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At least 757 records · Page 42

Vulcan-Forge: Architecture and Design of a Multi-Modal Forensic Analysis Plugin for CALDERA

Forge and VULCAN together describe an open-architecture cybersecurity analysis ecosystem that unifies forensic artifact processing, detection engineering, and vulnerability intelligence within integrated platforms. Forge operates as a plugin for MITRE CALDERA, ingesting diverse evidence formats—including EVTX, PCAP/PCAPNG, CSV, JSON, YAML, XML, binaries, and archives—to construct a unified artifact graph enriched with severity scoring, TLP classification, and audit trails. It provides subsystems for artifact parsing, streaming structured-data visualization, NetworkMiner-based packet inspection, PE/.NET binary analysis, and LLM-assisted triage and rule generation, with outputs validated against CCCS-YARA and pySigma schemas. VULCAN complements this by serving as a cybersecurity analyst platform that integrates a Neo4j knowledge graph, Qdrant vector retrieval, SSVC-based triage, and a local LLM to deliver CVE intelligence and forensic analysis through a multi-source ingest pipeline drawing from NVD, CISA KEV, EPSS, MITRE ATT&CK, and CAPEC. Together, they bridge structured threat intelligence with automated forensic analysis and detection workflows.

97 MATHEMATICS AND COMPUTING↗

Root identification in minirhizotron imagery with multiple instance learning

In this study, multiple instance learning (MIL) algorithms to automatically perform root detection and segmentation in minirhizotron imagery using only image-level labels are proposed. Root and soil characteristics vary from location to location, and thus, supervised machine learning approaches that are trained with local data provide the best ability to identify and segment roots in minirhizotron imagery. However, labeling roots for training data (or otherwise) is an extremely tedious and time-consuming task. This paper aims to address this problem by labeling data at the image level (rather than the individual root or root pixel level) and train algorithms to perform individual root pixel level segmentation using MIL strategies. Three MIL methods (multiple instance adaptive cosine coherence estimator, multiple instance support vector machine, multiple instance learning with randomized trees) were applied to root detection and compared to non-MIL approaches. The results show that MIL methods improve root segmentation in challenging minirhizotron imagery and reduce the labeling burden. In our results, multiple instance support vector machine outperformed other methods. The multiple instance adaptive cosine coherence estimator algorithm was a close second with an added advantage that it learned an interpretable root signature which identified the traits used to distinguish roots from soil and did not require parameter selection.

59 BASIC BIOLOGICAL SCIENCES↗

Generation and detection of 50 GHz surface acoustic waves by extreme ultraviolet pulses

In this work, we use femtosecond extreme ultraviolet pulses derived from a free electron laser to excite and probe surface acoustic waves (SAWs) on the (001) surface of single crystal SrTiO 3 . SAWs are generated by a pair of 39.9 nm pulses crossed at the sample with the crossing angle defining the SAW wavelength at 84 nm. Detection of SAWs is performed via diffraction of a time-delayed 13.3 nm probe pulse by SAW-induced surface ripples. Despite the low reflectivity of the sample in the extreme ultraviolet range, the reflection mode detection is found to be efficient because of an increase in the diffraction efficiency for shorter wavelengths. We describe a methodology for extracting the SAW attenuation in the presence of a thermal grating, which is based on measuring the decay of oscillations at twice the SAW frequency. The proposed approach can be used to study ultrahigh frequency SAWs in a broad range of materials and will bridge the wave vector gap in surface phonon spectroscopy between Brillouin scattering and He atom scattering.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Lossy compression of statistical data using quantum annealer

Abstract We present a new lossy compression algorithm for statistical floating-point data through a representation learning with binary variables. The algorithm finds a set of basis vectors and their binary coefficients that precisely reconstruct the original data. The optimization for the basis vectors is performed classically, while binary coefficients are retrieved through both simulated and quantum annealing for comparison. A bias correction procedure is also presented to estimate and eliminate the error and bias introduced from the inexact reconstruction of the lossy compression for statistical data analyses. The compression algorithm is demonstrated on two different datasets of lattice quantum chromodynamics simulations. The results obtained using simulated annealing show 3–3.5 times better compression performance than the algorithm based on neural-network autoencoder. Calculations using quantum annealing also show promising results, but performance is limited by the integrated control error of the quantum processing unit, which yields large uncertainties in the biases and coupling parameters. Hardware comparison is further studied between the previous generation D-Wave 2000Q and the current D-Wave Advantage system. Our study shows that the Advantage system is more likely to obtain low-energy solutions for the problems than the 2000Q.

