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At least 739 records · Page 41

Modern Monte Carlo methods for efficient uncertainty quantification and propagation: A survey

Uncertainty quantification (UQ) includes the characterization, integration, and propagation of uncertainties that result from stochastic variations and a lack of knowledge or data in the natural world. Monte Carlo (MC) method is a sampling-based approach that has widely used for quantification and propagation of uncertainties. However, the standard MC method is often time-consuming if the simulation-based model is computationally intensive. This article gives an overview of modern MC methods to address the existing challenges of the standard MC in the context of UQ. Specifically, multilevel Monte Carlo (MLMC) extending the concept of control variates achieves a significant reduction of the computational cost by performing most evaluations with low accuracy and corresponding low cost, and relatively few evaluations at high accuracy and corresponding high cost. Multifidelity Monte Carlo (MFMC) accelerates the convergence of standard Monte Carlo by generalizing the control variates with different models having varying fidelities and varying computational costs. Multimodel Monte Carlo method (MMMC), having a different setting of MLMC and MFMC, aims to address the issue of UQ and propagation when data for characterizing probability distributions are limited. Multimodel inference combined with importance sampling is proposed for quantifying and efficiently propagating the uncertainties resulting from small data sets. All of these three modern MC methods achieve a significant improvement of computational efficiency for probabilistic UQ, particularly uncertainty propagation. Finally, an algorithm summary and the corresponding code implementation are provided for each of the modern MC methods. The extension and application of these methods are discussed in detail.

97 MATHEMATICS AND COMPUTING↗

Chapter 12: Gene Editing Technologies for Biofuel Production in Thermophilic Microbes

Thermophilic microbes are an attractive bioproduction platform due to their inherently lower contamination risk and their ability to perform thermostable enzymatic processes which may be required for biomass processing and other industrial applications. The engineering of microbes for industrial scale processes requires a suite of genetic engineering tools to optimize existing biological systems as well as to design and incorporate new metabolic pathways within strains. Yet, such tools are often lacking and/or inadequate for novel microbes, especially thermophiles. This chapter focuses on genetic tool development and engineering strategies, in addition to challenges, for thermophilic microbes. We provide detailed instructions and techniques for tool development for an anaerobic thermophile, Caldanaerobacter subterraneus subsp. tengcongensis, including culturing, plasmid construction, transformation, and selection. This establishes a foundation for advanced genetic tool development necessary for the metabolic engineering of this microbe and potentially other thermophilic organisms.

BASIC BIOLOGICAL SCIENCES,BIOMASS FUELS↗

Chapter 6: An Improved Leaf Protoplast System for Highly Efficient Transient Expression in Switchgrass (Panicum virgatum L.)

As a robust perennial C4-type monocot plant and a native species to North America, switchgrass (Panicum virgatum) has been evaluated and designated as a strong candidate bioenergy crop by the U.S. DOE. Although genetic modifications of switchgrass have been used to successfully reduce the recalcitrance of switchgrass biomass for biofuel production, the generation of transgenic switchgrass is still a slow and laborious process. A transient protoplast system can provide an excellent platform to accelerate the selection of genes-of-interest for tailoring switchgrass biomass. However, partially due to the lack of the complete genomic information, the attempts to optimize the transient protoplast system for switchgrass remain scarce. In this chapter, we provide an improved protocol for switchgrass protoplast isolation, increased transformation efficiency using CsCl gradient ultracentrifugation-derived plasmid DNA and extended application of the transient switchgrass protoplast system to analyze protein expression using western blot.

