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At least 757 records · Page 42
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils

The advance of high-throughput molecular biology tools allows in-depth profiling of microbial communities in soils, which possess a high diversity of prokaryotic microorganisms. Amplicon-based sequencing of 16S rRNA genes is the most common approach to studying the richness and composition of soil prokaryotes. To reliably detect different taxonomic lineages of microorganisms in a single soil sample, an adequate pipeline including DNA isolation, primer selection, PCR amplification, library preparation, DNA sequencing, and bioinformatic post-processing is required. Besides DNA sequencing quality and depth, the selection of PCR primers and PCR amplification reactions arguably have the largest influence on the results. This study tested the performance and potential bias of two primer pairs, i.e., 515F (Parada)-806R (Apprill) and 515F (Parada)-926R (Quince) in the standard pipelines of 16S rRNA gene Illumina amplicon sequencing protocol developed by the Earth Microbiome Project (EMP), against shotgun metagenome-based 16S rRNA gene reads. The evaluation was conducted using five differently managed soils. We observed a higher richness of soil total prokaryotes by using reverse primer 806R compared to 926R, contradicting to in silico evaluation results. Both primer pairs revealed various degrees of taxon-specific bias compared to metagenome-derived 16S rRNA gene reads. Nonetheless, we found consistent patterns of microbial community variation associated with different land uses, irrespective of primers used. Total microbial communities, as well as ammonia oxidizing archaea (AOA), the predominant ammonia oxidizers in these soils, shifted along with increased soil pH due to agricultural management. In the unmanaged low pH plot abundance of AOA was dominated by the acid-tolerant NS-Gamma clade, whereas limed agricultural plots were dominated by neutral-alkaliphilic NS-Delta/NS-Alpha clades. This study stresses how primer selection influences community composition and highlights the importance of primer selection for comparative and integrative studies, and that conclusions must be drawn with caution if data from different sequencing pipelines are to be compared.

16S rRNA gene amplicon Illumina sequencing↗
DOE OSTI2024

Diabetes-specific formula with standard of care improves glycemic control, body composition, and cardiometabolic risk factors in overweight and obese adults with type 2 diabetes: results from a randomized controlled trial

Background and aims Medical nutrition therapy is important for diabetes management. This randomized controlled trial investigated the effects of a diabetes-specific formula (DSF) on glycemic control and cardiometabolic risk factors in adults with type 2 diabetes (T2D). Methods Participants ( n = 235) were randomized to either DSF with standard of care (SOC) (DSF group; n = 117) or SOC only (control group; n = 118). The DSF group consumed one or two DSF servings daily as meal replacement or partial meal replacement. The assessments were done at baseline, on day 45, and on day 90. Results There were significant reductions in glycated hemoglobin (−0.44% vs. –0.26%, p = 0.015, at day 45; −0.50% vs. −0.21%, p = 0.002, at day 90) and fasting blood glucose (−0.14 mmol/L vs. +0.32 mmol/L, p = 0.036, at day 90), as well as twofold greater weight loss (−1.30 kg vs. –0.61 kg, p < 0.001, at day 45; −1.74 kg vs. –0.76 kg, p < 0.001, at day 90) in the DSF group compared with the control group. The decrease in percent body fat and increase in percent fat-free mass at day 90 in the DSF group were almost twice that of the control group (1.44% vs. 0.79%, p = 0.047). In addition, the percent change in visceral adipose tissue at day 90 in the DSF group was several-fold lower than in the control group (−6.52% vs. –0.95%, p < 0.001). The DSF group also showed smaller waist and hip circumferences, and lower diastolic blood pressure than the control group (all overall p ≤ 0.045). Conclusion DSF with SOC yielded significantly greater improvements than only SOC in glycemic control, body composition, and cardiometabolic risk factors in adults with T2D.

