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At least 757 records · Page 42

Gas-phase preparation of the dibenzo[ e,l ]pyrene (C 24 H 14 ) butterfly molecule via a phenyl radical-mediated ring annulation

A high temperature phenyl-mediated addition–cyclization–dehydrogenation mechanism to form peri-fused polycyclic aromatic hydrocarbon (PAH) derivatives—illustrated through the formation of dibenzo[e,l]pyrene (C 24 H 14 )—is explored through a gas-phase reaction of the phenyl radical (C 6 H 5 ˙) with triphenylene (C 18 H 12 ) utilizing photoelectron photoion coincidence spectroscopy (PEPICO) combined with electronic structure calculations. Low-lying vibrational modes of dibenzo[e,l]pyrene exhibit out-of-plane bending and are easily populated in high temperature environments such as combustion flames and circumstellar envelopes of carbon stars, thus stressing dibenzo[e,l]pyrene as a strong target for far-IR astronomical surveys.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

High-Level Synthesis of Irregular Applications: A Case Study on Influence Maximization

The Influence Maximization problem is the problem of identifying a small cohort of actors from a broader population that, when initially activated in a diffusion process, are expected to result in a large number of activations in the population. While the problem is known to be NP-hard, several approximation algorithms have been devised by leveraging its submodular structure. While these algorithms are theoretically efficient, they are computationally very expensive in practice. This work advances the current state-of-the-art parallelization scheme for the IMM algorithm by devising the adoption of custom hardware accelerators implemented on FPGAs by leveraging High Level Synthesis from OpenCL. We study the performance of our proposed approach by exploring optimizations tailored at improving the parallel efficiency of the accelerators and highlight their effects and limitations in accelerating complex graph analytic applications. Our experimental evaluation shows that FPGA acceleration can improve the performance of the LT diffusion model up to 1.72x for the entire application and up to 2.90x for its most important kernel with respect to a CPU only parallel execution. The FPGA acceleration of the LT model shows also a 1.54x reduction in energy consumption when compared to a parallel CPU only run.

Neff, Reece W.↗

Orbital Evolution of Binary Black Holes in Active Galactic Nucleus Disks: A Disk Channel for Binary Black Hole Mergers?

We perform a series of high-resolution 2D hydrodynamical simulations of equal-mass binary black holes (BBHs) embedded in active galactic nucleus (AGN) accretion disks to study whether these binaries can be driven to merger by the surrounding gas. We find that the gravitational softening adopted for the BBH has a profound impact on this result. When the softening is less than 10% of the binary separation, we show that, in agreement with recent simulations of isolated equal-mass binaries, prograde BBHs expand in time rather than contract. Eventually, however, the binary separation becomes large enough that the tidal force of the central AGN disrupts them. Only when the softening is relatively large do we find that prograde BBHs harden. We determine through detailed analysis of the binary torque, that this dichotomy is due to a loss of spiral structure in the circum-single disks orbiting each black hole when the softening is a significant fraction of the binary separation. Properly resolving these spirals—both with high resolution and small softening—results in a significant source of binary angular momentum. Only for retrograde BBHs do we find consistent hardening, regardless of softening, as these BBHs lack the important spiral structure in their circum-single disks. This suggests that the gas-driven inspiral of retrograde binaries can produce a population of compact BBHs in the gravitational-wave-emitting regime in AGN disks, which may contribute a large fraction to the observed BBH mergers.

79 ASTRONOMY AND ASTROPHYSICS↗

Dynamics of plankton populations in upwelling areas

There are no author-identified significant results in this report. Repeated coverage over the test site along the northwest coast of Africa showed that the structure of chlorophyll distribution is much more complicated than expected from continuous recordings. ERTS-1 data showed a very fast change in the chlorophyll distribution and it seems that also the concentration changes quickly. ERTS-1 showed on some frames offshore transportation of dust from the Sahara. All frames from Channel 7 will be arranged as a montage to derive the transportation pattern of dust. This step is important in biological aspects of interpreting ERTS-1 data, because the dissolution kinetics of eolian dust particles may influence significantly the chemistry of the surface water. Since visibility and the biochemistry of the test site off Africa are influenced by the dust transport, dust collection will be included in the ground truth program. Besides chlorophyll and other hydrographical parameters, the dust load in the test area will be measured. The collection plan is discussed along with a description of the high volume air sampler and the Anderson particle sizing head sampler to be used for the dust measurements.

