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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Photometric redshift estimation with convolutional neural networks and galaxy images: Case study of resolving biases in data-driven methods

Deep-learning models have been increasingly exploited in astrophysical studies, but these data-driven algorithms are prone to producing biased outputs that are detrimental for subsequent analyses. In this work, we investigate two main forms of biases: class-dependent residuals, and mode collapse. We do this in a case study, in which we estimate photometric redshift as a classification problem using convolutional neural networks (CNNs) trained with galaxy images and associated spectroscopic redshifts. We focus on point estimates and propose a set of consecutive steps for resolving the two biases based on CNN models, involving representation learning with multichannel outputs, balancing the training data, and leveraging soft labels. The residuals can be viewed as a function of spectroscopic redshift or photometric redshift, and the biases with respect to these two definitions are incompatible and should be treated individually. We suggest that a prerequisite for resolving biases in photometric space is resolving biases in spectroscopic space. Experiments show that our methods can better control biases than benchmark methods, and they are robust in various implementing and training conditions with high-quality data. Our methods hold promises for future cosmological surveys that require a good constraint of biases, and they may be applied to regression problems and other studies that make use of data-driven models. Nonetheless, the bias-variance tradeoff and the requirement of sufficient statistics suggest that we need better methods and optimized data usage strategies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

The ABC of RPV: classification of R-parity violating signatures at the LHC for small couplings

We perform a classification of all potential supersymmetric R-parity violating signatures at the LHC to address the question: are existing bounds on supersymmetric models robust, or are there still signatures not covered by existing searches, allowing LHC scale supersymmetry to be hiding? We analyze all possible scenarios with one dominant RPV trilinear coupling at a time, allowing for arbitrary LSPs and mass spectra. We consider direct production of the LSP, as well as production via gauge-cascades, and find 6 different experimental signatures for the $LL\overline{E}$-case, 6 for the $LQ\overline{D}$-case, and 5 for the $\overline{U}$ $\overline{D}$ $\overline{D}$-case; together these provide complete coverage of the RPV-MSSM landscape. This set of signatures is confronted with the existing searches by ATLAS and CMS. We find all signatures have been covered at the LHC, although not at the sensitivity level needed to probe the direct production of all LSP types. For the case of a dominant $LL\overline{E}$-operator, we use CheckMATE to quantify the current lower bounds on the supersymmetric masses and find the limits to be comparable to or better than the R-parity conserving case. Our treatment can be easily extended to scenarios with more than one non-zero RPV coupling.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Artificial intelligence in cancer research, diagnosis and therapy

Artificial intelligence and machine learning techniques are breaking into biomedical research and health care, which importantly includes cancer research and oncology, where the potential applications are vast. These include detection and diagnosis of cancer, subtype classification, optimization of cancer treatment and identification of new therapeutic targets in drug discovery. While big data used to train machine learning models may already exist, leveraging this opportunity to realize the full promise of artificial intelligence in both the cancer research space and the clinical space will first require significant obstacles to be surmounted. In this Viewpoint article, we asked four experts for their opinions on how we can begin to implement artificial intelligence while ensuring standards are maintained so as transform cancer diagnosis and the prognosis and treatment of patients with cancer and to drive biological discovery.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Cancer genomics predicts disease relapse and therapeutic response to neoadjuvant chemotherapy of hormone sensitive breast cancers

Several studies provide insight into the landscape of breast cancer genomics with the genomic characterization of tumors offering exceptional opportunities in defining therapies tailored to the patient’s specific need. However, translating genomic data into personalized treatment regimens has been hampered partly due to uncertainties in deviating from guideline based clinical protocols. Here we report a genomic approach to predict favorable outcome to treatment responses thus enabling personalized medicine in the selection of specific treatment regimens. The genomic data were divided into a training set of N = 835 cases and a validation set consisting of 1315 hormone sensitive, 634 triple negative breast cancer (TNBC) and 1365 breast cancer patients with information on neoadjuvant chemotherapy responses. Patients were selected by the following criteria: estrogen receptor (ER) status, lymph node invasion, recurrence free survival. The k-means classification algorithm delineated clusters with low- and high- expression of genes related to recurrence of disease; a multivariate Cox’s proportional hazard model defined recurrence risk for disease. Classifier genes were validated by Immunohistochemistry (IHC) using tissue microarray sections containing both normal and cancerous tissues and by evaluating findings deposited in the human protein atlas repository. Based on the leave-on-out cross validation procedure of 4 independent data sets we identified 51-genes associated with disease relapse and selected 10, i.e. TOP2A, AURKA, CKS2, CCNB2, CDK1 SLC19A1, E2F8, E2F1, PRC1, KIF11 for in depth validation. Expression of the mechanistically linked disease regulated genes significantly correlated with recurrence free survival among ER-positive and triple negative breast cancer patients and was independent of age, tumor size, histological grade and node status. Importantly, the classifier genes predicted pathological complete responses to neoadjuvant chemotherapy (P < 0.001) with high expression of these genes being associated with an improved therapeutic response toward two different anthracycline-taxane regimens; thus, highlighting the prospective for precision medicine. Our study demonstrates the potential of classifier genes to predict risk for disease relapse and treatment response to chemotherapies. The classifier genes enable rational selection of patients who benefit best from a given chemotherapy thus providing the best possible care. The findings encourage independent clinical validation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Multimodal X-ray nano-spectromicroscopy analysis of chemically heterogeneous systems