97 MATHEMATICS AND COMPUTING↗

Learning an Eddy Viscosity Model Using Shrinkage and Bayesian Calibration: A Jet-in-Crossflow Case Study

In this paper, we demonstrate a statistical procedure for learning a high-order eddy viscosity model (EVM) from experimental data and using it to improve the predictive skill of a Reynolds-averaged Navier–Stokes (RANS) simulator. The method is tested in a three-dimensional (3D), transonic jet-in-crossflow (JIC) configuration. The process starts with a cubic eddy viscosity model (CEVM) developed for incompressible flows. It is fitted to limited experimental JIC data using shrinkage regression. The shrinkage process removes all the terms from the model, except an intercept, a linear term, and a quadratic one involving the square of the vorticity. The shrunk eddy viscosity model is implemented in an RANS simulator and calibrated, using vorticity measurements, to infer three parameters. The calibration is Bayesian and is solved using a Markov chain Monte Carlo (MCMC) method. A 3D probability density distribution for the inferred parameters is constructed, thus quantifying the uncertainty in the estimate. The phenomenal cost of using a 3D flow simulator inside an MCMC loop is mitigated by using surrogate models (“curve-fits”). A support vector machine classifier (SVMC) is used to impose our prior belief regarding parameter values, specifically to exclude nonphysical parameter combinations. The calibrated model is compared, in terms of its predictive skill, to simulations using uncalibrated linear and CEVMs. Finally, we find that the calibrated model, with one quadratic term, is more accurate than the uncalibrated simulator. The model is also checked at a flow condition at which the model was not calibrated.

42 ENGINEERING↗

Pseudogap and Fermi arc induced by Fermi surface nesting in a centrosymmetric skyrmion magnet

Skyrmions in noncentrosymmetric materials are believed to occur due to the Dzyaloshinskii-Moriya interaction. By contrast, the skyrmion formation mechanism in centrosymmetric materials remains elusive. Here, in this work, we reveal the intrinsic electronic structure of the centrosymmetric GdRu 2 Si 2 by selectively measuring magnetic domains using angle-resolved photoemission spectroscopy (ARPES). We found robust Fermi surface (FS) nesting, consistent with the magnetic modulation q -vector detected by the previous resonant x-ray scattering measurements. The pseudogap opens at the nested FS portions, which vary for different magnetic domains. The anomalous pseudogap disconnects the FS to generate Fermi arcs with twofold symmetry. These results indicate that the Ruderman-Kittel-Kasuya-Yosida (RKKY) interaction plays a decisive role in generating the screw spin modulation responsible for the skyrmion formation in GdRu 2 Si 2 . Furthermore, we demonstrate the flexible nature of magnetism in GdRu 2 Si 2 by manipulating magnetic domains with magnetic field and temperature cyclings, providing potential future applications for data storage and processing devices.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Bare mass effects on the reheating process after inflation

We consider the effects of a bare mass term for the inflaton, when the inflationary potential takes the form V(Φ)=λΦ k about its minimum with k ≥ 4. We concentrate on k =4, but discuss general cases as well. Further, we assume $λΦ$$^{2}_{end}$ >> $m$$^{2}_{Φ}$, where Φ end is the inflaton field value when the inflationary expansion ends. We show that the presence of a mass term (which may be present due to radiative corrections or supersymmetry breaking) can significantly alter the reheating process, as the equation of state of the inflaton condensate changes from w Φ = $\frac{1}{3}$ to w Φ = 0 when λ⁢Φ 2 drops below $m$$^{2}_{Φ}$. We show that, for a mass mΦ ≳ 3⁢λ $\frac{1}{4}$ T RH , the mass term will dominate at reheating. The value of λ is relatively model independent as it is normalized by the cosmic microwave background perturbation spectrum. For T models of inflation, this leads to m Φ ≳ T RH /250. We compute the effects on the reheating temperature for cases where reheating is due to inflaton decay (to fermions, scalars, or vectors) or to inflaton scattering (to scalars or vectors). For scattering to scalars and in the absence of a decay, there is always a residual inflaton background that acts as cold dark matter. In this case, we derive a strong upper limit to the inflaton bare mass which for T models is m Φ < 350 MeV⁢(T RH /10 10 GeV) 3/5 . We also consider the effect of the bare mass term on the fragmentation of the inflaton condensate.

