturally extend to summary statistics beyond the power spectrum that are sensitive to the growth history.
Although unique expected energy models can be generated for a given photovoltaic (PV) site, a standardized model is also needed to facilitate performance comparisons across fleets. Current standardized expected energy models for PV work well with sparse data, but they have demonstrated significant over-estimations, which impacts accurate diagnoses of field operations and maintenance issues. This research addresses this issue by using machine learning to develop a data-driven expected energy model that can more accurately generate inferences for energy production of PV systems. Irradiance and system capacity information was used from 172 sites across the United States to train a series of models using Lasso linear regression. The trained models generally perform better than the commonly used expected energy model from international standard (IEC 61724-1), with the two highest performing models ranging in model complexity from a third-order polynomial with 10 parameters (Radj2 = 0.994) to a simpler, second-order polynomial with 4 parameters (Radj2=0.993), the latter of which is subject to further evaluation. Subsequently, the trained models provide a more robust basis for identifying potential energy anomalies for operations and maintenance activities as well as informing planning-related financial assessments. We conclude with directions for future research, such as using splines to improve model continuity and better capture systems with low (≤1000 kW DC) capacity.
Abstract Modern surveys of gravitational microlensing events have progressed to detecting thousands per year, and surveys are capable of probing Galactic structure, stellar evolution, lens populations, black hole physics, and the nature of dark matter. One of the key avenues for doing this is the microlensing Einstein radius crossing time (t E) distribution. However, systematics in individual light curves as well as oversimplistic modeling can lead to biased results. To address this, we developed a model to simultaneously handle the microlensing parallax due to Earth's motion, systematic instrumental effects, and unlensed stellar variability with a Gaussian process model. We used light curves for nearly 10,000 OGLE-III and -IV Milky Way bulge microlensing events and fit each with our model. We also developed a forward model approach to infer the t E distribution by forward modeling from the data rather than using point estimates from individual events. We find that modeling the variability in the baseline removes a source of significant bias in individual events, and the previous analyses overestimated the number of t E > 100 day events due to their oversimplistic model ignoring parallax effects. We use our fits to identify the hundreds filling a regime in the microlensing parameter space that are 50% pure of black holes. Finally, we have released the largest-ever catalog of Markov Chain Monte Carlo parameter estimates for microlensing events.
Membership inference attacks (MIAs), which enable adversaries to determine whether specific data points were part of a model's training dataset, have emerged as an important framework to understand, assess, and quantify the potential information leakage associated with machine learning systems. Designing effective MIAs is a challenging task that usually requires extensive manual exploration of model behaviors to identify potential vulnerabilities. In this paper, we introduce AutoMIA -- a novel framework that leverages large language model (LLM) agents to automate the design and implementation of new MIA signal computations. By utilizing LLM agents, we can systematically explore a vast space of potential attack strategies, enabling the discovery of novel strategies. Our experiments demonstrate AutoMIA can successfully discover new MIAs that are specifically tailored to user-configured target model and dataset, resulting in improvements of up to 0.18 in absolute AUC over existing MIAs. This work provides the first demonstration that LLM agents can serve as an effective and scalable paradigm for designing and implementing MIAs with SOTA performance, opening up new avenues for future exploration.
The Basin-Scale Structural Features database provides spatial datasets of faults, fractures, folds, and earthquakes compiled from public, authoritative sources (e.g., U.S. Geological Survey and State Geological Surveys) and aggregated into derivative forms to support subsurface assessments. Recognizing that characterizing basin-scale structural features requires interpreting data that are often ambiguous or lack key information, the source data were evaluated using a knowledge-data framework and geospatial fuzzy logic method (Justman et al., 2020) to represent both measured (observed) and predicted (inferred or potential) structural features as derivative datasets. This workflow employs conceptual models for known structural features and predicted structural features, incorporating geospatial data to estimate potential, even with limited data. The aim is to aid and support an understanding of basin-scale features and identify potential gaps in data and knowledge. As of 4/30/2025, the database includes resources for nine sedimentary basins: Appalachian, Denver, U.S. Gulf Coast, Illinois, Michigan, Permian, Sacramento, San Joquin and Williston. The database is organized by basin and then data category: 1) Faults, fractures, folds, 2) Earthquakes, 3) Topographic, 4) Structural contours and isopachs, 5) Geophysical, and 6) Structural feature density assessment maps.