Abstract Understanding the nanoscale chemical speciation of heterogeneous systems in their native environment is critical for several disciplines such as life and environmental sciences, biogeochemistry, and materials science. Synchrotron-based X-ray spectromicroscopy tools are widely used to understand the chemistry and morphology of complex material systems owing to their high penetration depth and sensitivity. The multidimensional (4D+) structure of spectromicroscopy data poses visualization and data-reduction challenges. This paper reports the strategies for the visualization and analysis of spectromicroscopy data. We created a new graphical user interface and data analysis platform named XMIDAS (X-ray multimodal image data analysis software) to visualize spectromicroscopy data from both image and spectrum representations. The interactive data analysis toolkit combined conventional analysis methods with well-established machine learning classification algorithms (e.g. nonnegative matrix factorization) for data reduction. The data visualization and analysis methodologies were then defined and optimized using a model particle aggregate with known chemical composition. Nanoprobe-based X-ray fluorescence (nano-XRF) and X-ray absorption near edge structure (nano-XANES) spectromicroscopy techniques were used to probe elemental and chemical state information of the aggregate sample. We illustrated the complete chemical speciation methodology of the model particle by using XMIDAS. Next, we demonstrated the application of this approach in detecting and characterizing nanoparticles associated with alveolar macrophages. Our multimodal approach combining nano-XRF, nano-XANES, and differential phase-contrast imaging efficiently visualizes the chemistry of localized nanostructure with the morphology. We believe that the optimized data-reduction strategies and tool development will facilitate the analysis of complex biological and environmental samples using X-ray spectromicroscopy techniques.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Exploring interlayer coupling in the twisted bilayer PtTe 2

We have investigated interlayer interactions in the bilayer PtTe 2 system, which influence the electronic energy bands near the Fermi level. Our diffusion Monte Carlo (DMC) calculations for the high-symmetry bilayer stackings (AA, AB, AC) manifest distinct interlayer binding characteristics among the stacking modes by revealing significantly different interlayer separations depending on the stacking, which is critical to understanding the interlayer coupling of the twisted bilayers consisting of various local stacking arrangements. Furthermore, a comparison between the interlayer separations obtained from DMC and density functional theory (DFT) shows that meta-generalized gradient approximation (GGA)-based van der Waals–DFT results agree with DMC for different layer stackings, including twisted bilayers, but only the ground-state AA stacking matches well with GGA-based DFT predictions. This underscores the importance of accurate exchange-correlation potentials even for capturing the stacking-dependent interlayer binding properties. We further show that the variability in DFT-predicted interlayer separations is responsible for the large discrepancy of band structures in the 21 . 79 ∘ twisted bilayer PtTe 2 , affecting its classification as metallic or insulating. These results demonstrate the importance of obtaining a correct description of stacking-dependent interlayer coupling in modeling delicate bilayer systems at finite twists. Published by the American Physical Society 2024

36 MATERIALS SCIENCE↗
DOE OSTI2022

QuantumNAT: quantum noise-aware training with noise injection, quantization and normalization

