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At least 739 records · Page 41
All sourcesNASA NTRSDOE OSTI
NASA NTRS2004

Transgenic plants with increased calcium stores

The present invention provides transgenic plants over-expressing a transgene encoding a calcium-binding protein or peptide (CaBP). Preferably, the CaBP is a calcium storage protein and over-expression thereof does not have undue adverse effects on calcium homeostasis or biochemical pathways that are regulated by calcium. In preferred embodiments, the CaBP is calreticulin (CRT) or calsequestrin. In more preferred embodiments, the CaBP is the C-domain of CRT, a fragment of the C-domain, or multimers of the foregoing. In other preferred embodiments, the CaBP is localized to the endoplasmic reticulum by operatively associating the transgene encoding the CaBP with an endoplasmic reticulum localization peptide. Alternatively, the CaBP is targeted to any other sub-cellular compartment that permits the calcium to be stored in a form that is biologically available to the plant. Also provided are methods of producing plants with desirable phenotypic traits by transformation of the plant with a transgene encoding a CaBP. Such phenotypic traits include increased calcium storage, enhanced resistance to calcium-limiting conditions, enhanced growth and viability, increased disease and stress resistance, enhanced flower and fruit production, reduced senescence, and a decreased need for fertilizer production. Further provided are plants with enhanced nutritional value as human food or animal feed.

Wyatt, Sarah↗
NASA NTRS2009

Understanding Atmospheric Catastrophes

The atmosphere, as in other parts of nature, is full of phenomena that involve rapid transitions from one (quasi-) equilibrium state to another--- i.e. catastrophes. These (quasi-) equilibria are the multiple solutions of the same dynamical system. Unlocking the mystery behind a catastrophe reveals not only the physical mechanism responsible for the transition, but also how the (quasi-) equilibria before and after the transition are maintained. Each catastrophe is different, but they do have some common traits. Understanding these common traits is the first step in studying these catastrophes. In this seminar, three examples chosen based on the speaker's research interest--tropical cyclogenesis, stratospheric sudden warming, and monsoon onset--are given to illustrate how atmospheric catastrophes can be studied.

Chao, Winston C.↗
NASA NTRS2012

Analysis of Dynamic Data from Supersonic Retropropulsion Experiments in NASA Langley's Unitary Plan Wind Tunnel

Recent experimental supersonic retropropulsion tests were conducted at the NASA Langley Research Center Unitary Plan Wind Tunnel Test Section 2 for a range of Mach numbers from 2.4 to 4.6. A 5-inch 70-degree sphere-cone forebody model with a 10-inch cylindrical aftbody experimental model was used which is capable of multiple retrorocket configurations. These configurations include a single central nozzle on the center point of the forebody, three nozzles at the forebody half-radius, and a combination of the first two configurations with no jets being plugged. A series of measurements were achieved through various instrumentation including forebody and aftbody pressure, internal pressures and temperatures, and high speed Schlieren visualization. Specifically, several high speed pressure transducers on the forebody and in the plenum were implemented to look at unsteady flow effects. The following work focuses on analyzing frequency traits due to the unsteady flow for a range of thrust coefficients for single, tri, and quad-nozzle test cases at freestream Mach 4.6 and angle of attack ranging from -8 degrees to +20 degrees. This analysis uses Matlab s fast Fourier transform, Welch's method (modified average of a periodogram), to create a power spectral density and analyze any high speed pressure transducer frequency traits due to the unsteady flow.

Codoni, Joshua R.↗
NASA NTRS2012

Is Water a Universal Solvent for Life?