A predictive, self-consistent integrated model of the tokamak edge plasma and neutral system has been developed and validated against experimental data from DIII-D, spanning from the divertor target and scrape-off layer to the top of the pedestal. The model uses the SOLPS-ITER fluid boundary plasma and neutral code to constrain the EPED prediction of the pedestal height and width by taking the separatrix temperature and density calculated from SOLPS as inputs to EPED. An empirical proxy function based on data from a subset of these discharges is then used to infer the ratio of density at the pedestal top to that at the separatrix based on the electron temperature at the divertor target. This allows the density at the top of the pedestal to be provided to EPED as well, so that knowledge of this quantity is no longer required a priori, while SOLPS radial transport coefficients are needed instead. The gas puff rate provided to SOLPS is then a primary model input for this forward model coupling (along with radial transport coefficients, which are kept fixed through each scan in this study). Comparisons with measurements from DIII-D density scans through a range of target conditions find significant pedestal pressure degradation as the density is increased towards detachment in three different divertor configurations, consistent with the experimental data in these ballooning-limited pedestal regimes.
High-resolution, spatially distributed process-based (PB) simulators are widely employed in the study of complex catchment processes and their responses to a changing climate. However, calibrating these PB simulators using observed data remains a significant challenge due to several persistent issues, including the following: (1) intractability stemming from the computational demands and complex responses of simulators, which renders infeasible calculation of the conditional probability of parameters and data, and (2) uncertainty stemming from the choice of simplified representations of complex natural hydrologic processes. Here, we demonstrate how simulation-based inference (SBI) can help address both of these challenges with respect to parameter estimation. SBI uses a learned mapping between the parameter space and observed data to estimate parameters for the generation of calibrated simulations. To demonstrate the potential of SBI in hydrologic modeling, we conduct a set of synthetic experiments to infer two common physical parameters – Manning's coefficient and hydraulic conductivity – using a representation of a snowmelt-dominated catchment in Colorado, USA. We introduce novel deep-learning (DL) components to the SBI approach, including an “emulator” as a surrogate for the PB simulator to rapidly explore parameter responses. We also employ a density-based neural network to represent the joint probability of parameters and data without strong assumptions about its functional form. While addressing intractability, we also show that, if the simulator does not represent the system under study well enough, SBI can yield unreliable parameter estimates. Approaches to adopting the SBI framework for cases in which multiple simulator(s) may be adequate are introduced using a performance-weighting approach. The synthetic experiments presented here test the performance of SBI, using the relationship between the surrogate and PB simulators as a proxy for the real case.
Semi-analytic modelling furnishes an efficient avenue for characterizing dark matter haloes associated with satellites of Milky Way-like systems, as it easily accounts for uncertainties arising from halo-to-halo variance, the orbital disruption of satellites, baryonic feedback, and the stellar-to-halo mass (SMHM) relation. We use the SatGen semi-analytic satellite generator, which incorporates both empirical models of the galaxy–halo connection as well as analytic prescriptions for the orbital evolution of these satellites after accretion onto a host to create large samples of Milky Way-like systems and their satellites. By selecting satellites in the sample that match observed properties of a particular dwarf galaxy, we can infer arbitrary properties of the satellite galaxy within the cold dark matter paradigm. For the Milky Way’s classical dwarfs, we provide inferred values (with associated uncertainties) for the maximum circular velocity v max and the radius r max at which it occurs, varying over two choices of baryonic feedback model and two prescriptions for the SMHM relation. While simple empirical scaling relations can recover the median inferred value for v max and r max , this approach provides realistic correlated uncertainties and aids interpretability. We also demonstrate how the internal properties of a satellite’s dark matter profile correlate with its orbit, and we show that it is difficult to reproduce observations of the Fornax dwarf without strong baryonic feedback. Furthermore, the technique developed in this work is flexible in its application of observational data and can leverage arbitrary information about the satellite galaxies to make inferences about their dark matter haloes and population statistics.
In this paper we demonstrate direct data streaming from instruments and detectors at a large-scale experimental facility to a supercomputer for real-time data processing and feedback. Streaming data to supercomputers introduces the potential for novel scientific applications and workflow models, including the ability to provide real-time feedback from very large datasets during an experiment and the integration of real-time ML training and inference at scale. We discuss a successful demonstration for real-time processing of data from the Advanced Photon Source (APS) on the Polaris supercomputer using an EPICS-based streaming framework. We describe the capabilities of the streaming framework itself, and outline the architecture that allows us to process experimentally derived data on a supercomputer without file-based data transfers. We present throughput measurements that are indicative of system performance capable of sustaining the expected data production rates of the facility, as well as discuss some outstanding challenges and our future directions.