Parameterized Quantum Circuits (PQC) are promising towards quantum advantage on near-term quantum hardware. However, due to the large quantum noises (errors), the performance of PQC models has a severe degradation on real quantum devices. Take Quantum Neural Network (QNN) as an example, the accuracy gap between noise-free simulation and noisy results on IBMQ-Yorktown for MNIST-4 classification is over 60%. Existing noise mitigation methods are general ones without leveraging unique characteristics of PQC; on the other hand, existing PQC work does not consider noise effect. To this end, we present QuantumNAT, a PQC-specific framework to perform noise-aware optimizations in both training and inference stages to improve robustness. We experimentally observe that the effect of quantum noise to PQC measurement outcome is a linear map from noise-free outcome with a scaling and a shift factor. Motivated by that, we propose post-measurement normalization to mitigate the feature distribution differences between noise-free and noisy scenarios. Furthermore, to improve the robustness against noise, we propose noise injection to the training process by inserting quantum error gates to PQC according to realistic noise models of quantum hardware. Lastly, post-measurement quantization is introduced to quantize the measurement outcomes to discrete values, achieving the denoising effect. Extensive experiments on 8 classification tasks using 6 quantum devices demonstrate that QuantumNAT improves accuracy by up to 43%, and achieves over 94% 2-class, 80% 4-class, and 34% 10-class classification accuracy measured on real quantum computers. The code for construction and noise-aware training of PQC is available in the TorchQuantum library.

Wang, Hanrui↗
DOE OSTI2023

Galaxy Spin Classification. I. Z-wise versus S-wise Spirals with the Chirality Equivariant Residual Network

The angular momentum of galaxies (galaxy spin) contains rich information about the initial condition of the universe, yet it is challenging to efficiently measure the spin direction for the tremendous amount of galaxies that are being mapped by ongoing and forthcoming cosmological surveys. We present a machine-learning-based classifier for the Z-wise versus S-wise spirals, which can help to break the degeneracy in the galaxy spin direction measurement. The proposed chirality equivariant residual network (CE-ResNet) is manifestly equivariant under a reflection of the input image, which guarantees that there is no inherent asymmetry between the Z-wise and S-wise probability estimators. We train the model with Sloan Digital Sky Survey images, with the training labels given by the Galaxy Zoo 1 project. A combination of data augmentation techniques is used during the training, making the model more robust to be applied to other surveys. We find an ~30% increase in both types of spirals when Dark Energy Spectroscopic Instrument (DESI) images are used for classification, due to the better imaging quality of DESI. We verify that the ~7σ difference between the numbers of Z-wise and S-wise spirals is due to human bias, since the discrepancy drops to <1.8σ with our CE-ResNet classification results. We discuss the potential systematics relevant to future cosmological applications.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Better understanding and prediction of antiviral peptides through primary and secondary structure feature importance

The emergence of viral epidemics throughout the world is of concern due to the scarcity of available effective antiviral therapeutics. The discovery of new antiviral therapies is imperative to address this challenge, and antiviral peptides (AVPs) represent a valuable resource for the development of novel therapies to combat viral infection. We present a new machine learning model to distinguish AVPs from non-AVPs using the most informative features derived from the physicochemical and structural properties of their amino acid sequences. To focus on those features that are most likely to contribute to antiviral performance, we filter potential features based on their importance for classification. These feature selection analyses suggest that secondary structure is the most important peptide sequence feature for predicting AVPs. Our Feature-Informed Reduced Machine Learning for Antiviral Peptide Prediction (FIRM-AVP) approach achieves a higher accuracy than either the model with all features or current state-of-the-art single classifiers. Understanding the features that are associated with AVP activity is a core need to identify and design new AVPs in novel systems. The FIRM-AVP code and standalone software package are available at https://github.com/pmartR/FIRM-AVP with an accompanying web application at https://msc-viz.emsl.pnnl.gov/AVPR.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Phasor-Measurement-Unit-Based Data Analytics Using Digital Twin and PhasorAnalytics Software

