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At least 757 records · Page 42

A comparison of model validation approaches for echo state networks using climate model replicates

As global temperatures continue to rise, climate mitigation strategies such as stratospheric aerosol injections (SAI) are increasingly discussed, but the downstream effects of these strategies are not well understood. As such, there is interest in developing statistical methods to quantify the evolution of climate variable relationships during the time period surrounding an SAI. Feature importance applied to echo state network (ESN) models has been proposed as a way to understand the effects of SAI using a data-driven model. This approach depends on the ESN fitting the data well. If not, the feature importance may place importance on features that are not representative of the underlying relationships. Typically, time series prediction models such as ESNs are assessed using out-of-sample performance metrics that divide the times series into separate training and testing sets. However, this model assessment approach is geared towards forecasting applications and not scenarios such as the motivating SAI example where the objective is using a data driven model to capture variable relationships. Here, in this paper, we demonstrate a novel use of climate model replicates to investigate the applicability of the commonly used repeated hold-out model assessment approach for the SAI application. Simulations of an SAI are generated using a simplified climate model, and different initialization conditions are used to provide independent training and testing sets containing the same SAI event. The climate model replicates enable out-of-sample measures of model performance, which are compared to the single time series hold-out validation approach. For our case study, it is found that the repeated hold-out sample performance is comparable, but conservative, to the replicate out-of-sample performance when the training set contains enough time after the aerosol injection.

54 ENVIRONMENTAL SCIENCES↗

Identifying Different Classes of Seismic Noise Signals Using Unsupervised Learning

Abstract Proper classification of nontectonic seismic signals is critical for detecting microearthquakes and developing an improved understanding of ongoing weak ground motions. We use unsupervised machine learning to label five classes of nonstationary seismic noise common in continuous waveforms. Temporal and spectral features describing the data are clustered to identify separable types of emergent and impulsive waveforms. The trained clustering model is used to classify every 1 s of continuous seismic records from a dense seismic array with 10–30 m station spacing. We show that dominate noise signals can be highly localized and vary on length scales of hundreds of meters. The methodology demonstrates the complexity of weak ground motions and improves the standard of analyzing seismic waveforms with a low signal‐to‐noise ratio. Application of this technique will improve the ability to detect genuine microseismic events in noisy environments where seismic sensors record earthquake‐like signals originating from nontectonic sources.

Johnson, Christopher W.↗

Predictive Models of Genetic Redundancy in Arabidopsis thaliana

Abstract Genetic redundancy refers to a situation where an individual with a loss-of-function mutation in one gene (single mutant) does not show an apparent phenotype until one or more paralogs are also knocked out (double/higher-order mutant). Previous studies have identified some characteristics common among redundant gene pairs, but a predictive model of genetic redundancy incorporating a wide variety of features derived from accumulating omics and mutant phenotype data is yet to be established. In addition, the relative importance of these features for genetic redundancy remains largely unclear. Here, we establish machine learning models for predicting whether a gene pair is likely redundant or not in the model plant Arabidopsis thaliana based on six feature categories: functional annotations, evolutionary conservation including duplication patterns and mechanisms, epigenetic marks, protein properties including posttranslational modifications, gene expression, and gene network properties. The definition of redundancy, data transformations, feature subsets, and machine learning algorithms used significantly affected model performance based on holdout, testing phenotype data. Among the most important features in predicting gene pairs as redundant were having a paralog(s) from recent duplication events, annotation as a transcription factor, downregulation during stress conditions, and having similar expression patterns under stress conditions. We also explored the potential reasons underlying mispredictions and limitations of our studies. This genetic redundancy model sheds light on characteristics that may contribute to long-term maintenance of paralogs, and will ultimately allow for more targeted generation of functionally informative double mutants, advancing functional genomic studies.

