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DOE OSTI2014

Parallel Heuristics for Scalable Community Detection

Community detection has become a fundamental operation in numerous graph-theoretic applications. It is used to reveal natural divisions that exist within real world networks without imposing prior size or cardinality constraints on the set of communities. Despite its potential for application, there is only limited support for community detection on large-scale parallel computers, largely owing to the irregular and inherently sequential nature of the underlying heuristics. In this paper, we present parallelization heuristics for fast community detection using the Louvain method as the serial template. The Louvain method is an iterative heuristic for modularity optimization. Originally developed by Blondel et al. in 2008, the method has become increasingly popular owing to its ability to detect high modularity community partitions in a fast and memory-efficient manner. However, the method is also inherently sequential, thereby limiting its scalability to problems that can be solved on desktops. Here, we observe certain key properties of this method that present challenges for its parallelization, and consequently propose multiple heuristics that are designed to break the sequential barrier. Our heuristics are agnostic to the underlying parallel architecture. For evaluation purposes, we implemented our heuristics on shared memory (OpenMP) and distributed memory (MapReduce-MPI) machines, and tested them over real world graphs derived from multiple application domains (internet, biological, natural language processing). Experimental results demonstrate the ability of our heuristics to converge to high modularity solutions comparable to those output by the serial algorithm in nearly the same number of iterations, while also drastically reducing time to solution.

clustering, graph algorithms↗

DOE OSTI2020

Direction-optimizing Label Propagation and its Application for Community Detection

Label Propagation is a machine learning algorithm typically used for classification. It has also been found to be an effective method for detecting communities in networks. It has two attractive features as a community detection method: it has nearly linear runtime and it requires no \textit{a priori} community information. We propose a new Direction Optimizing Label Propagation Algorithm (DOLPA) that relies on the use of {\em frontiers} and alternates between label {\em push} and label {\em pull} operations to enhance the performance of LPA. Specifically, DOLPA has parameters for tuning the processing order of vertices in a graph. This reduces the number of edges visited and improves the quality of solution. We apply DOLPA to community detection and present the design and implementation of the algorithm as well as its shared-memory parallelization using OpenMP. Empirically, we evaluate our algorithm using synthetic graphs as well as real-world networks. Compared with the state-of-art \textit{Parallel Label Propagation} algorithm, we achieve at least two times the F-Score while reducing the runtime by 50\% for synthetic graphs with overlapping communities. We also compare DOLPA against the state-of-art parallel implementation of the Louvain method using the same graphs and show that DOLPA achieves about three times the F-Score at 10\% the runtime. On real-world graphs, we get a speedup of up to $10\times$ using 64 threads.

Liu, X↗

DOE OSTI2020

Engineering roles and identities in the scientific community: toward participatory justice

This paper seeks to examine the roles and identities of engineers constituting one of the fundamental, but a completely indescribable community in modern big science with particle accelerators. Large communities of accelerator and detector specialists, which replaced experimenters and instrumentalists of the middle of the last century, themselves exhibit a complex structure and are divided. However, this division is in turn grounded on the division of those whose activities focus on the phenomena of nature considered independent of human beings and those who design processes and phenomena of an artificial, technical nature. Nevertheless, in terms of their modus operandi and identity, the kinship between engineers and experimental scientists is considerable. I argue that such exclusion of the engineering community from epistemic practices can serve as an example of participatory injustice. As one of the ways to transcend participatory injustice, I suggest that the communities should be encouraged to work together in epistemically tantamount roles while structural hindrances to the mobility between communities need to be alleviated.

Pronskikh, V.↗

DOE OSTI2021

A Community Roadmap for Scientific Workflows Research and Development

The landscape of workflow systems for scientific applications is notoriously convoluted with hundreds of seemingly equivalent workflow systems, many isolated research claims, and a steep learning curve. To address some of these challenges and lay the groundwork for transforming workflows research and development, the WorkflowsRI and ExaWorks projects partnered to bring the international workflows community together. This paper reports on discussions and findings from two virtual “Workflows Community Summits” (January and April, 2021). The overarching goals of these workshops were to develop a view of the state of the art, identify crucial research challenges in the workflows community, articulate a vision for potential community efforts, and discuss technical approaches for realizing this vision. To this end, participants identified six broad themes: FAIR computational workflows; AI workflows; exascale challenges; APIs, interoperability, reuse, and standards; training and education; and building a workflows community. We summarize discussions and recommendations for each of these themes.