A major objective of this project was to apply GE’s commercial machine learning and data analytics toolsets to large-scale, real-world, anonymized Phasor Measurement Unit (PMU) datasets in order to extract signatures, correlated and/or causal factors, and precursor patterns associated with significant power system phenomena. The project had a particular emphasis on extraction of insights relevant to asset health monitoring, real-time load modeling and cybersecurity monitoring. Additionally, the team was directed to undertake a comprehensive data quality analysis for the provided datasets and encouraged to estimate the ‘machine-learning readiness’ of the datasets by documenting any major obstacles to the application of commercial machine learning algorithms. To accomplish the aforementioned objectives, the project team’s work centered around the identification of key event signatures and application of the identified event signatures for event detection and event classification. The industry-validated, semi-supervised machine learning strategy employed for event signature identification involved several major tasks, including data-preprocessing, generation of an overabundance of features, normal data identification, normality modeling, and event signature identification through a methodical, quantitative ranking of features in order of relevance to each studied event type. Throughout the project, data quality issues and mitigation techniques were investigated. In this report, insights are provided regarding the readiness of the provided synchrophasor datasets for application of machine learning and data analytics. The methodologies employed for this technical strategy are summarized in this report. With regards to data preprocessing and feature generation, the provided Training and Test Datasets were ingested into GE’s big data environment. Subsequently, the team applied bad data cleansing and data imputation scripts, event detection scripts, and application programming interfaces (APIs) to the datasets for convenient data access. The project team completed development and validation of dozens of physics-based, statistics-based and transformation-based feature functions used for the extraction of over 60 synchrophasor features. Using a new parallel feature generation technology developed on this project, over 60 features have been rapidly generated for the full two years’ worth of Training and Test Dataset data associated with both the Eastern and Western interconnects. Even accommodating for temporal down-sampling inherent to the feature extraction procedure, this parallel feature generation activity resulted in a massive feature set with a storage requirement approximately equal to that of the raw training dataset itself. With regards to normal data identification and normality modeling, a normality model was built using the feature data extracted from the Training Dataset and iteratively refined subsequent to incremental adjustments and expansions of the Training Dataset feature data. With respect to event characterization and signature identification, an event signature identification pipeline was developed and used in conjunction with the normality model to identify over 15 event signatures for key event categories within the Training Dataset. The identified event signatures were used to characterize hundreds of key events in terms of relative severity, duration, and location of the event. An investigation was undertaken to identify correlated and causal factors involved in transformer events. A separate investigation into temporal trends in ring-down analysis results was undertaken to determine possible associations between system dynamics and various other factors such as loading, season or year. To validate the identified event signatures, additional work was undertaken to develop signature-based anomaly detection and classification tools suitable for convenient application to the synchrophasor datasets. The anomaly detection and classification tools, suitable for online application, were then applied to the entirety of the Eastern Interconnect Training and Test Datasets. Performance of the event detection and classification tools was evaluated upon receipt of the Test Dataset event logs (i.e., the labels for events contained in the Test Dataset), and promising results were obtained despite several challenges (documented herein) associated with application of supervised or semi-supervised machine learning methods to large-scale, anonymized datasets. Finally, the detection and classification tools were used to detect, classify, and characterize thousands of new events not included in the original event logs provided by the DOE within both the Training and Test Datasets.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2020

Atmospheric condition identification in multivariate data through a metric for total variation

Identification of atmospheric conditions within a multivariable atmospheric data set is a necessary step in the validation of emerging and existing high-fidelity models used to simulate wind plant flows and operation.Atmospheric conditions relevant for wind energy research include stationary conditions, given the need for well-converged statistics for model validation, as well as conditions observed less frequently, such as extreme atmospheric events, which are used in wind turbine and wind plant design.Aggregation of observations without regard to covariance between time series discounts the dynamical nature of the atmosphere and is not sufficiently representative of atmospheric conditions.Identification and characterization of continuous time periods with atmospheric conditions that have a high value for analysis or simulation set the stage for more advanced model validation and the development of real-time control and operational strategies.The current work explores a single metric for variation in a multivariate data sample that quantifies variability within each channel as well as covariance between channels.The total variation is used to identify conditions of interest that conform to desired objective functions, such as stationary conditions, ramps or waves of wind speed, and changes in wind direction.Total variation is somewhat sensitive to the presence of outliers in the input data, and the method is best complemented by quality-control procedures to ensure reliable results.The direct detection and classification of events or conditions of interest within atmospheric data sets is vital to developing our understanding of wind plant response and to the formulation of forecasting and control models.