There are strong reasons to believe that the laws, principles and constraints of physics and chemistry are universal. It is much less clear how this universality translates into our understanding of the origins of life. Conventionally, discussions of this topic focus on chemistry that must be sufficiently rich to seed life. Although this is clearly a prerequisite for the emergence of living systems, I propose to focus instead on self-organization of matter into functional structures capable of reproduction, evolution and responding to environmental changes. In biology, most essential functions are largely mediated by noncovalent interactions (interactions that do not involve making or breaking chemical bonds). Forming chemical bonds is only a small part of what living systems do. There are specific implications of this point of view for universality. I will concentrate on one of these implications. Strength of non-covalent interactions must be properly tuned. If they were too weak, the system would exhibit undesired, uncontrolled response to natural fluctuations of physical and chemical parameters. If they were too strong kinetics of biological processes would be slow and energetics costly. This balance, however, is not a natural property of complex chemical systems. Instead, it has to be achieved with the aid of an appropriate solvent for life. In particular, potential solvents for life must be characterized by a high dielectric constant to ensure solubility of polar species and sufficient flexibility of biological structures stabilized by electrostatic interactions. Among these solvents, water exhibits a remarkable trait that it also promotes solvophobic (hydrophobic) interactions between non-polar species, typically manifested by a tendency of these species to aggregate and minimize their contacts with the aqueous solvent. Hydrophobic interactions are responsible, at least in part, for many self-organization phenomena in biological systems, such as the formation of cellular boundary structures or protein folding. Strengths of electrostatic and hydrophobic interactions are similar and can be balanced over a wide range of temperatures, which considerably increases the repertoire of interactions that can be used to modulate biological functions. Some properties of water, e.g. its chemical activity against polymerization reactions, are considered as unfavorable to life. In actuality, this might be a favorable trait because life requires a balance between constructive and destructive processes. For example, molecules synthesized in response to specific conditions must be degraded once these conditions change. Otherwise regulation of biological processes would be virtually impossible. Water might not be the only liquid with favorable properties for supporting life. It has been proposed that formamide, which might be present elsewhere in the universe in sufficient quantities to warrant interest, could be a potential alternative to water for the origin of life. However, this will remain highly hypothetical until it is demonstrated in further studies on its physical, chemical and biological properties it is capable of mediating self-organization of matter and providing proper balance between different types of non-covalent interactions.

Pohorill, Andrew↗
NASA NTRS2013

Phylogenetic Conservatism in Plant Phenology

Phenological events defined points in the life cycle of a plant or animal have been regarded as highly plastic traits, reflecting flexible responses to various environmental cues. The ability of a species to track, via shifts in phenological events, the abiotic environment through time might dictate its vulnerability to future climate change. Understanding the predictors and drivers of phenological change is therefore critical. Here, we evaluated evidence for phylogenetic conservatism the tendency for closely related species to share similar ecological and biological attributes in phenological traits across flowering plants. We aggregated published and unpublished data on timing of first flower and first leaf, encompassing 4000 species at 23 sites across the Northern Hemisphere. We reconstructed the phylogeny for the set of included species, first, using the software program Phylomatic, and second, from DNA data. We then quantified phylogenetic conservatism in plant phenology within and across sites. We show that more closely related species tend to flower and leaf at similar times. By contrasting mean flowering times within and across sites, however, we illustrate that it is not the time of year that is conserved, but rather the phenological responses to a common set of abiotic cues. Our findings suggest that species cannot be treated as statistically independent when modelling phenological responses.Closely related species tend to resemble each other in the timing of their life-history events, a likely product of evolutionarily conserved responses to environmental cues. The search for the underlying drivers of phenology must therefore account for species' shared evolutionary histories.

phylogenetic conservatism↗
NASA NTRS2012

Incorporating Plant Phenology Dynamics in a Biophysical Canopy Model

The Multi-Layer Canopy Model (MLCan) is a vegetation model created to capture plant responses to environmental change. Themodel vertically resolves carbon uptake, water vapor and energy exchange at each canopy level by coupling photosynthesis, stomatal conductance and leaf energy balance. The model is forced by incoming shortwave and longwave radiation, as well as near-surface meteorological conditions. The original formulation of MLCan utilized canopy structural traits derived from observations. This project aims to incorporate a plant phenology scheme within MLCan allowing these structural traits to vary dynamically. In the plant phenology scheme implemented here, plant growth is dependent on environmental conditions such as air temperature and soil moisture. The scheme includes functionality that models plant germination, growth, and senescence. These growth stages dictate the variation in six different vegetative carbon pools: storage, leaves, stem, coarse roots, fine roots, and reproductive. The magnitudes of these carbon pools determine land surface parameters such as leaf area index, canopy height, rooting depth and root water uptake capacity. Coupling this phenology scheme with MLCan allows for a more flexible representation of the structure and function of vegetation as it responds to changing environmental conditions.