BASIC BIOLOGICAL SCIENCES,BIOMASS FUELS↗

CRISPR-Cas Genome Editing in the Cellulolytic Bacterium Clostridium thermocellum (C. thermocellum)

Clostridium thermocellum is an anaerobic thermophile that can efficiently degrade lignocellulosic biomass and directly convert it into value-added products such as ethanol. The cellulolytic and ethanologenic capabilities of C. thermocellum make it an excellent candidate for consolidated bioprocessing (CBP) for industrial production, where biomass degradation and fermentation occur simultaneously. In this organism, strain development for effective CBP has traditionally been hindered by the lack of genetic tools. Here, we detail our efficient two-step CRISPR-Cas genome editing protocol for C. thermocellum, using both the native Type I-B CRISPR-Cas system and an exogenous Type-II CRISPR system from Geobacillus stearothermophilus. As recombination is limiting in C. thermocellum genome engineering, we highlight effective thermophilic recombinases necessary to improve genome editing in these systems. We additionally provide design rules for the repair template and synthetic guide RNA (gRNA) for each system. Using these newly developed CRISPR and recombineering tools, targeted C. thermocellum engineering will substantiate efforts toward CBP strain development in industrial applications.

anaerobe↗

High-Resolution Momentum Imaging—From Stern’s Molecular Beam Method to the COLTRIMS Reaction Microscope [Book Chapter]

Multi-particle momentum imaging experiments are now capable of providing detailed information on the properties and the dynamics of quantum systems in Atomic, Molecular and Photon (AMO) physics. Historically, Otto Stern can be considered the pioneer of high-resolution momentum measurements of particles moving in a vacuum and he was the first to obtain sub-atomic unit (a.u.) momentum resolution (Schmidt-Böcking et al. in The precision limits in a single-event quantum measurement of electron momentum and position, these proceedings). A major contribution to modern experimental atomic and molecular physics was his so-called molecular beam method, which Stern developed and employed in his experiments. With this method he discovered several fundamental properties of atoms, molecules and nuclei. As corresponding particle detection techniques were lacking during his time, he was only able to observe the averaged footprints of large particle ensembles. Today it is routinely possible to measure the momenta of single particles, because of the tremendous progress in single particle detection and data acquisition electronics. A “state-of-the-art” COLTRIMS reaction microscope can measure, for example, the momenta of several particles ejected in the same quantum process in coincidence with sub-a.u. momentum resolution. Such setups can be used to visualize the dynamics of quantum reactions and image the entangled motion of electrons inside atoms and molecules. This review will briefly summarize Stern’s work and then present in longer detail the historic steps of the development of the COLTRIMS reaction microscope. Furthermore, some benchmark results are shown which initially paved the way for a broad acceptance of the COLTRIMS approach. Finally, a small selection of milestone work is presented which has been performed during the last two decades.

Jahnke, T.↗

A Topological Approach for Motion Track Discrimination

Detecting small targets at range is difficult because there is not enough spatial information present in an image sub-region containing the target to use correlation-based methods to differentiate it from dynamic confusers present in the scene. Moreover, this lack of spatial information also disqualifies the use of most state-of-the-art deep learning image-based classifiers. Here, we use characteristics of target tracks extracted from video sequences as data from which to derive distinguishing topological features that help robustly differentiate targets of interest from confusers. In particular, we calculate persistent homology from time-delayed embeddings of dynamic statistics calculated from motion tracks extracted from a wide field-of-view video stream. In short, we use topological methods to extract features related to target motion dynamics that are useful for classification and disambiguation and show that small targets can be detected at range with high probability.

Emerson, Tegan H.↗

Computational Design of a Simple Flyer Plate Launcher

The response of materials to shock loading is important to understand for a variety of applications. When shock physics emerged during and after WWII, direct explosive loading or explosively driven plate impact was the primary tool for these studies. Subsequent decades have seen the widespread use of large caliber guns for plate impact studies, laser-shock facilities and pulsed power facilities. INL currently lacks a gun suitable for plate impact or explosives casting and machining facilities; however, it does possess explosives use and handling capabilities. An option for performing plate impact experiments was needed, therefore continuum scale models were utilized to explore a few simple donor-acceptor explosive plane wave lens designs, one of which could be hand packed with plastic explosives to launch flyer plates. 2D simulations were performed to study different geometries in an effort to minimize the difference in shock arrival across the central portion of a small copper flyer plate. A shock wave arrival time difference under 50 ns across 50 percent of the center of the flyer was achieved with a few designs. This work summarizes the computational models and results.