59 BASIC BIOLOGICAL SCIENCES↗

Neighborhood sociome factors and pediatric asthma exacerbations: Protective role of tree crown density and importance of pharmacy access in Chicago's south side

Abstract Background Pediatric asthma exacerbations remain a critical public health concern, particularly in historically underserved urban settings. Objective This study investigates sociome factors—the social context of disease—associated with asthma exacerbations among children living in Chicago's South Side, leveraging clinical and publicly available generalizable census tract‐level datasets from agencies including ChiVes, the City of Chicago Data Portal, EPA, Census Bureau, HUD, NOAA, and more. The aim is to uncover novel hypotheses for potential new interventions. Methods A generalized linear model assessed associations with the outcome of asthma exacerbations while accounting for clustering at the patient level. Predictors included all variables from the Sociome Data Commons, including social, environmental, behavioral, economic, housing, and school variables. Results Predictors of decreased risk included patient age (+4.8 years, −22%), tree crown density (+6% coverage, −17%), parks per acre (+0.41, −8%), and labor market engagement (+0.8 points, −9%). Conversely, predictors of increased risk included increased distance to the nearest pharmacy (+0.28 miles, +12%), limited English skills (+2.3%, +10%), higher inequality (+0.08 points, +8%), and visits in the Spring (+11%) and Fall (+20%). Conclusion The results suggest that tree crown density, a novel finding in the context of asthma exacerbations, may play a protective role. Limited access to health care facilities such as pharmacies continues to complicate care. Clinical Implications These findings provide hypotheses for future interventions for long‐standing asthma disparities.

Allergy↗

Spent Nuclear Fuel Mechanical Loads in the General Package Drop Scenario

The US Department of Energy Spent Fuel and Waste Science and Technology program is performing research to determine the mechanical loading conditions applied to spent nuclear fuel (SNF) during normal conditions of transportation to inform mechanical tests of SNF and close an important knowledge gap related to the practical disposition of SNF in the US. A recent multi-national collaborative test campaign measured SNF assembly impact response to the 30 cm horizontal package drop scenario, which is a common regulatory basis test of SNF package design. Researchers at Pacific Northwest National Laboratory (PNNL) are using the test data to validate explicit finite element models to calculate the mechanical loads and structural response of spent nuclear fuel assemblies in the as-tested 30 cm horizontal package drop scenario. Once the as-tested package drop model is validated, the next step is to apply the model to the general 30 cm drop scenario, which includes all impact angles, all fuel assembly types, and all burnup conditions. PNNL is developing a damage model that will incorporate the results of finite element parametric studies to establish trends in SNF mechanical loading to various input parameters, like impact orientation and burnup. The damage model will have the capability to estimate mechanical loads for any single set of input parameters, but it will first be used to describe the upper bounds of potential SNF loading in the 30 cm drop scenario. This paper describes PNNL’s progress toward developing the general solution to the problem of spent nuclear fuel mechanical loads in the 30 cm package drop scenario and it describes the next steps in closing the knowledge gap.

Klymyshyn, Nicholas A.↗

Identifying Suspect Instrument Intervals Using Midnight Noise Time Histories

With an intense work ethic, and high levels of devotion to their craft, seismologists continue to battle the elements and wrestle with complex logistics in their efforts to field instrumentation over the entire globe. We are fortunate to see data volumes accelerating in size, and quality continuing to improve; for example, universal timing issues can now be considered rare. However, instrument response issues are still common, and can hinder research that seeks to understand amplitudes of seismic wavefields. We are interested in using the accumulations of seismic data to develop models that will predict high frequency (0.2-20 Hz, and higher) signal amplitudes for explosion monitoring purposes over broad areas, which requires large data sets and extensive quality control. To identify response and station health issues, we have collected noise time histories for global seismic data, focusing on measurements near (but not restricted to) midnight to eliminate diurnal variations, and have manually determined time intervals that appear inconsistent with background behavior. We assign descriptive labels, but do not attempt to diagnose causes. We use these intervals to discard data. To date, we have examined 39,260 channels from 11,105 stations, heavily weighted toward IRIS holdings, dates through 2017 (depending on station, roughly the date we started our manual review), bands between 1 and 8 Hz, finding 24,733 anomalous time intervals. The great majority (90%) of these intervals appear to be shifts of constant offset, often bounded by times of known instrument changes, likely the result of poor documentation of response parameters at one of many stages between the field and the plotter. We hope these results can be of use to our colleagues, and would encourage community efforts to diagnose anomalous behavior, and fix poor responses. We also hope these results will support automation efforts, including application of supervised learning techniques.