17 WIND ENERGY↗
DOE OSTI2025

Results and lessons learned from accelerating radio frequency modeling using machine learning [slides]

The “advanced tokamak” reactor concept is a leading candidate for a steady state fusion pilot plant. An advanced tokamak (AT) sustains a majority of the required plasma current with effects resulting from maintenance of the peaked pressure at the device center. This current is augmented by auxiliary current drive sources. These auxiliary actuators may consist of neutral particle beams and/or radio frequency (RF) systems such as lower hybrid current drive (LHCD) and high harmonic fast wave (HHFW) current drive using radio and microwaves from antennas. The primary focus of this work is to develop models of RF current profile control suitable for use in integrated modeling frameworks and for real-time control in experiments. Direct physics models of RF current drive can be computationally intensive. In order to achieve predictive times appropriate for the thousands of calls needed in real-time control of experiments and for use in integrated models, we will apply modern machine learning (ML) techniques to accelerate these models and interpolate their results. To generate the fast and accurate models for use in control level algorithms and integrated modeling we need to replace present models with high dimensional interpolation of their results. We will perform additional simulations across a broader parameter range for EAST and other tokamaks in different physics regimes (Alcator C-Mod, DIII-D, WEST, CFETR, ARC, ITER) and combine them into a larger database for training and testing of the ML models. Further testing of the control level models with experimental current profile data from EAST and C-Mod tokamaks will provide additional confirmation of the control level model before integration in a tokamak control system or integrated modeling suite. ML will be used to optimize the selection of training data consisting of RF current driven at different values of density profile, temperature profile, plasma current, and wavenumber. ML will also be used to facilitate classification of current drive from these input data. The output of this effort will be a validated classifier capable of determining the current drive profiles for HHFW CD and LHCD on a mille-second timescale. This will provide a breakthrough capability enabling real-time control of RF driven current profiles in experiments including ITER ICRF and use integrated modeling frameworks requiring thousands of current profile calculations in discharge simulations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization

The liquid residue resulting from various agroindustrial processes is both rich in organic material and an attractive source to produce a variety of chemicals. Using microbial communities to produce chemicals from these liquid residues is an active area of research, but it is unclear how to deploy microbial communities to produce specific products from the different agroindustrial residues. To address this, we fed anaerobic bioreactors one of several agroindustrial residues (carbohydrate-rich lignocellulosic fermentation conversion residue, xylose, dairy manure hydrolysate, ultra-filtered milk permeate, and thin stillage from a starch bioethanol plant) and inoculated them with a microbial community from an acid-phase digester operated at the wastewater treatment plant in Madison, WI, United States. The bioreactors were monitored over a period of months and sampled to assess microbial community composition and extracellular fermentation products. We obtained metagenome assembled genomes (MAGs) from the microbial communities in each bioreactor and performed comparative genomic analyses to identify common microorganisms, as well as any community members that were unique to each reactor. Collectively, we obtained a dataset of 217 non-redundant MAGs from these bioreactors. This metagenome assembled genome dataset was used to evaluate whether a specific microbial ecology model in which medium chain fatty acids (MCFAs) are simultaneously produced from intermediate products (e.g., lactic acid) and carbohydrates could be applicable to all fermentation systems, regardless of the feedstock. MAGs were classified using a multiclass classification machine learning algorithm into three groups, organisms fermenting the carbohydrates to intermediate products, organisms utilizing the intermediate products to produce MCFAs, and organisms producing MCFAs directly from carbohydrates. This analysis revealed common biological functions among the microbial communities in different bioreactors, and although different microorganisms were enriched depending on the agroindustrial residue tested, the results supported the conclusion that the microbial ecology model tested was appropriate to explain the MCFA production potential from all agricultural residues.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Asymmetry of the Ferroelectric Phase Transition in BaTiO 3

Symmetry changes during phase transformations fundamentally determine the behavior of thermodynamic systems, governing phenomena as diverse as water evaporation, fermion condensation, and epidemic spreading. Phase transitions are conventionally divided into two classes, and this classification is typically assumed to remain invariant upon reversing the transition. Here, an asymmetric phase transformation is uncovered in the ferroelectric–paraelectric transition of single-crystal BaTiO 3 , a model system for first-order transitions. Under slow temperature variation (≤0.1 °C min −1 ), thermodynamic, dielectric, and domain-structure measurements reveal that the ferroelectric-to-paraelectric transition exhibits latent heat, phase coexistence, and a discontinuous order parameter, while these signatures are absent upon cooling. Complementary phase-field simulations demonstrate similar behavior, attributing it to distinct elastic strain energy accumulation and release during heating and cooling. These findings reveal a first-order character upon heating but a second-order-like behavior upon cooling, challenging the conventional paradigm of symmetric phase-transition classification and suggesting new possibilities for ferroelectric-based energy storage.