Ferreira Da Silva, Rafael↗

DOE OSTI2022

Building a Culture of Equitable Access and Success for Marginalized Members in Today's Particle Physics Community

Diversity, Equity, Inclusion, and Accessibility (DEIA) are not only called for to ensure morality and justice in our society, they also support ongoing and future excellence in particle physics. Over the past decade, the particle physics community has devised programs to support DEIA along multiple axes, and the way we think about measuring and implementing these initiatives has evolved. DEIA in physics is a broad topic, so in this paper we focus on the experiences of marginalized communities and outline ways different stakeholders can build a culture of equitable access for the success of marginalized individuals. Specifically, we identify urgent needs in the following areas: (1) We need to acquire a better understanding of the status quo, both quantitatively and qualitatively, to assess the effectiveness of existing programs and to develop best practices; (2) we need to develop effective and inclusive ways to engage marginalized communities; (3) we need to create infrastructure to better support members of marginalized communities, on an academic, financial and personal level; (4) we need to create an environment conducive to equitable access and success by establishing community expectations, fostering inclusion in social interactions, and holding individuals and institutions accountable; and (5) we need to establish a mechanism to monitor progress in the area of DEIA, including the implementation of the recommendations enumerated in this paper and others during the Snowmass 2021 process.

Assamagan, Kétévi A.↗

DOE OSTI2022

If One GEB is Good, a Community of GEBs is Better

Energy efficient, connected, grid-interactive, smart and flexible buildings are key to decarbonization, lowering energy use and improving the nation’s electricity grid. The U.S. Department of Energy’s Connected Communities initiative works to demonstrate how coordinated groups of highly efficient buildings combined with other distributed energy resources (DERs), such as electric vehicle (EV) charging, batteries, storage, demand response and photovoltaic (PV) generation can reliably and cost-effectively serve as grid assets by strategically deploying efficiency and demand flexibility while reducing carbon emissions. In 2021, DOE competitively awarded $61 million to a diverse portfolio of 10 pilot projects to promote grid-interactive efficient buildings (GEBs) working together to reliably and cost-effectively serve as grid assets while decarbonizing. Two of the main tenets of the program are measuring the communities’ energy and carbon performance and understanding how to replicate project successes in other communities. This paper begins with a discussion of what Connected Communities are (including a brief history) and their many benefits, including reduced carbon emissions and increased building efficiency and demand flexibility. Next, it provides an overview of the 10 projects, highlighting the diversity of approaches to measure success and replicate the projects: geographic locations; building types; utility, regulatory, market environments; and building vintages that will be used to test the ability of buildings to serve as grid resources. It concludes with a discussion of anticipated project impacts and the metrics that will be used to evaluate the Connected Communities projects.

Nemtzow, David↗

DOE OSTI2023

Report of the 2021 U.S. Community Study on the Future of Particle Physics (Snowmass 2021) Summary Chapter

The 2021-22 High-Energy Physics Community Planning Exercise (a.k.a. ``Snowmass 2021'') was organized by the Division of Particles and Fields of the American Physical Society. Snowmass 2021 was a scientific study that provided an opportunity for the entire U.S. particle physics community, along with its international partners, to identify the most important scientific questions in High Energy Physics for the following decade, with an eye to the decade after that, and the experiments, facilities, infrastructure, and R&D needed to pursue them. This Snowmass summary report synthesizes the lessons learned and the main conclusions of the Community Planning Exercise as a whole and presents a community-informed synopsis of U.S. particle physics at the beginning of 2023. This document, along with the Snowmass reports from the various subfields, will provide input to the 2023 Particle Physics Project Prioritization Panel (P5) subpanel of the U.S. High-Energy Physics Advisory Panel (HEPAP), and will help to guide and inform the activity of the U.S. particle physics community during the next decade and beyond.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

Connecting People to Data: Enabling Data Connected Communities through Enhancements to the Geothermal Data Repository: Preprint

The Department of Energy's (DOE) Geothermal Data Repository (GDR) has implemented a series of new features designed to connect people to data. These features, which are based on feedback from the GDR user community and surveys of the greater geothermal research community, are designed to improve data quality and empower members of all communities to better engage with geothermal data resources by providing universal access to data and by improving the connections between data providers, subject matter experts, and the communities of people using GDR data. This paper will explore some of the recent enhancements made to the GDR to improve data discoverability, reduce submission time, and result in better quality data submissions. These improvements include the ability for users to save a list of their favorite datasets, search for insight into geothermal datasets or data availability, or sign up to receive notifications of future updates to specific datasets. These improvements aim to enhance the overall user experience of the GDR while further connecting communities to the data they need to inform decisions, advance geothermal research, and develop innovative solutions to local energy problems.