47 OTHER INSTRUMENTATION↗

Machine Learning with Gradient-Based Optimization of Nuclear Waste Vitrification with Uncertainties and Constraints

Gekko is an optimization suite in Python that solves optimization problems involving mixed-integer, nonlinear, and differential equations. The purpose of this study is to integrate common Machine Learning (ML) algorithms such as Gaussian Process Regression (GPR), support vector regression (SVR), and artificial neural network (ANN) models into Gekko to solve data based optimization problems. Uncertainty quantification (UQ) is used alongside ML for better decision making. These methods include ensemble methods, model-specific methods, conformal predictions, and the delta method. An optimization problem involving nuclear waste vitrification is presented to demonstrate the benefit of ML in this field. ML models are compared against the current partial quadratic mixture (PQM) model in an optimization problem in Gekko. GPR with conformal uncertainty was chosen as the best substitute model as it had a lower mean squared error of 0.0025 compared to 0.018 and more confidently predicted a higher waste loading of 37.5 wt% compared to 34 wt%. The example problem shows that these tools can be used in similar industry settings where easier use and better performance is needed over classical approaches. Future works with these tools include expanding them with other regression models and UQ methods, and exploration into other optimization problems or dynamic control.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

The role of knowledge structures in fault diagnosis

The use of human memory and knowledge structures to direct fault diagnosis performance was investigated. The performances of 20 pilots with instrument flight ratings were studied in a fault diagnosis task. The pilots were read a scenario which described flight conditions under which the symptoms which are indicative of a problem were detected. They were asked to think out loud as they requested and interpreted various pieces of information to diagnose the cause of the problem. Only 11 of the 20 pilots successfully diagnosed the problem. Pilot performance on this fault diagnosis task was modeled in the use of domain specific knowledge organized in a frame system. Eighteen frames, with a common structure, were necessary to account for the data from all twenty subjects.

Smith, P. J.↗

MST data exchange through the NCAR incoherent-scatter radar data base

One means of making MST (mesosphere stratosphere troposphere) radar data more easily accessible for scientific research by the general scientific community is through a centralized data base. Such a data base can be designed to readily provide information on data availability and quality, and to provide copies of data from any radar in a common format to the user. The ionospheric incoherent scatter community has established a centralized data base at NCAR that may serve not only as a model for a possible MST data base, but also as a catalyst for getting an MST data base started. (Some key elements of the NCAR data base are given.) The NCAR data base can include MST data in the same framework with relatively little extra effort. They are willing to handle MST data on a limited basis in order to permit assessment of community interest and in order to provide some experience with a centralized data base for MST data.

Richmond, A. D.↗

Intermediate Temperature Strength Degradation in SiC/SiC Composites

Woven silicon carbide fiber-reinforced, silicon carbide matrix composites are leading candidate materials for an advanced jet engine combustor liner application. Although the use temperature in the hot region for this application is expected to exceed 1200 C, a potential life-limiting concern for this composite system exists at intermediate temperatures (800 +/- 200 C), where significant time-dependent strength degradation has been observed under stress-rupture loading. A number of factors control the degree of stress-rupture strength degradation, the major factor being the nature of the interphase separating the fiber and the matrix. BN interphases are superior to carbon interphases due to the slower oxidation kinetics of BN. A model for the intermediate temperature stress-rupture of SiC/BN/SiC composites is presented based on the observed mechanistic process that leads to strength degradation for the simple case of through-thickness matrix cracks. The approach taken has much in common with that used by Curtin and coworkers, for two different composite systems. The predictions of the model are in good agreement with the rupture data for stress-rupture of both precracked and as-produced composites. Also, three approaches that dramatically improve the intermediate temperature stress-rupture properties are described: Si-doped BN, fiber spreading, and 'outside debonding'.