Szekielda, K.↗

Subband Quantum Scattering Times for Algaas/GaAs Obtained Using Digital Filtering

In this study we investigate both the transport and quantum scattering times as a function of the carrier concentration for a modulation doped Al(0.3)Ga(0.7)As/GaAs structure. Carriers in the well are generated as a result of the persistent photoconductivity effect. When more than one subband becomes populated, digital filtering is used to separate the components for each of the excited subbands. We find that the quantum scattering time for the ground subband increases initially as the carrier concentration is increased. However, once the second subband becomes populated, the ground subband scattering time begins to decrease. The quantum scattering time for the excited subband is also observed to decrease as the concentration is increased. From the ratio of the transport and quantum scattering times, it is seen that the transport in the well becomes more isotropic also as the concentration is increased.

Mena, R. A.↗

Short period Miras and Galactic Structure

Red Giants on the Asymptotic Giant Branch typically are more luminous than M(sub K) = -7 mag. Therefore, a new Two Micron Sky Survey (2MASS) which will go as faint as m(sub K) = 10 mag will be able to observe most of these stars in the Milky Way. Such a complete census will enable us to develop a much better understanding of Galactic Structure. It will be important to separate the luminous red giants into their different subclasses because these subclasses trace different Galactic Populations. For example, Miras with periods less than 300 days can be used to study the 'thick disk', while Miras with periods greater than 300 days belong to the 'thin disk'.

Jura, M↗

Microbeam studies of the sensitivity of structures within living cells

Determining the biological effects of low doses of radiation with high linear energy transfer (LET) is complicated by the stochastic nature of charged-particle interactions. Populations of cells exposed to very low radiation doses contain a few cells which have been hit by a charged particle, while the majority of the cells receive no radiation damage. At somewhat higher doses, a few cells receive two or more events. Because the effects of damage produced by separate events can interact in the cell, we have had to make assumptions about the nature of these interactions in order to interpret the results of the experiments. Many of those assumptions can be tested if we can be sure of the number of charged-particle events which occur in individual cells, and correlate this number with the biological effect. We have developed a special irradiation facility at Pacific Northwest Laboratory (PNL) to control the actual number of charged particle tracks that pass through cell nuclei. The beam from a 2 MeV tandem accelerator is collimated to approximately 5 microns. Cells, grown in special dishes with 1.5 microns thick plastic bottoms, are positioned so that the desired portion of the cell aligns with the collimator. A shutter in the beam line is opened and closed after the desired number of particle tracks has been counted. This approach can be used to investigate the effects of the interaction between irradiated and unirradiated cells in an organized system, as well as to study the effects of spatial and temporal distribution of radiation damage within single cells.(ABSTRACT TRUNCATED AT 250 WORDS).

Non-NASA Center↗

Probabilistic Inference of Low-Surface-Brightness Galaxy Morphological Parameters Using Simulation-Based Inference

Low-surface-brightness galaxies (LSBGs) are diffuse, often dark-matter-dominated systems whose faintness makes their structural parameters difficult to measure reliably in wide-field imaging surveys. Robust parameter inference, including uncertainty quantification, is important for population studies and for comparisons with models of galaxy formation, as future surveys are expected to produce increasingly large samples of diffuse galaxies. In practice, LSBG profile modeling is sensitive to sky- background errors, masking choices, contaminating background sources, and the computational cost of obtaining posterior-level uncertainties for large samples. Motivated by these questions, we develop a simulation-based inference (SBI) framework for estimating posterior distributions of LSBG morphological parameters from simulated galaxy images. Using PyImfit, we generate DES-like single-Sersic profile LSBG images with known position angle, ellipticity, Sersic index, effective surface brightness, and effective radius. We then train a normalizing-flow-based neural posterior estimator using the sbi package to infer these parameters from the simulated images. For isolated simulated galaxies, the SBI posterior recovers the true input parameters, produces posterior predictive residuals consistent with the assumed noise model, and shows good empirical calibration in a DES-motivated test regime. We also compare SBI with PyImfit-based MCMC inference and find broadly comparable posterior constraints, while SBI enables substantially faster posterior sampling after training. Finally, we test robustness to compact background contaminants. A model trained only on isolated galaxies produces undercovered posteriors on contaminated images, whereas training on simulations with variable contaminant positions and fluxes improves calibration across contaminated test sets. These results demonstrate the promise of SBI for scalable, uncertainty-aware LSBG morphology inference, while emphasizing that posterior reliability strongly depends on whether training simulations include relevant observational complications.