DOE↗

DOE OSTI2018

Remediation Residential Properties Contaminated with LLRW as Part of the Port Hope Area Initiative - The Importance of Effective Community Consultation - 18591

The Port Hope Area Initiative (PHAI) is a community-based solution for the long-term management of historic low level radioactive waste (LLRW) resulting from 60 years of uranium and radium processing operations in the urban setting of Port Hope, Ontario. The Eldorado refinery, on the shores of Lake Ontario, began refining radium-226 from pitchblende ore, later transitioning to the refining of uranium ore. Process residues were deposited at the Welcome Waste Management Facility in the Municipality of Port Hope until the mid-1950's switching to the Port Granby Waste Management Facility (PGWMF), which continued to accept waste until the late 1980's. Within the community of Port Hope, surveys are being conducted at approximately 4800 individual properties to identify the presence of LLRW resulting from fugitive emissions from the refinery and/or the use of refinery residue as construction backfill within the community. Identification of the presence of LLRW is based on multiple lines of evidence including reviews of historical information, gamma radiation surveys and physical sampling of soil for the presence of four signature contaminants. Of the 4800 properties being surveyed, it is expected that approximately 10% will contain some degree of LLRW requiring physical remediation. Many of the residences requiring remediation will require extensive soil removal, removal and restoration of outbuildings, fences and other structures, and the removal of mature trees, hedges and decorative gardens. For the property owners involved this phase represents the final and most intrusive aspect of the program. As such, the remedial designs must be sensitive to the needs of the community and individual property owners taking into consideration factors such as the need to minimize the disturbance to the neighborhood; maintaining geotechnical and structural stability of homes during excavations; removal and restoration of outbuildings affected by LLRW; removal and replacement of landscaping features (decks, fences, pools etc) and mature trees; radiation protection during earthworks; control of dust and noise; and maintaining safe access by residents. As Community satisfaction is a key metric for the success of the project, constant and effective communication at all stages of the project is necessary to ensure the residents understand the nature and extent of work to be undertaken; any and all inconveniences they can expect during the work; contingencies to deal with those inconveniences (e.g. parking, garbage collection etc); measures to protect their health and safety; scheduling; and what their property will look like at the completion of works. This paper provides an overview of the residential remediation program in Port Hope and describes the consultation efforts with property owners that are integral to the development of final designs. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2021

Evaluating the effects of a low-carbon energy transition on existing U.S. fossil energy communities

On-going efforts and the growing movement to transition from our current energy systems towards low-carbon and renewable sources have uncovered a range of challenges and concerns communities may face under this transition. An understanding of the current relationships and dynamics within communities can offer critical insights that stakeholders, as well as decision and policy makers can use to better support and affect the outcome of these transitions. To support this need, the National Energy Technology Laboratory has been developing a data-driven framework to aid in the characterization of fossil energy communities across the U.S. and offer insights to comprehensively address energy transaction concerns by different stakeholder groups and various stages associated with a low-carbon energy system. This presentation will offer details on our current work to integrate multiple environmental, social, and economic data variables, as well as key trends and insights that are being used to characterize these communities at a local and regional scale. These insights will be used to evaluate with alternative opportunities, including, but not limited to, hydrogen, rare earth elements and critical minerals, and energy storage, that could be aid in the transition for these communities from conventional energy resources.

Bauer, Jennifer↗

DOE OSTI2025

Response of Subsurface Nitrogen-Cycling Microbial Communities to Environmental Fluctuations (Final Technical Report)

