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Cupriavidus basilensis SRS was isolated from stream sediments from the Savannah River Site in South Carolina. Here, we report the draft genome sequence and annotation of Cupriavidus basilensis SRS. The genome contains 8,918,236 bp and 7,916 predicted protein-coding genes, with a total G+C content of 65.2%.
We present the novel implementation of a non-differentiable metric approximation and a corresponding loss-scheduling aimed at the search for new particles of unknown mass in high energy physics experiments. We call the loss-scheduling, based on the minimisation of a figure-of-merit related function typical of particle physics, a Punzi-loss function, and the neural network that utilises this loss function a Punzi-net. We show that the Punzi-net outperforms standard multivariate analysis techniques and generalises well to mass hypotheses for which it was not trained. This is achieved by training a single classifier that provides a coherent and optimal classification of all signal hypotheses over the whole search space. Our result constitutes a complementary approach to fully differentiable analyses in particle physics. We implemented this work using PyTorch and provide users full access to a public repository containing all the codes and a training example.
This manual describes the use of PETSc for the numerical solution of partial differential equations and related problems on high-performance computers. The Portable, Extensible Toolkit for Scientific Computation (PETSc) is a suite of data structures and routines that provide the building blocks for the implementation of large-scale application codes on parallel (and serial) computers. PETSc uses the MPI standard for all message-passing communication. PETSc includes an expanding suite of parallel linear solvers, nonlinear solvers, and time integrators that may be used in application codes written in Fortran, C, C++, and Python. PETSc provides many of the mechanisms needed within parallel application codes, such as parallel matrix and vector assembly routines. The library is organized hierarchically, enabling users to employ the level of abstraction that is most appropriate for a particular problem. By using techniques of object-oriented programming, PETSc provides enormous flexibility for users. PETSc is a sophisticated set of software tools; as such, for some users it initially has a much steeper learning curve than a simple subroutine library. In particular, for individuals without some computer science background, experience programming in C, C++, python, or Fortran and experience using a debugger such as gdb or dbx, it may require a significant amount of time to take full advantage of the features that enable efficient software use. However, the power of the PETSc design and the algorithms it incorporates may make the efficient implementation of many application codes simpler than \rolling them" yourself.
FASTER code for significantly reducing ducted reactor shield computation time for neutron number spectrum
It is shown that the metric proposed originally by Fano for sequential decoding is precisely the required statistic for minimum-error-probability decoding of variable-length codes. The analysis shows further that the 'natural' choice of bias in the metric is the code rate and gives insight into why the Fano metric has proved to be the best practical choice in sequential decoding. The recently devised Jelinek-Zigangirov 'stack algorithm' is shown to be a natural consequence of this interpretation of the Fano metric. Finally, it is shown that the elimination of the bias in the 'truncated' portion of the code tree gives a slight reduction in average computation at the sacrifice of increased error probability.
A computer program for calculating quasi-one-dimensional gas flow in axisymmetric and two-dimensional nozzles and rectangular channels is presented. Flow is assumed to start from a state of thermochemical equilibrium at a high temperature in an upstream reservoir. The program provides solutions based on frozen chemistry, chemical equilibrium, and nonequilibrium flow with finite reaction rates. Electronic nonequilibrium effects can be included using a two-temperature model. An approximate laminar boundary layer calculation is given for the shear and heat flux on the nozzle wall. Boundary layer displacement effects on the inviscid flow are considered also. Chemical equilibrium and transport property calculations are provided by subroutines. The code contains precoded thermochemical, chemical kinetic, and transport cross section data for high-temperature air, CO2-N2-Ar mixtures, helium, and argon. It provides calculations of the stagnation conditions on axisymmetric or two-dimensional models, and of the conditions on the flat surface of a blunt wedge. The primary purpose of the code is to describe the flow conditions and test conditions in electric arc heated wind tunnels.