Batbayar, Bilguun [U. Chicago (main)]↗

Reference-free structural variant detection in microbiomes via long-read co-assembly graphs

Motivation: The study of bacterial genome dynamics is vital for understanding the mechanisms underlying microbial adaptation, growth, and their impact on host phenotype. Structural variants (SVs), genomic alterations of 50 base pairs or more, play a pivotal role in driving evolutionary processes and maintaining genomic heterogeneity within bacterial populations. While SV detection in isolate genomes is relatively straightforward, metagenomes present broader challenges due to the absence of clear reference genomes and the presence of mixed strains. In response, our proposed method rhea, forgoes reference genomes and metagenome-assembled genomes (MAGs) by encompassing all metagenomic samples in a series (time or other metric) into a single co-assembly graph. The log fold change in graph coverage between successive samples is then calculated to call SVs that are thriving or declining. Results: We show rhea to outperform existing methods for SV and horizontal gene transfer (HGT) detection in two simulated mock metagenomes, particularly as the simulated reads diverge from reference genomes and an increase in strain diversity is incorporated. We additionally demonstrate use cases for rhea on series metagenomic data of environmental and fermented food microbiomes to detect specific sequence alterations between successive time and temperature samples, suggesting host advantage. Our approach leverages previous work in assembly graph structural and coverage patterns to provide versatility in studying SVs across diverse and poorly characterized microbial communities for more comprehensive insights into microbial gene flux.

59 BASIC BIOLOGICAL SCIENCES↗

A genomic analysis reveals the diversity of cellulosome displaying bacteria

Introduction Several species of cellulolytic bacteria display cellulosomes, massive multi-cellulase containing complexes that degrade lignocellulosic plant biomass (LCB). A greater understanding of cellulosome structure and enzyme content could facilitate the development of new microbial-based methods to produce renewable chemicals and materials. Methods To identify novel cellulosome-displaying microbes we searched 305,693 sequenced bacterial genomes for genes encoding cellulosome proteins; dockerin-fused glycohydrolases (DocGHs) and cohesin domain containing scaffoldins. Results and discussion This analysis identified 33 bacterial species with the genomic capacity to produce cellulosomes, including 10 species not previously reported to produce these complexes, such asAcetivibrio mesophilus. Cellulosome-producing bacteria primarily originate from theAcetivibrio, Ruminococcus, Ruminiclostridium, andClostridiumgenera. A rigorous analysis of their enzyme, scaffoldin, dockerin, and cohesin content reveals phylogenetically conserved features. Based on the presence of a high number of genes encoding both scaffoldins and dockerin-fused GHs, the cellulosomes inAcetivibrioandRuminococcusbacteria possess complex architectures that are populated with a large number of distinct LCB degrading GH enzymes. Their complex cellulosomes are distinguishable by their mechanism of attachment to the cell wall, the structures of their primary scaffoldins, and by how they are transcriptionally regulated. In contrast, bacteria in theRuminiclostridiumandClostridiumgenera produce ‘simple’ cellulosomes that are constructed from only a few types of scaffoldins that based on their distinct complement of GH enzymes are predicted to exhibit high and low cellulolytic activity, respectively. Collectively, the results of this study reveal conserved and divergent architectural features in bacterial cellulosomes that could be useful in guiding ongoing efforts to harness their cellulolytic activities for bio-based chemical and materials production.

Microbiology↗

Generation of Venus' nightside ionospheric structure by particle streams from cosmoids

A newly discovered source of energetic particle streams directed at Venus' nightside may cause several exosphere phenomena. The streams evolve from dispersed cosmoids, a surreptitious population of meteoroids in nearly hyperbolic orbits, measured with three dust experiments on Pioneer 10/11. Loose fragile comet-like ensembles of frozen volatile material, they are orders of magnitude more populous than short-period meteoroids. Dispersion is forced near a planet masking the meteor signature at Earth, but recently terrestrial exosphere interactions have been detected principally from VLF radar returns and as suddenly formed layers of neutral sodium and iron probed by lidar. Venus influx is estimated greater than 10(exp -14)(g)/((sq cm)(s)) with nightside directed kinetic power of greater than 0.3 (erg)/((sq cm)s)). Compared to Earth, Venus, lacking a dipole field with almost no rotation, has a readily recognized set of nightside interaction signatures of these downward energetic particle streams: i.e., density depressions of the neutral thermosphere, hydrogen and helium bulges, a non-disappearing ionosphere, electron holes, nightglows, VLF bursty signals, and local magnetic fields. From Pioneer Venus Orbiter (PVO) measurements, the cosmoid population, its temporal and solar azimuthal variation may be determined.

