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At least 739 records · Page 41

Biodefense Knowledge Management System

After the Amerithrax attacks, the Department of Homeland Security (DHS) recognized the need to link technical scientific information with law enforcement and national security information in the fight against bioterrorism. The Biodefense Knowledge Center (BKC) was formed to provide timely analysis of technical biodefense-related topics to support DHS and its customers in the interagency. The Biodefense Knowledge Management System (BKMS) was created as the backbone for information management within the BKC. It is a scalable, web-based knowledge management system for organizing disparate data sources. By combining information from 35+ data sources, the BKMS provides a searchable repository for technical information including scientific reports, journal articles, news articles, research funding databases, patent databases, and genomic datasets. The current system contains over 58 million documents and 450 million genomic records, and operates at several classification levels.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Developing and Evaluating Metrics for Demand Flexibility in Buildings: Comparing Simulations and Field Data

Building demand flexibility (DF) has attracted significant attention in recent years among researchers, technology developers and control companies, aggregators, utilities, and many others. There are numerous challenges with today’s electricity systems such as managing peak demand capacity and integrating variable renewables into the grid. Flexible building loads can provide various grid services to help reduce electricity costs, smooth out renewables intermittency and balance supply and demand. Recognizing this, the US DOE is leading the Grid-interactive Efficient Buildings (GEB) initiative which includes research to evaluate the potential, availability and timing of flexible loads. In this paper we present load shed metrics for three building types – medium office, large office and retail store – and compare prototype simulation results with measured data from 12 actual buildings that participated in hot summertime utility demand response (DR) events. The DR strategies included varying zone temperature and reducing light levels. The magnitude of a key DF metric, “demand decrease intensity” (or “shed intensity”) (W/ft2), between the simulation results and field data are similar (14-32% differences) for both mean and median values, though the field data show much larger variation among DR events. The coefficient p-values from linear regression model tests showed that outside air temperature is a significant variable for the whole building shed intensity when the resetting zone temperature strategy is deployed. These findings support the concept of using prototype building simulation to estimate building DF and expanding future simulation research to additional building types and climate zones.

Liu, Jingjing↗

Automated cataloging and characterization of space-derived data

One of the most significant technical issues that NASA must address and resolve is the problem of managing the enormous amounts of scientific and engineering data that will be generated by the next generation of remote sensing systems such as the Hubble Space Telescope (HST) and the Earth Observing System (EOS). The amount of data these sensors are expected to produce will be orders of magnitude greater than NASA has ever experienced. Consequently new solutions must be developed for managing, accessing, and automatically inputting the data into a database in some expressive fashion that will provide a meaningful understanding and effective utilization of this data in a multidisciplinary environment. Presently, scientific data provided by satellites and other sources are processed, cataloged, and archived according to narrow mission or project-specific requirements with little regard to the semantics of the overall research. Scientists therefore lack knowledge of or access to potentially valuable data outside their own field. What is needed is an innovative approach that will allow collected data to be automatically cataloged, characterized, and managed in a domain-community. A concept and design approach that employs expert system-based knowledge controllers combined with advanced spatial database systems and graphical data structures is discussed.

Campbell, William J.↗

Automated cataloging and characterization of space-derived data

One of the most significant technical issues that NASA must address and resolve is the problem of managing the enormous amounts of scientific and engineering data that will be generated by the next generation of remote sensing systems such as the Hubble Space Telescope (HST) and the Earth Observing System (EOS). The amount of data these sensors are expected to produce will be orders of magnitude greater than NASA has ever experienced. Consequently, new solutions must be developed for managing, accessing, and automatically inputting the data into a database in some expressive fashion that will provide a meaningful understanding and effective utilization of this data in a multidisciplinary environment. Presently, scientific data provided by satellites and other sources are processed, cataloged, and archived according to narrow mission or project-specific requirements with little regard to the semantics of the overall research. Scientists therefore lack knowledge of or access to potentially valuable data outside their own field. What is needed is an innovative approach that will allow collected data to be automatically cataloged, characterized, and managed in a domain-community. A concept and design approach that employs expert system-based knowledge controllers combined with advanced spatial database systems and graphical data structures is discussed.