The observation of neutron star mergers with gravitational waves (GWs) has provided a new method to constrain the dense-matter equation of state (EOS) and to better understand its nuclear physics. However, inferring nuclear microphysics from GW observations necessitates the sampling of EOS model parameters that serve as input for each EOS used during the GW data analysis. The sampling of the EOS parameters requires solving the Tolman–Oppenheimer–Volkoff (TOV) equations a large number of times—a process that slows down each likelihood evaluation in the analysis on the order of a few seconds. Here, we employ emulators for the TOV equations built using multilayer perceptron neural networks to enable direct inference of nuclear EOS parameters from GW strain data. Our emulators allow us to rapidly solve the TOV equations, taking in EOS parameters and outputting the associated tidal deformability of a neutron star in only a few tens of milliseconds. We implement these emulators in PyCBC to directly infer the EOS parameters using the event GW170817, providing posteriors on these parameters informed solely by GWs. We benchmark these runs against analyses performed using the full TOV solver and find that the emulators achieve speed ups of nearly two orders of magnitude, with negligible differences in the recovered posteriors. Additionally, we constrain the slope and curvature of the symmetry energy at the 90% upper credible interval to be $L$ sym ≲ 106 MeV and $K$ sym ≲ 26 MeV.
Genome-based data is helping to reveal the diverse strategies plants and algae use to maintain metal homeostasis. In addition to acquisition, distribution and storage of metals, acclimating to feast or famine can involve a wealth of genes that we are just now starting to understand. The fast-paced acquisition of genome-based data, however, is far outpacing our ability to experimentally characterize protein function. Computational genomic approaches are needed to fill the gap between what is known and unknown. To avoid misconstruing bioinformatically derived data, which is the root cause of the inaccurate functional annotations that plague databases, functional inferences from diverse sources and contextualization of that evidence with a robust understanding of protein family evolution is needed. Phylogenomic- and comparative-genomic-based studies can aid in the interpretation of experimental data or provide a spark for the discovery of a new function. These analyses not only lead to novel insight into a target protein's function but can generate thought-provoking insights across protein families.
During an early period of the Coronavirus Disease 2019 (COVID-19) pandemic, the Navajo Nation, much like New York City, experienced a relatively high rate of disease transmission. Yet, between January and October 2020, it experienced only a single period of growth in new COVID-19 cases, which ended when cases peaked in May 2020. The daily number of new cases slowly decayed in the summer of 2020 until late September 2020. In contrast, the surrounding states of Arizona, Colorado, New Mexico, and Utah all experienced at least two periods of growth in the same time frame, with second surges beginning in late May to early June. Here, we investigated these differences in disease transmission dynamics with the objective of quantifying the contributions of non-pharmaceutical interventions (NPIs) (e.g., behaviors that limit disease transmission). We considered a compartmental model accounting for distinct periods of NPIs to analyze the epidemic in each of the five regions. We used Bayesian inference to estimate region-specific model parameters from regional surveillance data (daily reports of new COVID-19 cases) and to quantify uncertainty in parameter estimates and model predictions. Our results suggest that NPIs in the Navajo Nation were sustained over the period of interest, whereas in the surrounding states, NPIs were relaxed, which allowed for subsequent surges in cases. Our region-specific model parameterizations allow us to quantify the impacts of NPIs on disease incidence in the regions of interest.
The outline for this presentation includes: Classical inference (i.e., learning) problems in dynamical systems (through examples), Adjoint state methods, Machine learning for time series data, and Examples characterizing three classes of inference/learning problems.
Abstract Constraining the distribution of small-scale structure in our universe allows us to probe alternatives to the cold dark matter paradigm. Strong gravitational lensing offers a unique window into small dark matter halos (<10 10 M ⊙ ) because these halos impart a gravitational lensing signal even if they do not host luminous galaxies. We create large data sets of strong lensing images with realistic low-mass halos, Hubble Space Telescope (HST) observational effects, and galaxy light from HST’s COSMOS field. Using a simulation-based inference pipeline, we train a neural posterior estimator of the subhalo mass function (SHMF) and place constraints on populations of lenses generated using a separate set of galaxy sources. We find that by combining our network with a hierarchical inference framework, we can both reliably infer the SHMF across a variety of configurations and scale efficiently to populations with hundreds of lenses. By conducting precise inference on large and complex simulated data sets, our method lays a foundation for extracting dark matter constraints from the next generation of wide-field optical imaging surveys.
High-energy-density (HED) experiments in convergent geometry are able to test physical models at pressures beyond hundreds of millions of atmospheres. The measurements from these experiments are generally highly integrated and require unique analysis techniques to procure quantitative infor mation. This work describes a methodology to constrain the physics in convergent HED experiments by adapting the methods common to many other fields of physics. As an example, a mechanical model of an imploding shell is constrained by data from a thin-shelled direct-drive exploding-pusher experiment on the OMEGA Laser System using Bayesian inference, resulting in the reconstruction of the shell dynamics and energy transfer during the implosion. The model is tested by analyzing synthetic data from a 1-D hydrodynamics code and is sampled using a Markov chain Monte Carlo to generate the posterior distributions of the model parameters. As a result, the goal of this work is to demonstrate a general methodology that can be used to draw conclusions from a wide variety of HED experiments.