36 MATERIALS SCIENCE↗

Role of Selenium in CdZnTeSe as a Defect Engineering Agent

Cadmium zinc telluride (CdZnTe) with 10 atomic % Zn has been the material of choice for room-temperature semiconductor compact X- and gamma-ray detector applications for over three decades. Despite its commercial success as the most desirable room-temperature semiconductor radiation detection material, CdZnTe (CZT) suffers from a lack of compositional homogeneity on both the micro- and macroscales and the presence of high concentrations of performance-limiting defects such as subgrain boundary networks (dislocation walls) and secondary phases (Te-rich inclusions). Random distributions of these defects in the CZT matrix result in the spatial inhomogeneity of the material’s charge-transport properties. The recently discovered quaternary Cd x Zn 1-x Te 1-y Se y (CZTS) has experienced remarkable advances in its material properties, with highly reduced defects and higher compositional homogeneity. This book chapter focuses on the presence of performance-limiting defects in CZT that have thus far hindered the yield and cost of high-quality detectors and restricted their widespread deployment for a variety of potential applications, particularly for their use as large-volume gamma detectors, where the demands on material perfection are significantly greater. This chapter also provides an overview of the recent developments in the quaternary material CZTS, particularly the effects of selenium (Se) in the CZTS matrix on the defect engineering of the quaternary alloy material and the advancement of CZTS as a potential next-generation detector operable at room temperature.

Roy, Utpal N.↗

Visual Systems Mapping to Define and Compare Woody Biomass LCAs for Sustainable Systems

The challenge addressed in this research centres on the need to choose between several biomass sources and energy production processes, while supporting rural economies and resilience of forest systems. A key barrier to effective decision-making for strategies using biomass is the lack of standardized and transparent life cycle assessment (LCA) baselines. These baselines are critical for assessing the impacts of biomass strategies but often vary due to regional factors and chosen simplifying assumptions of the LCAs. However, omitting key variables can mean the LCA omits key feedback and balancing loops relevant to fully assessing impacts of the change or test scenario. To address these complexities, this project employs a systems engineering approach: visual systems mapping. This technique is used to define the boundaries and dynamic behaviours of LCA baselines, enhancing transparency. By examining five literature sources and their documented baseline scenarios, the systems mapping case-studies demonstrates an approach to documenting and archiving these baselines. Recommendations are that visual systems mapping should be used to document key assumptions, such as baselines, of LCAs. Further, where possible open data repositories should hold key information about LCA baselines and reproducible workflows (e.g., using open-source tools) should be used to improve transparency and comparability in LCAs. Given the consensus within the broader scientific community on the importance of replicable data practices, this research reinforces the need for standardized frameworks and systems engineering tools in LCAs. This research demonstrates a pathway to more transparent, standardized, and comparable LCAs, that may bolster decisions for biomass systems.

Davis, Maggie [ORNL] (ORCID:0000000181319328)↗

Horizon constraints on holographic Green’s functions

We explore a new class of general properties of thermal holographic Green’s functions that can be deduced from the near-horizon behaviour of classical perturbations in asymptotically anti-de Sitter spacetimes. We show that at negative imaginary Matsubara frequencies and appropriate complex values of the wavenumber the retarded Green’s functions of generic operators are not uniquely defined, due to the lack of a unique ingoing solution for the bulk perturbations. From a boundary perspective these ‘pole-skipping’ points correspond to locations in the complex frequency and momentum planes at which a line of poles of the retarded Green’s function intersects with a line of zeroes. As a consequence the dispersion relations of collective modes in the boundary theory at energy scales ω ~ T are directly constrained by the bulk dynamics near the black-brane horizon. For the case of conserved U(1) current and energy-momentum tensor operators we give examples where the dispersion relations of hydrodynamic modes pass through a succession of poleskipping points as real wavenumber is increased. We discuss implications of our results for transport, hydrodynamics and quantum chaos in holographic systems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Initial value problem in string-inspired nonlocal field theory