environmental changes↗
NASA NTRS2012

Observing Changing Ecological Diversity in the Anthropocene

As the world enters the Anthropocene, the planet's environment is changing rapidly, putting critical ecosystem services at risk. Understanding and forecasting how ecosystems will change over the coming decades requires understanding the sensitivity of species to environmental change. The extant distribution of species and functional groups contains valuable information about the performance of different species in different environments. However, with high rates of environmental change, information inherent in ranges of many species will disappear, since that information exists only under quasi-equilibrium conditions. The information content of distributional data obtained now is greater than data obtained in the future. New remote sensing technologies can map chemical and structural traits of plant canopies and allow inference of trait and in many cases, species ranges. Current satellite remote sensing data can only produce relatively simple classifications, but new techniques have dramatically higher biological information content.

environmental changes↗
NASA NTRS2019

Assessing Vegetation Function with Imaging Spectroscopy

Healthy vegetation function supports diverse biological communities and ecosystem processes, and provides crops, forest products, forage, and countless other benefits. Vegetation function can be assessed by examining dynamic processes and by evaluating plant traits, which themselves are dynamic. Using both trait-based and process-based approaches, spectroscopy can assess vegetation function at multiple scales using a variety of sensors and platforms ranging from proximal to airborne and satellite measurements. Since spectroscopic data are defined by the instruments and platforms available, along with their corresponding spatial, temporal and spectral scales, and since these scales may not always match those of the function of interest, consideration of scale is a necessary focus. For a full understanding of vegetation processes, combined (multi-scale) sampling methodsusing empirical and theoretical approaches are required, along with improved informatics.

Gamon, J. A.↗
NASA NTRS2019

Diverse Photosynthetic Capacity of Global Ecosystems Mapped by Satellite Chlorophyll Fluorescence Measurements

Photosynthetic capacity is often quantified by the Rubisco-limited photosynthetic capacity (i.e. maximum carboxylation rate, V(sub cmax)). It is a key plant functional trait that is widely used in Earth System Models for simulation of the global carbon and water cycles. Measuring V(sub cmax) is time-consuming and laborious; therefore, the spatiotemporal distribution of V(sub cmax) is still poorly understood due to limited measurements of V(sub cmax). In this study, we used a data assimilation approach to map the spatial variation of V(sub cmax) for global terrestrial ecosystems from a 11-year-long satellite-observed solar-induced chlorophyll fluorescence (SIF) record. In this SIF-derived V(sub cmax) map, the mean V(sub cmax) value for each plant function type (PFT) is found to be comparable to a widely used N-derived V(sub cmax) dataset by Kattge et al. (2009). The gradient of V(sub cmax) along PFTs is clearly revealed even without land cover information as an input. Large seasonal and spatial variations of V(sub cmax) are found within each PFT, especially for diverse crop rotation systems. The distribution of major crop belts, characterized with high V(sub cmax) values, is highlighted in this V(sub cmax) map. Legume plants are characterized with high V(sub cmax) values. This V(sub cmax) map also clearly illustrates the emerging soybean revolution in South America where V(sub cmax) is the highest among the world. The gradient of V(sub cmax) in Amazon is found to follow the transition of soil types with different soil N and P contents. This study suggests that satellite-observed SIF is powerful in deriving the important plant functional trait, i.e. V(sub cmax), for global climate change studies.