79 ASTRONOMY AND ASTROPHYSICS↗

ASGarD: Adaptive Sparse Grid Discretization

Many areas of science exhibit physical processes that are described by high dimensional partial differential equations (PDEs), e.g., the 4D, 5D and 6D models describing magnetized fusion plasmas, models describing quantum chemistry, or derivatives pricing. Such problems are affected by the so-called “curse of dimensionality” where the number of degrees of freedom (or unknowns) required to be solved for scales as N D where N is the number of grid points in any given dimension D. A simple, albeit naive, 6D example is demonstrated in the left panel of Figure 1. With N = 1000 grid points in each dimension, the memory required just to store the solution vector, not to mention forming the matrix required to advance such a system in time, would exceed an exabyte - and also the available memory on the largest of supercomputers available today. The right panel of Figure 1 demonstrates potential savings for a range of problem dimensionalities and grid resolution. While there are methods to simulate such high-dimensional systems, they are mostly based on Monte-Carlo methods, which rely on a statistical sampling such that the resulting solutions include noise. Since the noise in such methods can only be reduced at a rate proportional to $\sqrt{N_p}$ where N p is the number of Monte-Carlo samples, there is a need for continuum, or grid/mesh-based methods for high-dimensional problems, which both do not suffer from noise and bypass the curse of dimensionality. We present a simulation framework that provides such a method using adaptive sparse grids.

97 MATHEMATICS AND COMPUTING↗

Application of the inverse fast multipole method as a preconditioner in a 3D Helmholtz boundary element method

Here we investigate an efficient preconditioning of iterative methods (such as GMRES) for solving dense linear systems Ax = b that follow from a boundary element method (BEM) for the 3D Helmholtz equation, focusing on the low-frequency regime. While matrix–vector products in GMRES can be accelerated through the low-frequency fast multipole method (LFFMM), the BEM often remains computationally expensive due to the large number of GMRES iterations. We propose the application of the inverse fast multipole method (IFMM) as a preconditioner to accelerate the convergence of GMRES. The IFMM is in essence an approximate direct solver that uses a multilevel hierarchical decomposition and low-rank approximations. The proposed IFMM-based preconditioning has a tunable parameter ε that balances the cost to construct a preconditioner M, which is an approximation of A -1 , and the cost to perform the iterative process by means of M. Namely, using a small (respectively, large) value of ε takes a long (respectively, short) time to construct M, while the number of iterations can be small (respectively, large). A comprehensive set of numerical examples involving various boundary value problems with complicated geometries and mixed boundary conditions is presented to validate the efficiency of the proposed method. We show that the IFMM preconditioner (with a nearly optimal ε of 10 -2 ) clearly outperforms some common preconditioners for the BEM, achieving 1.2–10.8 times speed-up of the computations, in particular when the scale of the underlying scatterer is about five wavelengths or more. In addition, the IFMM preconditioner is capable of solving complicated problems (in a reasonable amount of time) that BD preconditioner can not.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A Remote Sensing Technique to Upscale Methane Emission Flux in a Subtropical Peatland

Abstract Quantification of methane (CH 4 ) gas emission from peat is critical to understand CH 4 budget from natural wetlands under a climate warming scenario. Previous studies have focused on prediction and mapping of CH 4 emission flux using process‐based models, while application of statistical‐empirical models for upscaling spatially sparse in situ measurements is scarce. In this study, we developed an empirical remote sensing upscaling approach to estimate CH 4 emission flux in the Everglades using limited in situ point‐based CH 4 emission flux measurements and Landsat data during 2013–2018. We spatially and temporally linked in situ data with Landsat surface reflectance based on temporally composite data sets and developed an object‐based machine learning framework to model and map CH 4 emission flux. An ensemble analysis of two machine learning models, k ‐Nearest Neighbor ( k ‐NN) and Support Vector Machine (SVM), shows that the upscaling approach is promising for predicting CH 4 emission flux with a R 2 of 0.65 and 0.87 based on a fivefold cross‐validation for a dry season and wet season estimation, respectively. We generated emission flux map products that successfully revealed the spatial and temporal heterogeneity of CH 4 emission within the dominant freshwater marsh ecosystem in the Everglades. We conclude that Landsat is promising for upscaling and monitoring CH 4 emission flux and reducing the uncertainty in emission estimates from wetlands.