We consider a nonlocal scalar field theory inspired by the tachyon action in open string field theory. The Lorentz-covariant action is characterized by a parameter ξ 2 that quantifies the amount of nonlocality. Restricting to purely time-dependent configurations, we show that a field redefinition perturbative in ξ 2 reduces the action to a local two-derivative theory with a ξ 2 -dependent potential. This picture is supported by evidence that the redefinition maps the wildly oscillating rolling tachyon solutions of the nonlocal theory to conventional rolling in the new scalar potential. For general field configurations we exhibit an obstruction to a local Lorentz-covariant formulation, but we can still achieve a formulation local in time, as well as a light-cone formulation. These constructions provide an initial value formulation and a Hamiltonian. Their causality is consistent with a lack of superluminal behavior in the nonlocal theory.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Inconsistency of islands in theories with long-range gravity

In ordinary gravitational theories, any local bulk operator in an entanglement wedge is accompanied by a long-range gravitational dressing that extends to the asymptotic part of the wedge. Islands are the only known examples of entanglement wedges that are disconnected from the asymptotic region of spacetime. In this paper, we show that the lack of an asymptotic region in islands creates a potential puzzle that involves the gravitational Gauss law, independently of whether or not there is a non-gravitational bath. In a theory with long-range gravity, the energy of an excitation localized to the island can be detected from outside the island, in contradiction with the principle that operators in an entanglement wedge should commute with operators from its complement. In several known examples, we show that this tension is resolved because islands appear in conjunction with a massive graviton. We also derive some additional consistency conditions that must be obeyed by islands in decoupled systems. Our arguments suggest that islands might not constitute consistent entanglement wedges in standard theories of massless gravity where the Gauss law applies.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Flavor fragmentation function factorization

A definition of partonic jet flavor that is both theoretically well-defined and experimentally robust would have profound implications for measurements and predictions especially for heavy flavor applications. Recently, a definition of jet flavor was introduced as the net flavor flowing along the direction of the Winner-Take-All axis of a jet which is soft safe to all orders, but not collinear safe. Here, we exploit the lack of collinear safety and propose a factorization theorem of perturbative flavor fragmentation functions that resum collinear divergences and describe the evolution of flavor from the short distance of jet production to the long distance at which hadronization occurs. Collinear flavor evolution is governed by a small modification of the DGLAP equations. We present a detailed all-orders analysis and identify exact relations that must hold amongst the various anomalous dimensions by probability conservation and the existence of fixed points of the renormalization group flow. We explicitly validate the factorization theorem at one-loop order, and demonstrate its consistency at two loops in particular flavor channels. Starting at two-loops, constraints on phase space imposed by flavor measurements potentially allow for non-trivial soft contributions, but we demonstrate that they are scaleless and so explicitly vanish, ensuring that soft particles are summed inclusively and all divergences are exclusively collinear in nature. This factorization theorem opens the door to precision calculations with identified flavor in the infrared.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Obstacles to constructing de Sitter space in string theory

There have been many attempts to construct de Sitter space-times in string theory. While arguably there have been some successes, this has proven challenging, leading to the de Sitter swampland conjecture: quantum theories of gravity do not admit stable or metastable de Sitter space. Here we explain that, within controlled approximations, one lacks the tools to construct de Sitter space in string theory. Such approximations would require the existence of a set of (arbitrarily) small parameters, subject to severe constraints. But beyond this one also needs an understanding of big-bang and big-crunch singularities that is not currently accessible to standard approximations in string theory. The existence or non-existence of metastable de Sitter space in string theory remains a matter of conjecture.

79 ASTRONOMY AND ASTROPHYSICS↗

Discreteness and integrality in Conformal Field Theory

Various observables in compact CFTs are required to obey positivity, discreteness, and integrality. Positivity forms the crux of the conformal bootstrap, but understanding of the abstract implications of discreteness and integrality for the space of CFTs is lacking. We systematically study these constraints in two-dimensional, non-holomorphic CFTs, making use of two main mathematical results. First, we prove a theorem constraining the behavior near the cusp of integral, vector-valued modular functions. Second, we explicitly construct non-factorizable, non-holomorphic cuspidal functions satisfying discreteness and integrality, and prove the non-existence of such functions once positivity is added. Application of these results yields several bootstrap-type bounds on OPE data of both rational and irrational CFTs, including some powerful bounds for theories with conformal manifolds, as well as insights into questions of spectral determinacy. We prove that in rational CFT, the spectrum of operator twists t ≥ c/12 is uniquely determined by its complement. Likewise, we argue that in generic CFTs, the spectrum of operator dimensions Δ > c–1/12 is uniquely determined by its complement, absent fine-tuning in a sense we articulate. Finally, we discuss implications for black hole physics and the (non-)uniqueness of a possible ensemble interpretation of AdS 3 gravity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Constrained HRT Surfaces and their Entropic Interpretation