Riparian floodplains are dynamic ecosystems linking terrestrial and riverine systems. These floodplains experience hydrological shifts such as changes in water table height, flooding, and drought and can be ‘hotspots’ of biogeochemical cycling due to shifting sediment moisture (and saturation) and subsurface exchanges of water, nutrients, and other compounds across different sediment layers. Subsurface microbial communities are the primary drivers of biogeochemical processes in floodplains, and thus their structure and function can directly influence both surface and groundwater quality. The microbial nitrogen (N) cycle is particularly important in floodplains as it affects nutrient availability and removal. Two functional guilds of chemoautotrophic (i.e. CO2-fixing) microorganisms are responsible for the first oxidative step of the N cycle, nitrification: ammonia-oxidizing archaea (AOA) and bacteria (AOB) catalyze the oxidation of ammonia to nitrite, while nitrite-oxidizing bacteria (NOB) oxidize nitrite to nitrate. Despite the critical role nitrification plays in N-cycling in both terrestrial and aquatic ecosystems, our understanding of the diversity, ecophysiology, and activity of nitrifying organisms in subsurface floodplain soils/sediments is extremely limited. To help address this critical knowledge gap, the overarching goal of this project was to determine how shifts in key environmental parameters and gradients impact microbial N-cycling communities/processes, with particular emphasis on nitrification, within hydrologically-variable floodplain sediments in the Wind River Basin near Riverton, Wyoming. The three specific objectives of this project were to: (1) to associate in situ environmental drivers of N cycling with distinct functional guilds; (2) determine the guild response to variation in key ecosystem drivers; and (3) develop a dynamic ecosystem model of the microbial N cycle with the Riverton subsurface using community genomic and biogeochemical data collected in the first two objectives. Over the course of this project, we employed both 16S rRNA gene amplicon sequencing and genome-resolved metagenomics to examine the phylogenetic diversity and metabolic potential of subsurface nitrifier communities within 68 samples collected across multiple sites, depths, and time points within the Riverton floodplain, allowing for both spatial and temporal investigations at different scales. This project benefitted tremendously from recent advances in high-throughput sequencing technologies coupled with dramatic improvements in the computational tools and algorithms available for analyzing such large, complex genomic datasets. By pairing these cutting-edge genomic approaches with depth-resolved sampling and detailed geochemical analyses of the Riverton floodplain, we have gained novel insights into the structure and function of subsurface nitrifier communities in relation to both hydrology and biogeochemistry. This project resulted in the most detailed and comprehensive characterization of N-cycling floodplain microbial communities to date and will hopefully inspire and pave the way for future studies using similar approaches in other floodplains. Indeed, such information is critical for understanding subsurface biogeochemical cycling and how elemental stores are altered from perturbations initiated by the water cycle within floodplains. Finally, because of the terrestrial-aquatic nature of the Riverton floodplain, results from this project are also of relevance to disciplines such as soil science, estuarine science, limnology & oceanography, biogeochemistry, geobiology, environmental engineering, as well as genomics and data science.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Community Dynamics Drive Calcium Carbonate Production in an Enriched Consortium of Soil Microbes

Recently, there has been a focus on using soil microbes as a means to store carbon in the soil in the form of calcium carbonate, outcomes of which include soil stabilization and biocementation. The molecular processes involved in microbially induced calcium carbonate formation are known, but there is still a significant knowledge gap regarding how community interactions, emergent processes that are distinct from the roles of individual members, may drive the formation of carbonate. To answer these questions, we describe the development and application of a consortium of soil microbes consisting of one species each of the Rhodococcus , Microbacterium , and Curtobacterium genera and two species from the Bacillus genus. We term these five species cultivated together carbon storing consortium A (CSC-A). Growth assays show that only a subset of CSC-A members produces CaCO 3 with Rhodococcus producing the most CaCO 3 but the complete CSC-A produces significantly higher amounts of CaCO 3 compared to the sum total carbonate produced by all member species. The development of CSC-A shows that CaCO 3 production may be as much a community process as it is the contribution of individual species, requiring us to move beyond single species analysis to fully understand carbonate formation by microbial communities in nature. CSC-A will allow the scientific community to ask and answer key questions about the molecular interactions surrounding inorganic carbon formation in soil, an important knowledge gap that must be filled if we wish to stabilize soils and harness microbial processes for materials production.

calcium carbonate↗

DOE OSTI2012

Zero Energy Communities with Central Solar Plants using Liquid Desiccants and Local Storage: Preprint

The zero energy community considered here consists of tens to tens-of-thousands of residences coupled to a central solar plant that produces all the community's electrical and thermal needs. A distribution network carries fluids to meet the heating and cooling loads. Large central solar systems can significantly reduce cost of energy vs. single family systems, and they enable economical seasonalheat storage. However, the thermal distribution system is costly. Conventional district heating/cooling systems use a water/glycol solution to deliver sensible energy. Piping is sized to meet the peak instantaneous load. A new district system introduced here differs in two key ways: i) it continuously distributes a hot liquid desiccant (LD) solution to LD-based heating and cooling equipment ineach home; and ii) it uses central and local storage of both LD and heat to reduce flow rates to meet average loads. Results for piping sizes in conventional and LD thermal communities show that the LD zero energy community reduces distribution piping diameters meeting heating loads by5X and meeting cooling loads by8X for cooling, depending on climate.