Campbell, William J.↗

Boundary spanning increases knowledge and action on invasive species in a changing climate

Abstract Challenges associated with global change stressors on ecosystems have prompted calls to improve actionable science, including through boundary‐spanning activities, which aim to build connections and communication between researchers and natural resource practitioners. By synthesizing and translating research and practitioner knowledge, boundary‐spanning activities could support proactive, research‐informed conservation practice, but the success of these efforts is rarely evaluated. Using repeat survey data from the Northeast Regional Invasive Species and Climate Change (NE RISCC) Management Network, a boundary‐spanning organization, we evaluate whether participating in NE RISCC affected practitioners' knowledge, actions and priorities related to invasive species management under a changing climate. Our survey results suggest that practitioners who participate in NE RISCC have greater knowledge about invasive species and climate change and are incorporating climate change in more ways into their invasive species management. We also found NE RISCC membership affected the perceived usefulness of informational resources, with NE RISCC members more frequently identifying research syntheses and targeted workshops (both are common products used by NE RISCC to translate science into practice and share manager knowledge) as useful compared to non‐members. Practitioners who participate in NE RISCC also identified somewhat different research priorities, with non‐members and short‐term members more frequently identifying range‐shifting neonative species and their impacts on native communities as higher priorities compared to long‐term NE RISCC members. NE RISCC research activities and outreach materials have consistently framed range‐shifting neonative species as comparatively low risk, suggesting that this information has influenced practitioner's perception of risk. Practical implication : Although real‐world impacts of applied ecology are notoriously difficult to quantify, this analysis illustrates that if research results are actively translated, they can affect the knowledge and actions of natural resource practitioners. These impacts illustrate the potential for boundary‐spanning efforts to address other global change challenges to conservation.

Evans, Annette E.↗

Developing an Automated Microscopic Traffic Simulation Scenario Generation Tool

Traffic simulation is an effective tool for urban planners, traffic engineers, and researchers to study traffic. In particular, microscopic traffic simulation, which simulates individual vehicles’ movements within a transportation network, has demonstrated its importance in analyzing and managing transportation systems. However, integrating data from various sources, generating traffic scenarios, and importing information into traffic simulators to conduct microscopic simulations have always been a challenge. This paper presents a solution to overcome this challenge: RealTwin, a comprehensive tool for automated scenario generation for microscopic traffic simulation. Following a streamlined scenario generation and calibration workflow, RealTwin effectively bridges gaps between traffic data from various sources and traffic simulators, making microscopic traffic simulation more accessible for researchers and engineers across various levels of expertise. Using RealTwin to generate a real-world traffic scenario in Simulation of Urban Mobility (SUMO), VISSIM, and AIMSUN, RealTwin’s ability is demonstrated in the construction of realistic and consistent traffic scenarios in different simulators. Furthermore, this paper introduces and illustrates RealTwin’s capability for technology (e.g., autonomous vehicle) scenario generation. This feature can contribute to more comprehensive microscopic simulations, facilitating the analysis of potential effects of various technological innovations on mobility, energy efficiency, and safety. Finally, RealTwin is used to calibrate a simulation in SUMO. In conclusion, the calibration module enhances RealTwin’s ability to generate consistent simulations across different platforms and more realistic simulations that reflect real-world traffic operations.