Liming He↗
NASA NTRS2020

Electrical Cable Design for Urban Air Mobility Aircraft

Urban Air Mobility (UAM) describes a new type of aviation focused on efficient flight within urban areas for moving people and goods. There are many different configurations of UAM vehicles, but they generally use an electric motor driving a propeller or ducted fan powered by batteries or a hybrid electric power generation system. Transmission cables are used to move energy from the storage or generation system to the electric motors. Though terrestrial power transmission cables are well established technology, aviation applications bring a whole host of new design challenges that are not typical considerations in terrestrial applications. Aircraft power transmission cable designs must compromise between resistance-per-length, weight-per-length, volume constraints, and other essential qualities. In this paper we use a multidisciplinary design optimization to explore the sensitivity of these qualities to a representative tiltwing turboelectric UAM aircraft concept. This is performed by coupling propulsion and thermal models for a given mission criteria. Results presented indicate that decreasing cable weight at the expense of increasing cable volume or cooling demand is effective at minimizing maximum takeoff weight (MTO). These findings indicate that subsystem designers should update their modeling approach in order to contribute to system-level optimality for highly-coupled novel aircraft. Mobility (UAM) vehicles have the potential to change urban and intra-urban transport in new and interesting ways. In a series of two papers Johnson et al.1 and Silva et al.2 presented four reference vehicle configurations that could service different niches in the UAM aviation category. Of those, this paper focuses on the Vertical Take-off and Landing (VTOL) tiltwing configuration shown in Figure 1. This configuration uses a turboelectric power system, feeding power from a turbo-generator through a system of transmission cables to four motors spinning large propellers on the wings. Previous work on electric cable subsystems leaves much yet to be explored, especially in the realm of subsystem coupling. Several aircraft optimization studies1, 3, 4 only considered aircraft electrical cable weight and ignored thermal effects. Electric and hybrid-electric aircraft studies by Mueller et al.5 and Hoelzen et al.6 selected a cable material but did not investigate alternative materials. Advanced cable materials have been examined by a number of authors: Alvarenga7 examined carbon nanotube (CNT) conductors for low-power applications. De Groh8, 9 examined CNT conductors for motor winding applications. Behabtu et al.,10 and Zhao et al.11 examined CNT conductors for a general applications. There were some studies that examined the thermal effects of cables but they did not allow the cable material to change; El-Kady12 optimized ground-cable insulation and cooling subject constraints. Vratny13 selected cable material based on vehicle power demand, and required resulting cable heat to be dissipated by the Thermal Management System (TMS). None of these previous studies allowed for the selection of the cable material based on a system level optimization goal. Instead, they focused on sub-system optimality such as minimum weight, which comes at the expense of incurring additional costs for other subsystems. Dama14 selected overhead transmission line materials using a weighting function and thermal constraints. However, that work was not coupled with any aircraft subsystems like a TMS. The traditional aircraft design approach, which relies on assembling groups of optimal subsystems, breaks down when considering novel aircraft concepts like the tiltwing vehicle. In a large part, this is because novel concepts have a much higher degree of interaction or coupling between subsystems. For example, when a cable creates heat, this heat needs to be dissipated by the TMS, which needs power supplied by the turbine, and delivering the power creates more heat. The cable, the TMS, and the turbine are all coupled. A change to one subsystem will affect all the other subsystems, much to the consternation of subsystem design experts. Multidisciplinary optimization is the design approach that can address these challenges. However, to fully take advantage of this, we must change the way we think about subsystem design. Specifically, we must move away from point design, and focus on creating solution spaces. The work presented in this paper uses the multidisciplinary optimization approach with aircraft level models to study the system-level sensitivity of cable traits: weight-per-length and resistance-per-length. Additionally, we examined the effects of vehicle imposed volume constraints on these traits. This is useful for three purposes: (1) to demonstrate a framework that can perform a coupled analysis between the aircraft thermal and propulsion systems, (2) to provide a method by which future cable designs can be evaluated against each other given a system-level design goal, (3) to provide insight into what cable properties may be promising for future research. This last element is explored given the caveat that the models contained in this analysis do not represent high-fidelity systems. Thus, while we can demonstrate coupling in between systems, the exact system-level sensitivity to a given parameter may change if a subsystem model or the assumptions governing that model change. The organization of this paper is as follows, in Sec II we outline a method to combine the VTOL vehicle design and cable information in order to produce cables sensitivity studies. Results analysis and discussion are contained in Sec III. Conclusions are presented in Sec IV.