Tey, Siew Ling↗
DOE OSTI2023

Beyond the Standard Model New Physics Searches with SBND

SBND (Short-Baseline Near Detector) is a 112-ton liquid argon time projection chamber located on the Booster Neutrino Beam at Fermi National Accelerator Laboratory, and is the near detector of the Short-Baseline Neutrino program. The primary goals of SBND are to provide flux constraints for sterile neutrino searches, conduct world-leading neutrino cross-section measurements on argon, and perform Beyond the Standard Model (BSM) new physics searches with its high-precision particle identification capabilities. SBND’s prospects and tools for detecting a variety of BSM phenomena produced in a neutrino beam, such as sub-GeV dark matter, dark neutrinos, heavy neutral leptons and millicharged particles, are discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

The Standard Model Theory of Neutron Beta Decay

We review the status of the Standard Model theory of neutron beta decay. Particular emphasis is put on the recent developments in the electroweak radiative corrections. Given that some existing approaches give slightly different results, we thoroughly review the origin of discrepancies, and provide our recommended value for the radiative correction to the neutron and nuclear decay rates. The use of dispersion relation, lattice Quantum Chromodynamics, and an effective field theory framework allows for high-precision theory calculations at the level of 10 –4 , turning neutron beta decay into a powerful tool to search for new physics, complementary to high-energy collider experiments. We offer an outlook to the future improvements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Detecting Long-period Variability in the SDSS Stripe 82 Standards Catalog

We report the results of a search for long-period (100 < P < 600 days) periodic variability in the SDSS Stripe 82 standards catalog. The SDSS coverage of Stripe 82 enables such a search because there are on average 20 observations per band in ugriz bands for about one million sources, collected over about 6 yr, with a faint limit of r ~ 22 mag and precisely calibrated 1%–2% photometry. We calculated the periods of variable source candidates in this sample using the Lomb–Scargle periodogram and considered the three highest periodogram peaks in each of the gri filters as relevant. Only those sources with gri periods consistent within 0.1% were later studied. We use the Kuiper statistic to ensure uniform distribution of data points in phased light curves. We present five sources with the spectra consistent with quasar spectra and plausible periodic variability. This SDSS-based search bodes well for future sensitive large-area surveys, such as the Rubin Observatory Legacy Survey of Space and Time, which, due to its larger sky coverage (about a factor of 60) and improved sensitivity (~2 mag), will be more powerful for finding such sources.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

It’s Dust: Solving the Mysteries of the Intrinsic Scatter and Host-galaxy Dependence of Standardized Type Ia Supernova Brightnesses

The use of Type Ia supernovae (SNe Ia) as cosmological tools has motivated significant effort to understand what drives the intrinsic scatter of SN Ia distance modulus residuals after standardization, characterize the distribution of SN Ia colors, and explain why properties of the host galaxies of the SNe correlate with SN Ia distance modulus residuals. We use a compiled sample of ~1450 spectroscopically confirmed photometric light curves of SNe Ia and propose a solution to these three problems simultaneously that also explains an empirical 11 σ detection of the dependence of Hubble residual scatter on SN Ia color. We introduce a physical model of color where intrinsic SN Ia colors with a relatively weak correlation with luminosity are combined with extrinsic dust-like colors ( E ( B - V )) with a wide range of extinction parameter values ( R V ). This model captures the observed trends of Hubble residual scatter and indicates that the dominant component of SN Ia intrinsic scatter is variation in R V . We also find that the recovered E ( B - V ) and R V distributions differ based on global host-galaxy stellar mass, and this explains the observed correlation ( γ ) between mass and Hubble residuals seen in past analyses, as well as an observed 4.5 σ dependence of γ on SN Ia color. This finding removes any need to ascribe different intrinsic luminosities to different progenitor systems. Finally, we measure biases in the equation of state of dark energy ( w ) up to |Δ w | = 0.04 by replacing previous models of SN color with our dust-based model; this bias is larger than any systematic uncertainty in previous SN Ia cosmological analyses.