autonomous vehicle↗

Kraken2 Metagenomic Virus Database

The Database: Kraken2 [1] database built from a classification tree containing over 700k metagenomic viruses from JGI IMG/VR [2]. (1) Wood, D. E., Lu, J., and Langmead, B. (2019). Improved metagenomic analysis with Kraken 2. Genome Biol., 20(1), 1–13. doi: 10.1186/s13059-019-1891-0 (2) Paez-Espino D, Chen I-MA, Palaniappan K, Ratner A, Chu K, Szeto E, et al. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 2017;45:D457-65. For Paper: Title: A k-mer based approach for virus classification in metatranscriptomic and metagenomic samples identifies viral associations in the Populus phytobiome and autism brains Abstract Background Viruses are an underrepresented taxa in the study and identification of microbiome constituents; however, they play an important role in health, microbiome regulation, and transfer of genetic material. Only a few thousand viruses have been isolated, sequenced, and assigned a taxonomy, which further limits the ability to identify and quantify viruses in the microbiome. Additionally, the vast diversity of viruses represents a challenge for classification, not only in constructing a viral taxonomy, but also in identifying similarities between a virus' genotype and its phenotype. However, the diversity of viral sequences can be leveraged to classify their sequences in metagenomic and metatranscriptomic samples. Methods To identify viruses in transcriptomic and genomic samples, we developed a dynamic programming algorithm for creating a classification tree out of 715,672 metagenome viruses. To create the classification tree, we clustered proportional similarity scores generated from the k-mer profiles of each of the metagenome viruses. We then integrated the viral classification tree with the NCBI taxonomy for use with ParaKraken, a metagenomic/transcriptomic classifier. Results To illustrate the breadth of our utility for classifying viruses with ParaKraken, we analyzed data from a plant metagenome study identifying the differences between two Populus genotypes in three different compartments and on a human metatranscriptome study identifying the differences between Autism Spectrum Disorder patients and controls in post mortem brain biopsies. In the Populus study, we identified genotype and compartment specific viral signatures, while in the Autism study we identified a significant increased abundance of eight viral sequences in Autism brain biopsies. Conclusion Viruses represent an important aspect of the microbiome. The ability to classify viruses represents the first step in being able to better understand their role in the microbiome. The viral classification method presented here allows for more complete identification of viral sequences for use in identifying associations between viruses and the host and viruses and other microbiome members. Acknowledgements and Funding This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725. This research was also supported by the Plant-Microbe Interfaces Scientific Focus Area in the Genomic Science Program, the Office of Biological and Environmental Research (BER) in the U.S. Department of Energy Office of Science, and by the Department of Energy, Laboratory Directed Research and Development funding (ProjectID 8321), at the Oak Ridge National Laboratory. Oak Ridge National Laboratory is managed by UT-Battelle, LLC, for the US DOE under contract DE-AC05-00OR22725. This research used resources of the Compute and Data Environment for Science (CADES).

59 BASIC BIOLOGICAL SCIENCES↗

Studies and analyses of the management of scientific research and development, including implementation and application at NASA centers

Summary results obtained through the Program of Research on the Management of Research and Development (POMRAD) were presented. The nature of the overall program and the specific projects undertaken were described. Statistical data is also given concerning the papers, publications, people, and major program areas associated with the program. The actual list of papers, names of doctoral and masters theses, and other details of the program are included as appendices.

Rubenstein, A. H.↗

In-space research, technology and engineering experiments and Space Station

The NASA Space Station will serve as a technology research laboratory, a payload-servicing facility, and a large structure fabrication and assembly facility. Space structures research will encompass advanced structural concepts and their dynamics, advanced control concepts, sensors, and actuators. Experiments dealing with fluid management will gather data on such fundamentals as multiphase flow phenomena. As requirements for power systems and thermal management grow, experiments quantifying the performance of energy systems and thermal management concepts will be undertaken, together with expanded efforts in the fields of information systems, automation, and robotics.

Tyson, Richard↗

A visiting scientist program for the burst and transient source experiment

During this project, Universities Space Research Association provided program management and the administration for overseeing the performance of the total contractual effort. The program director and administrative staff provided the expertise and experience needed to efficiently manage the program.USRA provided a program coordinator and v visiting scientists to perform scientific research with Burst and Transient Source Experiment (BATSE) data. This research was associated with the primary scientific objectives of BATSE and with the various BATSE collaborations which were formed in response to the Compton Gamma Ray Observatory Guest Investigator Program. USRA provided administration for workshops, colloquia, the preparation of scientific documentation, etc. and also provided flexible program support in order to meet the on-going needs of MSFC's BATSE program. USRA performed tasks associated with the recovery, archiving, and processing of scientific data from BATSE. A bibliography of research in the astrophysics discipline is attached as Appendix 1. Visiting Scientists and Research Associates performed activities on this project, and their technical reports are attached as Appendix 2.

Kerr, Frank J.↗

Integrating International Space Station payload operations

The payload operations support for the International Space Station (ISS) payload is reported on, describing payload activity planning, payload operations control, payload data management and overall operations integration. The operations concept employed is based on the distribution of the payload operations responsibility between the researchers and ISS partners. The long duration nature of the ISS mission dictates the geographical distribution of the payload operations activities between the different national centers. The coordination and integration of these operations will be assured by NASA's Payload Operations Integration Center (POIC). The prime objective of the POIC is the achievement of unified operations through communication and collaboration.