Morscher, Gregory N.↗

Near-Infrared (0.67-4.7 microns) Optical Constants Estimated for Montmorillonite

Various models of the reflectance from particulate surfaces are used for interpretation of remote sensing data of solar system objects. These models rely upon the real (n) and imaginary (k) refractive indices of the materials. Such values are limited for commonly encountered silicates at visual and near-infrared wavelengths (lambda, 0.4-5 microns). Availability of optical constants for candidate materials allows more thorough modeling of the observations obtained by Earth-based telescopes and spacecraft. Two approaches for determining the absorption coefficient (alpha=2pik/lambda) from reflectance measurements of particulates have been described; one relies upon Kubelka-Munk theory and the other Hapke theory. Both have been applied to estimate alpha and k for various materials. Neither enables determination of the wavelength dependence of n, n=f(lambda). Thus, a mechanism providing this ability is desirable. Using Hapke-theory to estimate k from reflectance measurements requires two additional quantities be known or assumed: 1) n=f(lambda) and 2) d, the sample particle diameter. Typically n is assumed constant (c) or modestly varying with lambda; referred to here as n(sub 0). Assuming n(sub 0), at each lambda an estimate of k is used to calculate the reflectance and is iteratively adjusted until the difference between the model and measured reflectance is minimized. The estimated k's (k(sub 1)) are the final results, and this concludes the typical analysis.

Roush, T. L.↗

Near-infrared (0.67-4.7 micron) Optical Constants Estimated for Montmorillonite

Various models of the reflectance from particulate surfaces are used for interpretation of remote sensing data of solar system objects. These models rely upon the real (n) and imaginary (k) refractive indices of the materials. Such values are limited for commonly encountered silicates at visual and near-infrared wavelengths (lambda, 0.4-5 micron). Availability of optical constants for candidate materials allows more thorough modeling of the observations obtained by Earth-based telescopes and spacecraft. Two approaches for determining the absorption coefficient (alpha=2 pi k/lambda) from reflectance measurements of particulates have been described; one relies upon Kubelka-Munk theory and the other Hapke theory. Both have been applied to estimate alpha and k for various materials. Neither enables determination of the wavelength dependence of n, n=f(lambda). Thus, a mechanism providing this ability is desirable. Using Hapke-theory to estimate k from reflectance measurements requires two additional quantities be known or assumed: 1) n=f(lambda) and 2) d, the sample particle diameter. Typically n is assumed constant (c) or modestly varying with lambda; referred to here as n(sub 0). Assuming n(sub 0), at each lambda an estimate of k is used to calculate the reflectance and is iteratively adjusted until the difference between the model and measured reflectance is minimized. The estimated k's (k(sub l)) are the final results, and this concludes the typical analysis. Additional information is included in the original extended abstract.

Roush, T. L.↗

Metrics for Linear Kinematic Features in Sea Ice

The treatment of leads as cracks or discontinuities (see Coon et al. presentation) requires some shift in the procedure of evaluation and comparison of lead-resolving models and their validation against observations. Common metrics used to evaluate ice model skills are by and large an adaptation of a least square "metric" adopted from operational numerical weather prediction data assimilation systems and are most appropriate for continuous fields and Eilerian systems where the observations and predictions are commensurate. However, this class of metrics suffers from some flaws in areas of sharp gradients and discontinuities (e.g., leads) and when Lagrangian treatments are more natural. After a brief review of these metrics and their performance in areas of sharp gradients, we present two new metrics specifically designed to measure model accuracy in representing linear features (e.g., leads). The indices developed circumvent the requirement that both the observations and model variables be commensurate (i.e., measured with the same units) by considering the frequencies of the features of interest/importance. We illustrate the metrics by scoring several hypothetical "simulated" discontinuity fields against the lead interpreted from RGPS observations.

Levy, G.↗

Planck Early Results. XV. Spectral Energy Distributions and Radio Continuum Spectra of Northern Extragalactic Radio Sources

Spectral energy distributions (SEDs) and radio continuum spectra are presented for a northern sample of 104 extragalactic radio sources. based on the Planck Early Release Compact Source Catalogue (ERCSC) and simultaneous multi frequency data. The nine Planck frequencies, from 30 to 857 GHz, are complemented by a set of simultaneous observations ranging from radio to gamma-rays. This is the first extensive frequency coverage in the radio and millimetre domains for an essentially complete sample of extragalactic radio sources, and it shows how the individual shocks, each in their own phase of development, shape the radio spectra as they move in the relativistic jet. The SEDs presented in this paper were fitted with second and third degree polynomials to estimate the frequencies of the synchrotron and inverse Compton (IC) peaks, and the spectral indices of low and high frequency radio data, including the Planck ERCSC data, were calculated. SED modelling methods are discussed, with an emphasis on proper. physical modelling of the synchrotron bump using multiple components. Planck ERCSC data also suggest that the original accelerated electron energy spectrum could be much harder than commonly thought, with power-law index around 1.5 instead of the canonical 2.5. The implications of this are discussed for the acceleration mechanisms effective in blazar shock. Furthermore in many cases the Planck data indicate that gamma-ray emission must originate in the same shocks that produce the radio emission.