Dubin, M.↗

Parameter estimation techniques based on optimizing goodness-of-fit statistics for structural reliability

New methods are presented that utilize the optimization of goodness-of-fit statistics in order to estimate Weibull parameters from failure data. It is assumed that the underlying population is characterized by a three-parameter Weibull distribution. Goodness-of-fit tests are based on the empirical distribution function (EDF). The EDF is a step function, calculated using failure data, and represents an approximation of the cumulative distribution function for the underlying population. Statistics (such as the Kolmogorov-Smirnov statistic and the Anderson-Darling statistic) measure the discrepancy between the EDF and the cumulative distribution function (CDF). These statistics are minimized with respect to the three Weibull parameters. Due to nonlinearities encountered in the minimization process, Powell's numerical optimization procedure is applied to obtain the optimum value of the EDF. Numerical examples show the applicability of these new estimation methods. The results are compared to the estimates obtained with Cooper's nonlinear regression algorithm.

Starlinger, Alois↗

Populating the Hydrogen Component Reliability Database (HYCRED) with Incident Data from Hydrogen Dispensing

Safety, risk, and reliability issues are vital to ensure the continuous and profitable operation of hydrogen technologies. Quantitative risk assessment (QRA) has been used to enable the safe deployment of engineering systems, especially hydrogen fueling stations. However, QRA studies require reliability data which are essential to collect to make the studies as realistic and relevant as possible. These data are currently lacking and data from other industries, such as oil and gas, are used in hydrogen system QRAs. This may lead to inaccurate results since hydrogen fueling stations have differences in physical properties, system design, and operational parameters when compared to other fueling stations, thus necessitating new data sources are necessary to capture the effects of these differences. To address this gap, we developed a structure for a hydrogen component reliability database, (HyCReD) [1], which could be used to generate reliability data to be used in QRA studies. In this paper, we demonstrate populating the HyCReD database with information extracted from new narrative reports on hydrogen fueling station incidents, specifically focused on the dispensing processes. We analyze five new events and demonstrate the feasibility of populating the database and types of meaningful insights that can be obtained at this stage.

component reliability↗

Constraining Warm Dark Matter and Population III Stars with the Global 21 cm Signal

Upcoming ground- and space-based experiments may have sufficient accuracy to place significant constraints upon high-redshift star formation, Reionization, and dark matter (DM) using the global 21 cm signal of the intergalactic medium. In the early universe, when the relative abundance of low-mass DM halos was important, measuring the global signal would place constraints on the damping of structure formation caused by DM having a higher relic velocity (warm dark matter, or WDM) than in cold dark matter. Such damping, however, can be mimicked by altering the star formation efficiency (SFE) and can be difficult to detect because of the presence of Population III stars with unknown properties. We study these various cases and their degeneracies with the WDM mass parameter mX using a Fisher matrix analysis. We study the mX = 7 keV case and a star formation model that parameterizes the SFE as a strong function of halo mass and include several variations of this model along with three different input noise levels for the likelihood; we also use a minimum halo virial temperature for collapse near the molecular cooling threshold. We find that when the likelihood includes only Population II stars, mX is constrained to an uncertainty of ∼0.4 keV for all models and noise levels at the 68% confidence level. When the likelihood includes weak Population III stars, mX ∼ 0.3 keV, and if Population III star formation is relatively efficient, mX ∼ 0.1 keV uncertainty, with tight Population III star formation parameter constraints. Our results show that the global 21 cm signal is a promising test-bed for WDM models, even in the presence of strong degeneracies with astrophysical parameters.