Noneman, Steven R.↗

Comparison of Satellite Observations of Aerosol Optical Depth to Surface Monitor Fine Particle Concentration

Under NASA's Earth Science Applications Program, the Infusing satellite Data into Environmental Applications (IDEA) project examined the relationship between satellite observations and surface monitors of air pollutants to facilitate a more capable and integrated observing network. This report provides a comparison of satellite aerosol optical depth to surface monitor fine particle concentration observations for the month of September 2003 at more than 300 individual locations in the continental US. During September 2003, IDEA provided prototype, near real-time data-fusion products to the Environmental Protection Agency (EPA) directed toward improving the accuracy of EPA s next-day Air Quality Index (AQI) forecasts. Researchers from NASA Langley Research Center and EPA used data from the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument combined with EPA ground network data to create a NASA-data-enhanced Forecast Tool. Air quality forecasters used this tool to prepare their forecasts of particle pollution, or particulate matter less than 2.5 microns in diameter (PM2.5), for the next-day AQI. The archived data provide a rich resource for further studies and analysis. The IDEA project uses data sets and models developed for tropospheric chemistry research to assist federal, state, and local agencies in making decisions concerning air quality management to protect public health.

Kleb, Mary M.↗

Examples L-Band Interference will be Presented and Discussed, as well as the Importance of L-Band Soil Moisture Observations

Examples of L-band interference will be presented and discussed, as well as the importance of L-band soil moisture observations, as part of this one-day GEOSS workshop XXXVII on "Data Quality and Radio Spectrum Allocation Impact on Earth Observations" will address the broad challenges of data quality and the impact of generating reliable information for decision makers who are Earth data users but not necessarily experts in the Earth observation field. GEO has initiated a data quality assessment task (DA-09-01a) and workshop users will review and debate the directions and challenges of this effort. Radio spectrum allocation is an element of data availability and data quality, and is also associated with a GEO task (AR-06-11). A recent U.S. National Research Council report on spectrum management will be addressed as part of the workshop. Key representatives from industry, academia, and government will provide invited talks on these and related issues that impact GEOSS implementation.

Kim, Edward↗

Managing Large Datasets for Atmospheric Research

Since the mid-1980s, airborne and ground measurements have been widely used to provide comprehensive characterization of atmospheric composition and processes. Field campaigns have generated a wealth of insitu data and have grown considerably over the years in terms of both the number of measured parameters and the data volume. This can largely be attributed to the rapid advances in instrument development and computing power. The users of field data may face a number of challenges spanning data access, understanding, and proper use in scientific analysis. This tutorial is designed to provide an introduction to using data sets, with a focus on airborne measurements, for atmospheric research. The first part of the tutorial provides an overview of airborne measurements and data discovery. This will be followed by a discussion on the understanding of airborne data files. An actual data file will be used to illustrate how data are reported, including the use of data flags to indicate missing data and limits of detection. Retrieving information from the file header will be discussed, which is essential to properly interpreting the data. Field measurements are typically reported as a function of sampling time, but different instruments often have different sampling intervals. To create a combined data set, the data merge process (interpolation of all data to a common time base) will be discussed in terms of the algorithm, data merge products available from airborne studies, and their application in research. Statistical treatment of missing data and data flagged for limit of detection will also be covered in this section. These basic data processing techniques are applicable to both airborne and ground-based observational data sets. Finally, the recently developed Toolsets for Airborne Data (TAD) will be introduced. TAD (tad.larc.nasa.gov) is an airborne data portal offering tools to create user defined merged data products with the capability to provide descriptive statistics and the option to treat measurement uncertainty.

Chen, Gao↗

Gaps in global wildlife trade monitoring leave amphibians vulnerable

As the biodiversity crisis continues, we must redouble efforts to understand and curb pressures pushing species closer to extinction. One major driver is the unsustainable trade of wildlife. Trade in internationally regulated species gains the most research attention, but this only accounts for a minority of traded species and we risk failing to appreciate the scale and impacts of unregulated legal trade. Despite being legal, trade puts pressure on wild species via direct collection, introduced pathogens, and invasive species. Smaller species-rich vertebrates, such as reptiles, fish, and amphibians, may be particularly vulnerable to trading because of gaps in regulations, small distributions, and demand of novel species. Here, we combine data from five sources: online web searches in six languages, Convention on International Trade in Endangered Species (CITES) trade database, Law Enforcement Management Information System (LEMIS) trade inventory, IUCN assessments, and a recent literature review, to characterise the global trade in amphibians, and also map use by purpose including meat, pets, medicinal, and for research. We show that 1215 species are being traded (17% of amphibian species), almost three times previous recorded numbers, 345 are threatened, and 100 Data Deficient or unassessed. Traded species origin hotspots include South America, China, and Central Africa; sources indicate 42% of amphibians are taken from the wild. Newly described species can be rapidly traded (mean time lag of 6.5 years), including threatened and unassessed species. The scale and limited regulation of the amphibian trade, paired with the triptych of connected pressures (collection, pathogens, invasive species), warrants a re-examination of the wildlife trade status quo, application of the precautionary principle in regard to wildlife trade, and a renewed push to achieve global biodiversity goals.