Hershkovitz, Asaf [Technion-Israel Institute of Te↗
DOE OSTI2022

Automated Stellar Spectra Classification with Ensemble Convolutional Neural Network

Large sky survey telescopes have produced a tremendous amount of astronomical data, including spectra. Machine learning methods must be employed to automatically process the spectral data obtained by these telescopes. Classification of stellar spectra by applying deep learning is an important research direction for the automatic classification of high-dimensional celestial spectra. In this paper, a robust ensemble convolutional neural network (ECNN) was designed and applied to improve the classification accuracy of massive stellar spectra from the Sloan digital sky survey. We designed six classifiers which consist six different convolutional neural networks (CNN), respectively, to recognize the spectra in DR16. Then, according the cross-entropy testing error of the spectra at different signal-to-noise ratios, we integrate the results of different classifiers in an ensemble learning way to improve the effect of classification. The experimental result proved that our one-dimensional ECNN strategy could achieve 95.0% accuracy in the classification task of the stellar spectra, a level of accuracy that exceeds that of the classical principal component analysis and support vector machine model.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

An Algebra of Machine Learners with Applications

Machine learning (ML) methods are increasingly being applied to solve complex, data-driven problems in diverse areas, by exploiting the physical laws derived from first principles such as thermal hydraulics and the abstract laws developed recently for data and computing infrastructures. These physical and abstract laws encapsulate, typically in compact algebraic forms, the critical knowledge that complements data-driven ML models. We present a unified perspective of these laws and ML methods using an abstract algebra (A;⊕,Ⓧ), wherein the performance estimation and classification tasks are characterized by the additive ⊕ operations, and the diagnosis, reconstruction, and optimization tasks are characterized by the difference Ⓧ operations. This abstraction provides ML codes and their performance characterizations that are transferable across different areas. We describe practical applications of these abstract operations using examples of throughput profile estimation tasks in data transport infrastructures, and power-level and sensor error estimation tasks in nuclear reactor systems.

Rao, Nageswara↗
DOE OSTI2026

Genomic Language model for Annotation of Repetitive Elements (GLARE) v1.0

GLARE (Genomic Language model for Annotation of Repetitive Elements) is a tool that classifies transposable elements (TEs)—the mobile, repetitive DNA sequences that make up large fractions of eukaryotic genomes. GLARE fine-tunes the NTv3-650M genomic language model on a harmonized collection of curated TE sequences from the PanTEon and Repbase reference databases, assigning each input sequence to one of 11 orders and 32 superfamilies in a Wicker-compatible taxonomy. Features. From nucleotide FASTA input, GLARE outputs per-sequence predictions, class summaries, composition figures, and an annotated FASTA. It provides calibrated confidence scores with optional abstention and runs on CPU or GPU. Uses. GLARE serves as a classification component in genome-annotation pipelines, downstream of TE discovery, supporting genome annotation and comparative and evolutionary genomics. Advantages. GLARE is the first repeat-element classifier to leverage a pretrained genomic language model. Combined with multi-database training, this approach outperformed all nine classifiers in the PanTEon benchmark, generalized better to unseen taxonomic clades, and remained robust to sequence orientation—a common failure mode of existing tools.

Bruna, Tomas [Lawrence Berkeley National Laborator↗
DOE OSTI2021

X-Ray Spectra and Multiwavelength Machine Learning Classification for Likely Counterparts to Fermi 3FGL Unassociated Sources

We conduct X-ray spectral fits on 184 likely counterparts to Fermi-LAT 3FGL unassociated sources. Characterization and classification of these sources allows for more complete population studies of the high-energy sky. Most of these X-ray spectra are well fit by an absorbed power-law model, as expected for a population dominated by blazars and pulsars. A small subset of seven X-ray sources have spectra unlike the power law expected from a blazar or pulsar and may be linked to coincident stars or background emission. We develop a multiwavelength machine learning classifier to categorize unassociated sources into pulsars and blazars using gamma-ray and X-ray observations. Training a random forest (RF) procedure with known pulsars and blazars, we achieve a cross-validated classification accuracy of 98.6%. Applying the RF routine to the unassociated sources returned 126 likely blazar candidates (defined as P {sub bzr} ≥ 90%) and five likely pulsar candidates (P {sub bzr} ≤ 10%). Our new X-ray spectral analysis does not drastically alter the RF classifications of these sources compared to previous works, but it builds a more robust classification scheme and highlights the importance of X-ray spectral fitting. Our procedure can be further expanded with UV, visual, or radio spectral parameters or by measuring flux variability.

79 ASTRONOMY AND ASTROPHYSICS↗