Aretskin-Hariton, Eliot D.↗
NASA NTRS2021

NASA's Surface Biology and Geology Designated Observable: A Perspective on Surface Imaging Algorithms

The 2017–2027 National Academies’ Decadal Survey, Thriving on Our Changing Planet, recommended Surface Biology and Geology (SBG) as a “Designated Targeted Observable” (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380–2500 nm; ~30 m pixel resolution) hyperspectral (imaging spectroscopy) and multispectral midwave and thermal infrared (MWIR: 3–5 μm; TIR: 8–12 μm; ~60 m pixel resolution) measurements with sub-monthly temporal revisits over terrestrial, freshwater, and coastal marine habitats. To address the various mission design needs, an SBG Algo-rithms Working Group of multidisciplinary researchers has been formed to review and evaluate the algorithms applicable to the SBG DO across a wide range of Earth science disciplines, including terrestrial and aquatic ecology, atmospheric science, geology, and hydrology. Here, we summarize current state-of-the-practice VSWIR and TIR algorithms that use airborne or orbital spectral imaging observations to address the SBG DO priorities identified by the Decadal Survey: (i) terrestrial vegetation physiology, functional traits, and health; (ii) inland and coastal aquatic ecosystems physiology, functional traits, and health; (iii) snow and ice accumulation, melting, and albedo; (iv) active surface composition (eruptions, landslides, evolving landscapes, hazard risks); (v) effects of changing land use on surface energy, water, momentum, and carbon fluxes; and (vi) managing agriculture, natural habitats, water use/quality, and urban development. We review existing algorithms in the following categories: snow/ice, aquatic environments, geology, and terrestrial vegetation, and summarize the community-state-of-practice in each category. This effort synthesizes the findings of more than 130 scientists.

Aquatic↗
NASA NTRS2022

Canopy height and climate dryness parsimoniously explain spatial variation of unstressed stomatal conductance

The spatio-temporal variation of stomatal conductance directly regulates photosynthesis, water partitioning, and biosphere-atmosphere interactions. While many studies have focused on stomatal response to stresses, the spatial variation of unstressed stomatal conductance remains poorly determined, and is usually characterized in land surface models (LSMs) simply based on plant functional type (PFT). Here, we derived unstressed stomatal conductance at the ecosystem-scale using observations from 115 global FLUXNET sites. When aggregated by PFTs, the across-PFT pattern was highly consistent with the parameterizations of LSMs. However, PFTs alone captured only 17% of the variation in unstressed stomatal conductance across sites. Within the same PFT, unstressed stomatal conductance was negatively related to climate dryness and canopy height, which explained 45% of the total spatial variation. Our results highlight the importance of plant environment interactions in shaping stomatal traits. The trait-environment relationship established here provides an empirical approach for improved parameterizations of stomatal conductance in LSMs.

Yanlan Liu↗
NASA NTRSDate not supplied

Autonomous In-space Construction, Maintenance, and Reconfiguration Using Programmable Meta-Material