Hughes, Alice C.↗

Data for: A Synoptic System for Capturing Ecosystem Control Points Across Terrestrial-Aquatic Interfaces

The investigation of how climate change and water level fluctuations impact variable and interconnected ecosystems, like the interfaces between terrestrial and aquatic environments, requires the collection and integration of many data types. We describe an integrative and autonomous environmental monitoring approach that uses environmental sensors and data loggers to monitor surface water, groundwater, soil, and vegetation changes and generate essential data for predictive models. We established the network at seven sites along the Chesapeake Bay and Lake Erie coastlines, including a large-scale flood manipulation experiment, collectively generating over three million observations per month. Such sensor networks hold great promise for tracking and comprehending environmental changes where land and water intersect. The sensor system and overall approach to sensor management that we have designed is intended to be widely accessible for research teams spanning in size from an individual investigator to large multi-institution projects. This dataset shows example data generated by the sensor network described above. Data output for data loggers connected to groundwater water quality sondes measuring dissolved oxygen, pH, oxidative redox potential (ORP), groundwater elevation, groundwater salinity and temperature, and groundwater elevation; replicate soil moisture and conductivity probes installed at 10 and 30 cm below the ground surface; rainfall and solar radiation; and mean sap flow from 8 replicate probes. Sensors are installed at upland forest (UP), wetlands (W), and transitional locations between these ecosystems (TR). Example datasets are from Goodwin Islands in the Chesapeake Bay and Portage River along the Lake Erie coastline.

54 ENVIRONMENTAL SCIENCES↗

The economic impact of remote sensing data as the source of nonpoint pollution monitoring and control

Nonpoint pollution of streams with sediment as a result of runoff from alternative uses of land has become a socially unacceptable product of economic activity. This report describes a research approach to economically achieve correction of the nonpoint pollution problem. The research approach integrates the economic model with those data which may be obtainable from remotely sensed sources. The economic problem involves measurement of the direct benefits and costs associated with the changes in land management activities necessary to reduce the level of nonpoint pollution. Remotely sensed data from ERTS-1 may provide some of the information required for the economic model which indicates efficient solutions to the nonpoint pollution problem. Three classes of data (i.e., soil categories, vegetative cover, and water turbidity) have the potential to be measured by ERTS-1 systems. There is substantial research which indicates the ability of ERTS-1 to measure these classes of data under selected conditions.

Miller, W. L.↗

Meeting the Challenges of Exploration Systems: Health Management Technologies for Aerospace Systems With Emphasis on Propulsion

The constraints of future Exploration Missions will require unique Integrated System Health Management (ISHM) capabilities throughout the mission. An ambitious launch schedule, human-rating requirements, long quiescent periods, limited human access for repair or replacement, and long communication delays all require an ISHM system that can span distinct yet interdependent vehicle subsystems, anticipate failure states, provide autonomous remediation, and support the Exploration Mission from beginning to end. NASA Glenn Research Center has developed and applied health management system technologies to aerospace propulsion systems for almost two decades. Lessons learned from past activities help define the approach to proper ISHM development: sensor selection- identifies sensor sets required for accurate health assessment; data qualification and validation-ensures the integrity of measurement data from sensor to data system; fault detection and isolation-uses measurements in a component/subsystem context to detect faults and identify their point of origin; information fusion and diagnostic decision criteria-aligns data from similar and disparate sources in time and use that data to perform higher-level system diagnosis; and verification and validation-uses data, real or simulated, to provide variable exposure to the diagnostic system for faults that may only manifest themselves in actual implementation, as well as faults that are detectable via hardware testing. This presentation describes a framework for developing health management systems and highlights the health management research activities performed by the Controls and Dynamics Branch at the NASA Glenn Research Center. It illustrates how those activities contribute to the development of solutions for Integrated System Health Management.

Melcher, Kevin J.↗