Abstract Consider two boundary subregionsAandBthat lie in a common boundary Cauchy surface, and consider also the associated HRT surfaceγ B forB. In that context, the constrained HRT surfaceγ A:B can be defined as the codimension-2 bulk surface anchored toAthat is obtained by a maximin construction restricted to Cauchy slices containingγ B . As a result,γ A:B is the union of two pieces,$$ {\gamma}_{A:B}^B $$ γ A : B B and$$ {\gamma}_{A:B}^{\overline{B}} $$ γ A : B B ¯ lying respectively in the entanglement wedges ofBand its complement$$ \overline{B} $$ B ¯ . Unlike the area$$ \mathcal{A}\left({\gamma}_A\right) $$ A γ A of the HRT surfaceγ A , at least in the semiclassical limit, the area$$ \mathcal{A}\left({\gamma}_{A:B}\right) $$ A γ A : B ofγ A:B commutes with the area$$ \mathcal{A}\left({\gamma}_B\right) $$ A γ B ofγ B . To study the entropic interpretation of$$ \mathcal{A}\left({\gamma}_{A:B}\right) $$ A γ A : B , we analyze the Rényi entropies of subregionAin a fixed-area state of subregionB. We use the gravitational path integral to show that then ≈1 Rényi entropies are then computed by minimizing$$ \mathcal{A}\left({\gamma}_A\right) $$ A γ A over spacetimes defined by a boost angle conjugate to$$ \mathcal{A}\left({\gamma}_B\right) $$ A γ B . In the case where the pieces$$ {\gamma}_{A:B}^B $$ γ A : B B and$$ {\gamma}_{A:B}^{\overline{B}} $$ γ A : B B ¯ intersect at a constant boost angle, a geometric argument shows that then ≈1 Rényi entropy is then given by$$ \frac{\mathcal{A}\left({\gamma}_{A:B}\right)}{4G} $$ A γ A : B 4 G . We discuss how then ≈1 Rényi entropy differs from the von Neumann entropy due to a lack of commutativity of then→ 1 andG →0 limits. We also discuss how the behaviour changes as a function of the width of the fixed-area state. Our results are relevant to some of the issues associated with attempts to use standard random tensor networks to describe time dependent geometries.

Physics↗

Spontaneously broken subsystem symmetries

We investigate the spontaneous breaking of subsystem symmetries directly in the context of continuum field theories by calculating the correlation function of charged operators. Our methods confirm the lack of spontaneous symmetry breaking in some of the existing continuum field theories with subsystem symmetries, as had previously been established based on a careful analysis of the spectrum. We present some novel continuum field theory constructions that do exhibit spontaneous symmetry breaking whenever allowed by general principles. These interesting patterns of symmetry breaking occur despite the fact that all the theories we study are non-interacting.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Quantifying limits on CP violating phases from EDMs in supersymmetry

We revisit the calculation of the electron, neutron, and proton electric dipole moments (EDMs) in the constrained minimal supersymmetric standard model (CMSSM). The relatively large mass of the Higgs boson, m H ≃ 125 GeV coupled with the (as yet) lack of discovery of any supersymmetric particle at the LHC, has pushed the supersymmetry breaking scale to several TeV or higher. Though one might expect this decoupling to have relaxed completely any bounds on the two CP violating phases in the CMSSM (θ μ and θ A ), the impressive experimental improvements in the limits on the EDMs (particularly the electron EDM) still allow us to set constraints of order (0.01–0.1)π on θ A and (0.001–0.1)π on θ μ . We also discuss the impact of future improvements in the experimental limits on supersymmetric models.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