NASA ARC's Coded Structures Laboratory (CSL) is developing autonomous construction, maintenance, and reconfiguration technologies to meet long-duration and deep space infrastructure needs, in accordance with long-term NASA goals of "in-space reliance" and "mass-less exploration." We seek to achieve these capabilities by utilizing a "programmable meta-material" approach that integrates emerging advances in materials (mechanical meta-materials), manufacturing (cooperative mobile robotics), and autonomy (multi-agent planning algorithms). Through the ARMADAS project, we have shown assembly of high-performance engineered cellular materials using multiple cooperating mobile robotic assemblers. In this paper, we describe how such a programmable meta-material architecture may shift the paradigm of how we design, build, manufacture, and operate future space infrastructure and assets. The core of a programmable meta-material architecture consists of 3 main technology sub-areas: the structure, the assembly agents, and the assembly algorithms. We co-design these systems to ensure an adaptable system that can create and reconfigure structures from a base set of building block components. From this core technology, we can branch out and expand the capability of the system through additional secondary component types and robotic agents to perform activities such as inspections, maintenance, repair, payload installation, or perform power and communications interconnect. As these technologies mature, future designers will be able to utilize the system to rapidly integrate and operate assets in space or on planetary surfaces from a set of well-tested part library, or create their own modules to integrate into the system. A core trait to the development of this system is the automation approach. Because of the modular and functional discrete (pixel-like) nature of the structural system, a diverse set of powerful algorithms for analysis, planning, and simulation can be adapted and leveraged to optimize construction, maintenance, and dynamic reorganization (as hardware with programmable form and function). With an ability to free the design space from launch vehicle constraints and fundamentally shift how a mission is designed and conducted, we discuss the influence of a programmable meta-material architecture on mission design, build, and operations. For the "design phase", we discuss project lifecycle effects, costs, time, and performance. For the "build phase", we discuss reusability, ISRU, manufacturing, material logistics, and scalability. And for "operations", we discuss autonomy, maintenance and upgrades, reliability, and reconfiguration. Autonomy and modularity are the primary enabling traits of this system. Engineering systems that utilize a modular and reconfiguration building block approach such as digital communication and computation systems, currently lead all other areas of technology in size and complexity scalability. NASA is extending the benefits and flexibility of digital systems to hardware systems, to optimize materials lifecycle management and expand our space exploration mission capabilities.

in space assembly↗
NASA NTRSDate not supplied

Quantitative Phenotypic Analysis of Arabidopsis Thaliana Grown in Microgravity Using Soap, an Applied Artificial Intelligence

Phenotypic analysis is an essential step in studying the gravitropic responses and gravitational stress experienced by plants grown in microgravity. Many of the phenotypic traits analyzed in gravitropism studies, such as root length, leaf area, secondary root count, and number of root hairs, currently rely upon manual measurement methods for quantification. However, new advances in data analysis technology using artificial intelligence offer an opportunity for more efficient phenotypic analysis and a reduction of time spent in the data collection phase. In this project, the ability of a new artificially intelligent data collection software, SOAP (Simple Object Access Protocol), to collect and quantify phenotypic traits of Arabidopsis thaliana will be assessed. This project will test the measurements taken by an initial draft of the software. SOAP will take measurements of shoot length, a key phenotype used to assess A. thaliana stress response when grown in microgravity conditions. Shoot length measurements made by SOAP will be compared against a series of manual shoot length measurements. The comparison between the two methods of data measurement will provide valuable insight into the relative accuracy of SOAP and the margin of human error when conducting lab measurements.

Arabidopsis↗
NASA NTRS2022

Effects of Amazonian Flying Rivers on Frog Biodiversity and Populations in the Atlantic Rainforest

Given the speed at which humans are changing the climate, species with high degrees of endemism may not have time to avoid extinction through adaptation. We investigated through teleconnection analysis the origin of rainfall that determines the phylogenetic diversity of rainforest frogs and the effects of microclimate differences in shaping the morphological traits of isolated populations (which contribute to greater phylogenetic diversity and speciation). We also investigated through teleconnection analysis how deforestation in Amazonia can affect ecosystem services that are fundamental to maintaining the climate of the Atlantic rainforest biodiversity hotspot. Seasonal winds known as flying rivers carry water vapor from Amazonia to the Atlantic Forest, and the breaking of this ecosystem service could lead Atlantic Forest species to population decline and extinction in the short term. Our results suggest that the selection of morphological traits that shape Atlantic Forest frog diversity and their population dynamics are influenced by the Amazonian flying rivers. Our results also suggest that the increases of temperature anomalies in the Atlantic Ocean due to global warming and in the Amazon forest due to deforestation are already breaking this cycle and threaten the biodiversity of the Atlantic Forest hotspot.