Astronomy & Astrophysics↗
DOE OSTI2026

Probing Physics beyond the Standard Model through Combined Analyses of Next-generation Type Ia Supernova, Cosmic Microwave Background, and Baryon Acoustic Oscillation Surveys

Observations of Type Ia supernovae (SNe Ia), which probe the late Universe, together with baryon acoustic oscillations (BAO) and the cosmic microwave background (CMB), which probe the intermediate and early epochs, provide complementary constraints on the expansion history of the Universe. In this work, we forecast constraints on dark energy and other extensions to the standard cosmological model by combining the SN Ia sample expected from the Vera C. Rubin Observatory’s Legacy Survey of Space and Time (LSST), data from current and forthcoming CMB surveys, and BAO measurements from the Dark Energy Spectroscopic Instrument (DESI). For the CMB, we use temperature, polarization, and lensing power spectra (TT/EE/TE/ϕϕ) from the South Pole Telescope, the planned Advanced Simons Observatory, and a CMB-S4–like experiment. We derive constraints on ΛCDM and its extensions involving the dark energy equation-of-state parameters (w 0 , w a ) and the sum of neutrino masses ∑m ν using a Markov Chain Monte Carlo (MCMC) sampling framework. We find that the LSST Year 3 SN Ia sample can improve upon the DES Year 5 dark energy constraints by a factor of 2−2.5×, with the gains driven primarily by the significantly higher SN Ia density in the LSST sample. Similarly, DESI-DR3 shows up to a 1.8× improvement on dark energy parameters over DR2, driven largely by the substantial increase in the low-redshift sample. Combining CMB with LSST-Y3-SN Ia and DESI-DR3-BAO yields σ(w 0 ) = 0.028 and σ(w a ) = 0.11 for w 0 w a CDM cosmology with the results being largely independent of the CMB dataset. The constraints weaken by 10%–30% when freeing ∑m ν and spatial curvature. Moreover, the joint analysis of the three datasets can enable a 2σ–3σ detection of ∑m ν .

Raghunathan, Srinivasan [University of California;↗
DOE OSTI2026

V2XConnect: Harmonizing the Landscape of Bidirectional Charging Codes, Standards, and Communication Protocols

The utility grid is constantly evolving with new generation sources and diverse loads from backup generators, backup batteries, rooftop photovoltaics (PV), and flexible charging loads. Each of these technologies presents consumers with an opportunity to work with their local utility to promote grid stability, reliability, and affordability. Through a wide range of programs, utilities are incentivizing the use of these resources to benefit the grid. However, especially for devices with inverters that supply power back to the grid, it is important that these assets comply with local grid codes to ensure human safety, power quality, and grid reliability. One of the most promising of these new technologies is the bidirectional electric vehicle (EV) coupled with bidirectional electric vehicle supply equipment (EVSE). This report introduces the technologies that enable bidirectional charging and how these systems operate. It then outlines the necessary interconnection codes and industry standards that govern the operations of grid-tied inverters, including those in bidirectional charging. A key challenge is then outlined from the complex landscape of communication protocols and proprietary systems designed to coordinate these grid assets. Finally, a single gateway solution is proposed to harmonize communications between all assets across an entire site for a cohesive response to grid codes and utility programs that is flexible enough to support a range of market options.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2025

Legacy Survey of Space and Time Data Preview 1: standard_bandpass dataset type

The Legacy Survey of Space and Time Data Preview 1 (DP1) is the first release of data from the NSF-DOE Vera C. Rubin Observatory. It consists of raw and calibrated single-epoch images, co-adds, difference images, detection catalogs, and other derived data products. DP1 is based on 1792 science-grade optical/near-infrared exposures acquired over 48 distinct nights by the Rubin Commissioning Camera, LSSTComCam, on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile during the first on-sky commissioning campaign in late 2024. DP1 covers a total of approximately 15 sq. deg. over seven roughly equally-sized non-contiguous fields, each independently observed in six broad photometric bands, ugrizy, spanning a range of stellar densities and latitudes and overlapping with external reference datasets. This dataset is a subset of the full data release consisting of the standard_bandpass dataset type. These are the LSSTComCam filter bandpasses. This release contains 6 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Legacy Survey of Space and Time Data Preview 2: standard_passband dataset type