Equilibrium thermodynamic properties for pure ammonia were generated for a range of temperature from 500 to 50,000 K and pressure from 0.01 to 40 MN/sq m and are presented in tabulated and graphical form. Properties include pressure, temperature, density, enthalpy, speed of sound, entropy, molecular-weight ratio, specific heat at constant pressure, specific heat at constant volume, isentropic exponent, and species mole fractions. These properties were calculated by the method which is based on minimization of the Gibbs free energy. The data presented herein are for an 18-species ammonia model. Heats of formation and spectroscopic constants used as input data are presented. Comparison of several thermodynamic properties calculated with the present program and a second computer code is performed for a range of pressure and for temperatures up to 30,000 K.
In a spread-spectrum communication system, a data sequence of +1's and -1's is expanded into a sequence of +x's (bottom bar) and -x's (bottom bar) where x (bottom bar) is a length n sequence of +1's and -1's. A sub-baud code is the assignment of a different such baud sequence to each of M users with the objective of reducing interference between users. It is shown that this interference can be described in terms of the even and odd correlation functions between pairs of sequences. A technique for deriving sub-baud codes from cyclic error-correcting codes is given, and a theorem proved which bounds the quality of the resultant code. A specific such cyclic code construction procedure is given which, for any M, yields a sub-baud code for which the mutual interference can be made arbitrarily small by choosing n sufficiently large.
An investigation of the transonic flow over a circular arc airfoil was conducted to obtain basic information for turbulence modeling of shock-induced separated flows and to verify numerical computer codes which are being developed to simulate such flows. The investigation included the employment of a laser velocimeter to obtain data concerning the mean velocity, the shear stress, and the turbulent kinetic energy profiles in the flowfield downstream of the airfoil midchord where the flow features are more complex. Depending on the free-stream Mach number, the flowfield developed was either steady with shock-wave-induced separation extending from the foot of the shock wave to beyond the trailing edge or unsteady with a periodic motion also undergoing shock-induced separation. The experimental data were compared with the results of numerical simulations in which a computer code was employed that solved the time-dependent Reynolds' averaged compressible Navier-Stokes equations.
It is demonstrated that the shuttle entry trajectory can be accurately represented in ENTREE with IMU data available postflight. The IMU data consist of platform to body quaternions, and accumulated sensed velocities in mean of fifty (M50) coordinates approximately every second. The preprocessing software required to incorporate the IMU data in ENTREE is described as well as the relatively minor code changes to the ENTREE program itself required to process the IMU data. Code changes to the ENTREE program and input tape data format and content changes are described.
The principal of multiple material layering is well known as an effective method of reducing heat transfer; however, thermal gradients can impose significant loads and lead to delamination and subsequent component failure. An analysis is developed and experimental data are discussed for the thermomechanical effects of multilayered materials on a heat sink substrate of cylindrical geometry subject to thermal cycling. The geometry is heated in cross-flow by a high-velocity flame and cooled in crossflow by ambient-temperature air from a critical flow orifice. Each layer of material possesses a threshold beyond which small changes in temperature or mechanical loading greatly influence the life in thermal cycling of the layered materials. Comparisons are made between the thermomechanical loads predicted by various numerical codes for the linear case and by a simplified analytic model.
Recommendations being developed by the NASA-ESA Working Group (NEWG) for Space Data Systems Standardization and the Consultative Committee for Space Data Systems (CCSDS) to standardize spacecraft telemetry and command coding are characterized. The telemetry convolutional codes used by JPL, ESA, and GSFC are found to be similar but incompatible, and it is recommended that a secondary capability for the other two schemes be developed at each facility, with the GSFC scheme as the ultimate standard, a periodic convolutional interleaving procedure for use with the NASA Tracking and Data Relay Satellite, and an optional concatenation of the convolutional code with a Reed-Solomon code to achieve up to 6.8 dB of gain. The telecommand-coding approach adopted by CCSDS is based on the schemes in use at JPL and GSFC.