anurans↗
NASA NTRS2024

Global Nitrogen Needs to Improve Wheat Yield Under Climate Change

Increasing global food demand will require more food production without further exceeding the planetary boundaries, while at the same time adapting to climate change. We used an ensemble of wheat simulation models, with improved yield traits from the highest-yielding wheat genotypes to quantify potential yield gains and associated N requirements. This was explored for current and climate change scenarios across representative sites of major world wheat producing regions. The improved yield traits increased yield by 16% with current N fertilizer applications under both current climate and mid-century climate change scenarios. To achieve the full yield potential, a 52% increase in global average yield under a mid-century high warming climate scenario (RCP8.5), fertilizer use would need to increase fourfold over current use, which would unavoidably lead to higher environmental impacts from wheat production. Our results show the need to improve soil N availability and N use efficiency, along with yield potential.

Nitrogen↗
NASA NTRSDate not supplied

Developing a Genetic Variant Calling Pipeline for Quantifying the Complex Mutagenic Load Accumulated in BioNutrients-1 Production Pack Samples

Microorganisms hold great promise for on demand production of labile nutrients and pharmaceuticals as well recycling and in situ resource utilization. The utilization of microorganisms for such tasks on space missions is hindered by the limited data on how microbes respond to spaceflight. For example, the genetic stability of microorganisms, and the genomic engineered traits added to deliver desired functions, over long-term storage in the spacecraft environment is poorly understood. The BioNutrients-1 (BN-1) mission conducted a 5-year study of desiccated storage in Low Earth Orbit (LEO) to evaluate the suitability of eight synthetic biology chassis organisms for long-duration space missions. We are employing high-depth, whole genome sequencing (WGS) to determine the mutagenic load that accumulated during long-term storage. Mutation analysis pipelines are well established for homogenous culture grown from a single colony, but the mutational landscape of the BN-1 samples present a unique analysis challenge, as every cell in the BN-1 samples had a unique genetic journey of DNA damage and repair. Consequently, sequence variants are expected at low allele frequency within samples. To address this genetic complexity, we apply two distinct computational approaches to identify mutations in pre-existing WGS data collected from populations of Chlamydomonas reinhardtii that were exposed to UV mutagenesis and growth in LEO. For reference genome free mutation detection, we utilized DiscoSNP++, which is a de Bruijn graph approach. For reference genome-based mutation detection we utilize GATK for Microbes, which is a Bayesian probabilistic approach. We will benchmark these approaches against the mutations originally identified using CRISP, a method optimized for pooled samples. Ultimately, quantifying the mutation load imposed by storage or growth on the ISS will help identify chassis organisms with both high levels of genome stability and viability, which are desirable traits for implementation of bioproduction in long-duration missions.

SNP↗
DOE OSTI2022

NECTURUS MACULOSUS (Common Mudpuppy). NESTING

Common Mudpuppies (Necturus maculosus maculosus) are the most widespread and wellstudied of the Proteidae, ranging from northern Georgia into eastern Canada and west to the Great Plains. Despite this extensive range, most of our knowledge of life history traits for mudpuppies is based on studies occurring in the northern half of its range, specifically the Great Lakes region. Little is known regarding life history traits in the southern portion of its range. In Tennessee, N. maculosus is thought to occur statewide in permanent streams, rivers, and likely in reservoirs and lakes. Literature suggests that parturition and nest-guarding in N. maculosus maculosus occurs in late winter through spring, but there are no published observations to verify this in Tennessee (Pasachnik and Niemiller 2011. In Niemiller and Reynolds [eds.], The Amphibians of Tennessee, pp. 231-233. University of Tennessee Press, Knoxville, Tennessee). Here, we report four observations of N. maculosus maculosus nests that were discovered while conducting snorkel surveys and lifting cover objects opportunistically for aquatic salamanders from 2011 to 2017, and approximate timing of laying in three river tributaries to the Tennessee River.

Nelson, Stephen K.↗