Zhang, Caiyun↗

Datum: A Scientific Metadata Catalog

The data catalog market is currently flooded with a myriad of different products, but none serve the scientific community well. There are cloud-native tools like Databricks, Snowflake,to on-premise solutions like Collibra and Datahub. The common failing of all these tools however, is their inability to serve the scientific data community directly. Most catalogs are targeted towards financial, health, or user data - not sensor or scientific domain data. They also prioritize integrations that often don’t exist or are just starting to be used in the scientific realm - all while ignoring common scientific tools and file types. Datum is a catalog which targets the scientific data directly, including the tools and networks in which those tools are used. We work with the producers and consumers of the data where they are, targeting cloud and on-premise with a focus on classified networks. Datum is an Erlang/Elixir application. Technical Features Note: The features listed below are still under development and may change, slightly, upon final delivery of the product. File Formats - Datum has the ability to read additional metadata and provides processing pipelines for the following file formats: Plain Text, PDF, LaTeX, HTML, Open Document Format (.odt), XML, CSV/TSV (and other standard delimiters), OpenDocument Database and Spreadsheets, Geo-Referenced TIFF, Common Data Format, HDF/HDF5, LabView TDMS, Excel, DeltaTables, Parquet, Apache Iceberg, Apache Hudi and many others. Metadata Collection - Scanners for the local and networked file systems and cloud storage providers. Network integration with common databases such as MSSQL and MySQL. User Plugin System - Users are able to provide either file processing, metadata extraction, or sampling plugins in the programming language of their choice. Authentication/Authorization -: OIDC integration, SCIM provisioning and EntraID integration out of the box. Full user and group management system with a “least privilege” operating mode. Governance - Customizable data governance platform; dictate and enforce required metadata, enforce data embargos, and enforce user agreements and NDAs before data access. Ability to create health checks on data, rejecting abandoned or poorly curated data and automatically removing it from the search index. Ability for users to submit corrections. Search - Semantic search is a first class citizen. No licenses to expensive, external software required. Integrated use of vectors and vector-based search allows for AI agent integration at all levels of operation. Metadata Model - Display and control data’s lineage and connections to other data and data directories. Data is modeled after a filesystem - an organization instantly recognizable and navigable by most any user. CLI and SDK - Ships with a Command Line Interface (CLI) tool and with a fully-featured Python SDK. This allows for rapid and programmatic use of Datum by every level of user. Minimal Infrastructure - Datum ships as a single executable file and can be run on any operating system and most CPU architectures. Datum has no reliance on external databases, search indexing tools, or other outside services - and it runs equally well on edge computing devices, cloud services, or in a clustered HPC environment.

darrington, john↗

Chemical Recommender System: Replacement Suggestions for Small Molecules

The Chemical Recommender System (CRS) is an open-source, high-performance toolkit that enables real-time similarity searches across the complete PubChem database (over 50 million molecules) using commodity hardware. The CRS addresses critical limitations in existing chemical informatics platforms through a novel vector database infrastructure, extensible model integration capabilities, and complete algorithmic transparency. The system implements a vector database deployment with partitioned indexing that achieves a ~60x speedup over traditional approaches. A containerized model integration framework allows researchers to seamlessly incorporate custom predictive models into the full-scale search and scoring pipeline, while complete configurability of search parameters, filtering logic, and scoring functions provides capabilities not available in existing black-box solutions. Beyond structural similarity, the CRS integrates OPERA QSAR models for thermophysical and toxicity predictions, RDKit synthetic accessibility scoring, and user-defined models to compute weighted final replacement scores. The complete system is accessible through an interactive web application supporting real-time progress monitoring, post-processing score re-weighting, automated PDF reporting, and batch processing capabilities.

Nair, Parthiv Anand [Sandia National Laboratories ↗

Reconstruction for Liquid Argon TPC Neutrino Detectors Using Parallel Architectures.

Neutrinos are particles that interact rarely, so identifying them re-quires large detectors which produce lots of data. Processing this data with thecomputing power available is becoming more dicult as the detectors increasein size to reach their physics goals. In liquid argon time projection chambers(TPCs) the charged particles from neutrino interactions produce ionization elec-trons which drift in an electric field towards a series of collection wires, and thesignal on the wires is used to reconstruct the interaction. The MicroBooNEdetector currently collecting data at Fermilab has 8000 wires, and planned fu-ture experiments like DUNE will have 100 times more, which means that thetime required to reconstruct an event will scale accordingly. Modernization ofliquid argon TPC reconstruction code, including vectorization, parallelizationand code portability to GPUs, will help to mitigate these challenges. The liquidargon TPC hit finding algorithm within theLArSoftframework used acrossmultiple experiments has been vectorized and parallelized. This increases thespeed of the algorithm on the order of ten times within a standalone version onIntel architectures. This new version has been incorporated back intoLArSoftso that it can be generally used. These methods will also be applied to otherlow-level reconstruction algorithms of the wire signals such as the deconvolu-tion. The applications and performance of this modernized liquid argon TPCwire reconstruction will be presented.