A concatenated coding consisting of an inner (7, 1/2) convolutional code and an outer (255, 223) Reed-Solomon code was recommended by the Consultative Committee for Space Data Systems for cross-supported space missions. The Reed-Solomon code that was chosen makes use of the Berlekamp encoding algorithm. Some peculiarities of this code that could give rise to synchronization problems are examined. Suggestions are given to alleviate these problems.
Local heat transfer coefficients were experimentally mapped along the midchord of a five-time-size turbine blade airfoil in a static cascade operated at room temperature over a range of Reynolds numbers. The test surface consisted of a composite of commercially available materials: a mylar sheet with a layer of cholesteric liquid crystals, that change color with temperature, and a heater sheet made of a carbon-impregnated paper, that produces uniform heat flux. After the initial selection and calibration of the composite sheet, accurate, quantitative, and continuous heat transfer coefficients were mapped over the airfoil surface. The local heat transfer coefficients are presented for Reynolds numbers from 2.8 x 10 to the 5th power to 7.6 x 10 to the 5th power. Comparisons are made with analytical values of heat transfer coefficients obtained from the STAN5 boundary layer code. Also, a leading edge separation bubble was revealed by thermal and flow visualization.
Local heat transfer coefficients were experimentally mapped along the midchord of a five-time-size turbine blade airfoil in a static cascade operated at room temperature over a range of Reynolds numbers. The test surface consisted of a composite of commercially available materials: a mylar sheet with a layer of cholesteric liquid crystals, that change color with temperature, and a heater sheet made of a carbon-impregnated paper, that produces uniform heat flux. After the initial selection and calibration of the composite sheet, accurate, quantitative, and continuous heat transfer coefficients were mapped over the airfoil surface. The local heat transfer coefficients are presented for Reynolds numbers from 2.8 x 10 to the 5th power to 7.6 x 10 to the 5th power. Comparisons are made with analytical values of heat transfer coefficients obtained from the STANS boundary layer code. Also, a leading edge separation bubble was revealed by thermal and flow visualization.
The report documents the task planning and software development phases of an effort to obtain twenty versions of code independently designed and developed from a common specification. These versions were created for use in future experiments in software fault tolerance, in continuation of the experimental series underway at the Systems Validation Methods Branch (SVMB) at NASA Langley Research Center. The 20 versions were developed under controlled conditions at four U.S. universities, by 20 teams of two researchers each. The versions process raw data from a modified Redundant Strapped Down Inertial Measurement Unit (RSDIMU). The specifications, and over 200 questions submitted by the developers concerning the specifications, are included as appendices to this report. Design documents, and design and code walkthrough reports for each version, were also obtained in this task for use in future studies.
Computational fluid dynamics code validation requirements are discussed together with the need for close interaction between experiment and code development. Code validation experiments require a great deal of data and for the experiments to be successful, a highly-productive research facility is required. A description is provided of the NASA Langley Basic Aerodynamics Research Tunnel (BART); especially the instrumentation and experimental techniques that make the facility ideally suited to code validation experiments. Results are presented from recent tests which illustrate the techniques used in BART.
The architecture and implementation of a VLSI chip set that vector quantizes (VQ) image sequences in real time is described. The chip set forms a programmable Single-Instruction, Multiple-Data (SIMD) machine which can implement various vector quantization encoding structures. Its VQ codebook may contain unlimited number of codevectors, N, having dimension up to K = 64. Under a weighted least squared error criterion, the engine locates at video rates the best code vector in full-searched or large tree searched VQ codebooks. The ability to manipulate tree structured codebooks, coupled with parallelism and pipelining, permits searches in as short as O (log N) cycles. A full codebook search results in O(N) performance, compared to O(KN) for a Single-Instruction, Single-Data (SISD) machine. With this VLSI chip set, an entire video code can be built on a single board that permits realtime experimentation with very large codebooks.