14 SOLAR ENERGY↗

DOE OSTI2023

The geographies, typologies, and trends of community-based organizations for solar energy in the United States

Community-based organizations (CBOs)1 play an important role in developing solar energy in low- and moderate-income (LMI) communities. This article shares the perspectives of CBO leaders in LMI communities, identifies and addresses solar information gaps, and provides recommendations State Energy Agencies and other government leaders can use to better involve CBOs in solar program initiatives. Using semi-structured interviews and focus groups with CBOs from across the United States (US) we develop typologies of CBO structure and function, and determine the primary motivations, challenges, opportunities, and communication barriers CBOs face. We explore the correlation between key typologies such as tenure, staff capacity, population served, organizational structure, and region with the organizational activities performed by solar-related CBOs. CBOs operate in disparate regional political and economic ecologies. Our findings suggest strategies for states to support their engagement in solar-related endeavors, particularly with respect to the dissemination of the Bipartisan Infrastructure Law, Inflation Reduction Act, and the EPA Greenhouse Gas Reduction Fund: Solar for All. Developing policies that encourage CBOs to enter the solar training and installation domains, alongside targeted grants and capacity-building initiatives can help maximize community benefits. Furthermore, states can additionally contribute to the positive trajectory and collaboration between state agencies and CBOs in advancing solar energy adoption by fostering a supportive environment.

14 SOLAR ENERGY↗

DOE OSTI2025

Synthetic communities as a model for determining interactions between a biofertilizer chassis organism and native microbial consortia

Biofertilizers are critical for sustainable agriculture because they can replace ecologically disruptive chemical fertilizers while improving the trajectory of soil and plant health. However, for improving deployment, the persistence of biofertilizers within native soil consortia must be elucidated and enhanced. In this study we characterized a high-throughput, modular, and automation-friendly in vitro approach to screen for biofertilizer persistence within soil-derived consortia after co-cultivation with stable synthetic soil microbial communities (SynComs) obtained through a top-down cultivation process. Here, we profiled ~1200 SynComs isolated from various soil sources and cultivated in divergent media types, and we detected significant phylogenetic diversity (e.g. Shannon index >4) and richness (observed richness >400) across these communities. We observed high reproducibility in SynCom community structure from common soil and media types, which provided a testbed for assessing biofertilizer persistence within representative native consortia. Furthermore, we demonstrated that the screening method described herein can be coupled with microbial engineering to efficiently identify soil-derived SynComs in which an engineered biofertilizer organism (i.e. Bacillus subtilis) persists. Accordingly, we discovered that B. subtilis persisted in ~10% of SynComs that generally followed the diversity–invasion principle. Additionally, our approach enabled analysis of the ecological impact of B. subtilis inoculation on SynCom structure and profile alterations in community diversity and richness associated with the presence of a genetically modified model bacterium. Ultimately, this work has established a modular pipeline that could be integrated into a variety of microbiology/microbiome-relevant workflows or related applications that would benefit from assessment of the persistence of a specific organism of interest and its interaction with native consortia.

biofertilizers↗

DOE OSTI2015

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2014

Energy Evaluation of a New Construction Pilot Community: Fresno, California

A new construction pilot community was constructed by builder-partner Wathen-Castanos Hybrid Homes based on a single occupied test house that was designed to achieve greater than 30% energy savings with respect to the Building America House Simulation Protocols developed by NREL. Builders face several key problems when implementing a whole-house systems integrated measures package from a single test house into multiple houses. This report addresses factors of implementation and scalability at the community scale and proposes methodologies by which community-scale energy evaluations can be performed based on results at the occupied test house level. Research focused on the builder and trade implementation of a measures package and the actual utility usage in the houses at the community scale of production. Five occupants participated in this research by providing utility bills and information on occupancy and miscellaneous gas and electric appliance use for their houses. IBACOS used these utility data and background information to analyze the actual energy performance of the houses. The actual utility bill readings were compared to projected energy consumption using BEopt with actual weather and thermostat set points for normalization.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2022

Status of State Community Solar Program Caps

As of May 2022, at least 18 states and Washington, D.C., included caps on their community solar programs. Most of these program caps are capacity-based, meaning that they limit the program size by capacity (i.e., the number of megawatts of energy produced by participating projects). In general, these programs are at the state level and are developed based on legislative mandates. Community solar deployment has been concentrated in a limited number of states. Of the top 10 states with community solar deployment, 5 have program caps and 5 are uncapped. In states with program caps, installed community solar capacity ranges from 7% to 40% of the program cap.

14 SOLAR ENERGY↗