Cosmology↗

Cluster structure of 3⁢𝛼+𝑝 states in 13 N

Cluster states in 13 N are extremely difficult to measure due to the unavailability of 9 B +𝛼 elastic-scattering data. Using 𝛽-delayed charged-particle spectroscopy of 13 O, clustered states in 13 N can be populated and measured in the 3⁢𝛼+𝑝 decay channel. One-at-a-time implantation and decay of 13 O was performed with the Texas Active Target Time Projection Chamber. 149⁢𝛽⁢3⁢𝛼⁢𝑝 decay events were observed and the excitation function in 13 N reconstructed. Four previously unknown 𝛼-decaying excited states were observed in 13 N at an excitation energy of 11.3, 12.4, 13.1, and 13.7 MeV decaying via the 3⁢𝛼+𝑝 channel. These states are seen to have a [ 9 B ⁡(g.s) ⁢⨂𝛼/𝑝 + 12 C ⁡(0$^+_2$)], [ 9 B ⁡($\frac{1}{2}$ + )⁢ ⨂𝛼], [ 9 B ⁡($\frac{5}{2}$ + )⁢ ⨂𝛼], and [ 9 B⁡ ($\frac{5}{2}$) ⁢⨂𝛼] structure, respectively. A previously seen state at 11.8 MeV was also determined to have a [𝑝+ 12 C ⁡(g.s.)/𝑝+ 12 C ⁡(0$^+_2$)] structure. The overall magnitude of the clustering is not able to be extracted, however, due to the lack of a total width measurement. Clustered states in 13 N (with unknown magnitude) seem to persist from the addition of a proton to the highly 𝛼-clustered 12 C . Evidence of the $\frac{1}{2}$ + state in 9 B was also seen to be populated by decays from 13 N ★ .

Physics↗

Use of lunar regolith as a substrate for plant growth

Regenerative Life Support Systems (RLSS) will be required to regenerate air, water, and wastes, and to produce food for human consumption during long-duration missions to the Moon and Mars. It may be possible to supplement some of the materials needed for a lunar RLSS from resources on the Moon. Natural materials at the lunar surface may be used for a variety of lunar RLSS needs, including (1) soils or solid-support substrates for plant growth, (2) sources for extraction of essential, plant-growth nutrients, (3) substrates for microbial populations in the degradation of wastes, (4) sources of O2 and H2, which may be used to manufacture water, (5) feed stock materials for the synthesis of useful minerals (e.g., molecular sieves), and (6) shielding materials surrounding the outpost structure to protect humans, plants, and microorganisms from harmful radiation. Use of indigenous lunar regolith as a terrestrial-like soil for plant growth could offer a solid support substrate, buffering capacity, nutrient source/storage/retention capabilities, and should be relatively easy to maintain. The lunar regolith could, with a suitable microbial population, play a role in waste renovation; much like terrestrial waste application directly on soils. Issues associated with potentially toxic elements, pH, nutrient availability, air and fluid movement parameters, and cation exchange capacity of lunar regolith need to be addressed before lunar materials can be used effectively as soils for plant growth.

Ming, D. W.↗

Thiocyanate Ions Form Antiparallel Populations at the Concentrated Electrolyte/Charged Surfactant Interface

Anions play significant roles in the separation of lanthanides and actinides. The molecular-scale details of how these anions behave at aqueous interfaces are not well understood, especially at high ionic strengths. Here, we describe the interfacial structure of thiocyanate anions at a soft charged interface up to 5 M bulk concentration with combined classical and phase-sensitive and molecular dynamics (MD) simulations. At low concentrations thiocyanate ions are mostly oriented with their sulfur end pointing toward the charged surfactants. In this work, the VSFG signal reaches a plateau at around 100 mM bulk concentration, followed by significant changes above 1 M. At high concentrations a new thiocyanate population emerges with their sulfur end pointing toward the bulk liquid. The –CN stretch frequency is different for up and down oriented SCN – ions, indicating different coordination environments. These results provide key molecular-level insights for the interfacial behavior of complex anions in highly concentrated solutions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Ultrafast Dynamics of Excited Electronic States in Nitrobenzene Measured by Ultrafast Transient Polarization Spectroscopy

We investigate ultrafast dynamics of the lowest singlet excited electronic state in liquid nitrobenzene using ultrafast transient polarization spectroscopy, extending the well-known technique of optical Kerr effect spectroscopy to excited electronic states. The third-order nonlinear response of the excited molecular ensemble is measured using a pair of femtosecond pulses following a third femtosecond pulse that populates the S 1 excited state. By measuring this response, which is highly sensitive to details of the excited state character and structure, as a function of time delays between the three pulses involved, we extract the dephasing time of the wave packet on the excited state. The dephasing time, measured as a function of time delay after pump excitation, shows oscillations indicating oscillatory wave packet dynamics on the excited state. Finally, from the experimental measurements and supporting theoretical calculations, we deduce that the wave packet completely leaves the S 1 state potential energy surface after three traversals of the intersystem crossing between the singlet S 1 and triplet T 2 states.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