Berkman, Sophie↗

Monitoring covariance in multivariate time series: Comparing machine learning and statistical approaches

Abstract In complex systems with multiple variables monitored at high‐frequency, variables are not only temporally autocorrelated, but they may also be nonlinearly related or exhibit nonstationarity as the inputs or operation changes. One approach to handling such variables is to detrend them prior to monitoring and then apply control charts that assume independence and stationarity to the residuals. Monitoring controlled systems is even more challenging because the control strategy seeks to maintain variables at prespecified mean levels, and to compensate, correlations among variables may change, making monitoring the covariance essential. In this paper, a vector autoregressive model (VAR) is compared with a multivariate random forest (MRF) and a neural network (NN) for detrending multivariate time series prior to monitoring the covariance of the residuals using a multivariate exponentially weighted moving average (MEWMA) control chart. Machine learning models have an advantage when the data's structure is unknown or may change. We design a novel simulation study with nonlinear, nonstationary, and autocorrelated data to compare the different detrending models and subsequent covariance monitoring. The machine learning models have superior performance for nonlinear and strongly autocorrelated data and similar performance for linear data. An illustration with data from a reverse osmosis process is given.

Weix, Derek↗

Reconstruction for Liquid Argon TPC Neutrino Detectors Using Parallel Architectures [Slides]

Neutrinos are particles that interact rarely, so identifying them requires large detectors which produce lots of data. Processing this data with the computing power available is becoming more difficult as the detectors increase in size to reach their physics goals. In liquid argon time projection chambers (TPCs) the charged particles from neutrino interactions produce ionization electrons which drift in an electric field towards a series of collection wires, and the signal on the wires is used to reconstruct the interaction. The MicroBooNE detector currently collecting data at Fermilab has 8000 wires, and planned future experiments like DUNE will have 100 times more, which means that the time required to reconstruct an event will scale accordingly. Modernization of liquid argon TPC reconstruction code, including vectorization, parallelization and code portability to GPUs, will help to mitigate these challenges. The liquid argon TPC hit finding algorithm within the L arSoft framework used across multiple experiments has been vectorized and parallelized. This increases the speed of the algorithm on the order of ten times within a stand alone version on Intel architectures. This new version has been incorporated back into LarSoft so that it can be generally used. These methods will also be applied to other low level reconstruction of the wire signals such as the deconvolution. The applications and performance of this modernized liquid argon TPC wire reconstruction will be presented.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Los Alamos National Laboratory LiDAR Processing and Hydro-Enforcement Report

This report describes a project conducted by Los Alamos National Laboratory (LANL) and 3AE Green to process and hydro-enforce LiDAR data over approximately 170 square miles. A variety of Government Furnished Information (GFI) including LiDAR (2021), 3-inch pixel resolution natural-color imagery (2018), stormwater infrastructure, culvert, bridge, and building features were analyzed to develop a hydro-enforced digital elevation model (DEM). Where overland flow was obstructed by elevation surface feature, representational cutline features were placed and integrated into the LiDAR-based elevation surface to allow for more appropriate flow across roadbeds and other impediments to natural flow. This hydro-enforced DEM was utilized to model and develop more than 6.5 million three-dimensional (3D) vector flow line features (prior to line joining / merging) representing the derived digital drainage network deliverable.

42 ENGINEERING↗

Morphogenic Regulator-Mediated Transformation of Maize Inbred B73

Maize B73 is a reference genome and has long been a major resource for genetics and molecular biology research. We have developed an efficient B73 transformation protocol by enabling somatic embryogenesis through differential co-expression of maize morphogenic regulators BBM and WUS2. We describe a successful protocol that utilizes Agrobacterium tumefaciens strain AGL1 harboring binary vector PHP78891 that comprises a BBM and WUS2 expression cassette as well as a green fluorescent protein (GFP) reporter cassette. The PHP78891 vector also contains, within the T-DNA region, a CRE/lox recombination system flanking the CRE/BBM/WUS2 co-expression cassette driven by the desiccation inducible RAB17 promoter that allows removal of the BBM/WUS2 cassette. Introduction and co-expression of BBM and WUS2 induced direct somatic embryogenesis (SE) in non-regenerable maize B73 from immature embryo explants. Removal of the CRE/BBM/WUS2 cassette is essential to allow regeneration to fertile plants. The GFP expression cassette outside the lox excision sites is retained in the transgenic plant genome, allowing subsequent phenotypic analysis of calli and regenerated transgenic events. This transformation system enables a selectable marker-free transformation process by taking advantage of BBM/WUS2-induced SE as a developmental selection system.

59 BASIC BIOLOGICAL SCIENCES↗