Aatrokoski, J.↗

Requirements and Challenges for CFD Validation within the High-Lift Common Research Model Ecosystem

The High-Lift Common Research Model (CRM-HL) ecosystem is envisioned to become an industry standard set of test cases for high-lift aerodynamics prediction, with data generated providing a strong foundation for CFD validation. Since its original development, preliminary wind tunnel tests have been conducted to further understand and configure the geometry, and several more are in the planning phases. It is anticipated that the data generated in these tests will be used extensively by the CFD community for research, development, and validation of new techniques that yield more accurate results. To derive the maximum benefit from planned wind tunnel testing, data acquisition will be focused in several key areas to address specific shortcomings in CFD predictive capabilities. Significant challenges currently exist in areas including, but not limited to, characterizing high-lift flow phenomena, quantifying effects due to configuration changes, understanding wind tunnel and model installation effects, and establishing data uncertainty. This paper will discuss the current state-of-the-art in high-lift CFD prediction, key limitations of current CFD methods and tools, establishing a validation dialog between test and CFD practitioners, and the flow phenomena of highest interest, in an effort to begin to address these challenges. To this end, it is expected that the data generated from CRM-HL tests will form a strong foundation for future predictive capability.

Adam M Clark↗

Efficient Calibration of Expensive Computational Models

Accounting for uncertainty when calibrating expensive computational models is a common challenge faced by scientists and engineers. Often Bayesian techniques are adopted to estimate a probability density function over the model parameters given noisy empirical data. The methods used to perform this type of probabilistic calibration are computationally prohibitive in that they require a large number of evaluations of the expensive model. In these cases, surrogate modeling -- that is, using a fast-to-evaluate, lower fidelity stand-in for the original computational model -- may be the only option to alleviate this computational burden. However, the upfront cost of generating training data to build a surrogate model can itself be expensive. As such, it is important to be judicious when selecting training points at which the full-fidelity model is evaluated. Here, an active learning approach is proposed that enables efficient selection of training points using approximate samples of the calibrated parameter probability density function. In this way, the training points can be concentrated in regions where the calibration algorithm requires high model accuracy.

active learning↗

Constrained curve fitting for semi-parametric models with radial basis function networks

Common to many analysis pipelines in lattice gauge theory and the broader scientific discipline is the need to fit a semi-parametric model to data. We propose a fit method that utilizes a radial basis function network to approximate the non-parametric component of such models. The approximate parametric model is fit to data using the basin hopping global optimization algorithm. Parameter constraints are enforced through Gaussian priors. The viability of our method is tested by examining its use in a finite-size scaling analysis of the $q$-state Potts model and $p$-state clock model with $q=2,3$ and $p=4,\infty$.

Peterson, Curtis T.↗

A Convolution Neural Network for Voltage Event Classification at a Photovoltaic Inverter

This paper presents a convolutional neural network (CNN) developed to identify voltage events in photovoltaic (PV) inverters. The CNN is trained on synthetic data generated using the IEEE 13-bus distribution feeder model and evaluated on field measured data collected from Energy Northwest’s Horn Rapids Solar, Storage, and Training (HRSST) facility. The study focuses on two common voltage events: faults and voltage sags. The CNN is configured to analyze voltage and current waveforms from three-phase PV systems, demonstrating excellent accuracy during training. Field data from the HRSST facility is employed to assess its real-world performance, where the CNN achieves perfect identification of faults and voltage sags in a sample of nine events. This work highlights the potential of the proposed method to enhance PV protection schemes, providing a robust foundation for improved voltage event detection and grid reliability.

Cornachione, Matthew A.↗