We present Rubin Data Preview 2 (DP2), the second data preview from the NDF-DOE Vera C. Rubin Observatory. Data Preview 2 (DP2) comprises coadds, detection catalogs, and ancillary data products; and when fully released will also include single-epoch images and difference images. DP2 is derived from observations acquired by the LSST Science Camera (LSSTCam) on the Simonyi Survey Telescope at the Summit Facility on Cerro Pachón, Chile, primarily during the on-sky commissioning campaign between 2025-04-16 and 2025-09-21, supplemented by observations taken between 2025-10-25 and 2026-01-06 that overlap the commissioning footprint. The DP2 footprint comprises the Science Validation wide-area survey, five Deep Drilling Fields, and a number of targeted small-field regions, including Trifid and Lagoon, Prawn, M49, and New Horizons, all observed as part of the Rubin First Look campaign. Each field was imaged in up to six broad photometric bands, ugrizy, and coadded to produce deep imaging covering an estimated 3,000 deg2. The addition of single-visit-only areas expands the total DP2 footprint to an estimated 15,000 deg2, with coverage in at least one filter. The median per-visit PSF FWHM across the wide-area survey ranges from 1.17 arcsec in the z band to 1.26 arcsec in g and r bands. The deepest field, reaches estimated coadded 5σ depths of u=26 mag, g=26.8 mag, r=26.3 mag, i=26.1 mag, z=25.3 mag, y=23.9 mag. Based on a roughly five-month primary observing baseline and covering only part of the eventual LSST footprint, DP2's area, depth, and multiband coverage nonetheless support a broad range of early science investigations ahead of LSST Data Release This dataset is a subset of the full data release consisting of the standard_passband dataset type. These are the LSSTCam filter bandpasses. This release contains 6 datasets of this type.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Improved isotope-shift-based bounds on bosons beyond the Standard Model through measurements of the $^2$D$_{3/2} - ^2$D$_{5/2}$ interval in Ca$^+$

We perform high-resolution spectroscopy of the $3$d$~^2$D$_{3/2} - 3$d$~^2$D$_{5/2}$ interval in all stable even isotopes of $^A$Ca$^+$ (A = 40, 42, 44, 46 and 48) with an accuracy of $\sim$ 20 Hz using direct frequency-comb Raman spectroscopy. Combining these data with isotope shift measurements of the 4s$~^2$S$_{1/2} \leftrightarrow 3$d$~^2$D$_{5/2}$ transition, we carry out a King plot analysis with unprecedented sensitivity to coupling between electrons and neutrons by bosons beyond the Standard Model. Furthermore, we estimate the sensitivity to such bosons from equivalent spectroscopy in Ba$^+$ and Yb$^+$. Finally, the data yield isotope shifts of the 4s$~^2$S$_{1/2} \leftrightarrow 3$d$~^2$D$_{3/2}$ transition at 10 part-per-billion through combination with recent data of Knollmann et al (2019).

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Ultrasonic Testing (UT) Reference Standard for Additive Manufacturing Quality Control

Many additive manufacturing (AM) reference standards for build quality verification concentrate primarily on external features. In contrast, EPRI proposes a pair of AM reference blocks that feature only internal and embedded forms. This report presents, collates, and discusses quantitative nondestructive evaluation (NDE) results from various techniques, including visual testing (VT), radiographic testing (RT), conventional ultrasonic testing (UT), and full matrix capture/total focusing method (FMC/TFM) scanning. The blocks are intended, as part of a larger series of blocks, to evaluate build quality and the relative performance of different NDE techniques in detecting various features. The limits of detectability and the closeness of the as-built shape to the intended form for certain features are quantified, facilitating direct comparison. Upon analysis of the results of this testing, it was found that FMC/TFM was consistently superior in detection, followed by conventional UT, then VT, and lastly RT.

36 MATERIALS SCIENCE↗