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At least 739 records · Page 41

Genomics-enabled analysis of specialized metabolism in bioenergy crops: Current progress and challenges

Plants produce a staggering diversity of specialized small molecule metabolites that play vital roles in mediating environmental interactions and stress adaptation. This chemical diversity derives from dynamic biosynthetic pathway networks that are often species-specific and operate under tight spatiotemporal and environmental control. A growing divide between demand and environmental challenges in food and bioenergy crop production have intensified research on these complex metabolite networks and their contribution to crop fitness. High-throughput omics technologies provide access to ever-increasing data resources for investigating plant metabolism. However, the efficiency of using such system-wide data to decode the gene and enzyme functions controlling specialized metabolism has remained limited; due largely to the recalcitrance of many plants to genetic approaches and the lack of ‘user-friendly’ biochemical tools for studying the diverse enzyme classes involved in specialized metabolism. With emphasis on terpenoid metabolism in the bioenergy crop switchgrass as an example, this review aims to illustrate current advances and challenges in the application of DNA synthesis and synthetic biology tools for accelerating the functional discovery of genes, enzymes and pathways in plant specialized metabolism. These technologies have accelerated knowledge development on the biosynthesis and physiological roles of diverse metabolite networks across many ecologically and economically important plant species and can provide resources for application to precision breeding and natural product metabolic engineering.

59 BASIC BIOLOGICAL SCIENCES↗

Stability, electronic quantum states, and magnetic interactions of Er 3+ ions in Ga 2 ⁢O 3

Here, we report an ab initio study of phase stability, defect formation, electronic structure, and multiple magnetic, Dzyaloshinskii-Moriya, optical, hyperfine, and crystal field interactions in erbium (Er)-doped wide band gap 𝛼- and 𝛽-gallium oxides (Ga 2 ⁢O 3 ), critically important to make a foundation for both optoelectronic and quantum information applications. The chemical, structural, mechanical, and dynamical stabilities of the pristine phases are confirmed from respective negative formation energies, negative cohesive energies, favorable elastic constants, and positive phonon frequencies. The phonon dispersions indicate that the Ga-O bonds are uniform in the 𝛼-phase, while they vary in the 𝛽-phase due to the anisotropic polyhedral movement. The defect formation energy analysis confirms that both Er-doped 𝛼- and 𝛽−Ga 2 ⁢O 3 prefer Er 3+ (neutral) state. The underestimated band gaps of the pristine phases from standard density functional theory (DFT) calculations as compared to experimental values are corrected by employing the hybrid functional calculations, resulting in the indirect band gaps of 5.21 eV in 𝛼−Ga 2 ⁢O 3 and 4.94 eV in 𝛽−Ga 2 ⁢O 3 . The site preference energy analysis indicates partial occupation of Er in the octahedral site of Ga. The anisotropic nature of hyperfine tensor coefficients of Er is similar in both phases, which may be due to the occupation of Er in the same octahedral Ga site. On the other hand, the calculated magnetic exchange interaction between two Er dopants is negative for 𝛼 and positive for 𝛽, indicating an antiferromagnetic (AFM) ground state in the former and a ferromagnetic (FM) ground state in the latter. Large values of Dzyaloshinskii-Moriya interactions (DMIs) are obtained along the 𝑥 direction in the 𝛼 and along the 𝑦 direction in the 𝛽. The large DMI may support exotic magnetic textures, a promising direction for spintronic applications. The analysis of dielectric constants and refractive indices of both pristine and Er-doped phases shows a good agreement with available experimental values. The calculated optical anisotropy is slightly higher in 𝛽 than those in 𝛼, which is due to the involvement of lower symmetry in 𝛽. The crystal field coefficients (CFCs) calculated from DFT are used to analyze 4⁢𝑓 multiplets and 4⁢𝑓 −4⁢𝑓 transitions. Thus calculated lowest energy level of the first excited state to the lowest energy level of the ground state is about 1.53 µ⁢m, which is in a good agreement with available experiments, and it falls within the quantum telecommunication wavelength range.

3-dimensional systems↗

High-dimensional and high-resolution x-ray tomography for energy materials science

At the forefront of developments in synchrotron x-ray microscopy, we report nanoscale-resolution high-dimensional spectrotomography under controlled sample environments has been demonstrated. Such cutting-edge experimental capability has been broadly applied to scientific studies in the field of energy materials science, where the dynamically evolving structural and chemical defects play a vital role in the functionality. In this article, we review novel developments of this technique from both experimental and data/information mining perspectives. Using studies on lithium-ion battery electrode materials as examples, we highlight the rich information in the high-dimensional and high-resolution x-ray tomographic data, which can be used to interpret the complicated thermal-electro-chemo-mechanical interplay that occurs under the operating conditions and collectively determines battery performance. We also discuss the frontier challenges in this field and our perspectives of the future directions in the context of projected major developments in the landscape of largescale x-ray facilities across the globe.

36 MATERIALS SCIENCE↗

Material Resilience in Harsh Service Conditions

Resilience describes the attributes of a material that allow it to withstand or resist detrimental environmental effects degrading properties and performance. In service, materials may experience harsh or extreme conditions, but even modest thermal or load conditions experienced over a long period can degrade performance. Thus, the National Nuclear Security Administration mission requires predictive understanding of materials performance in harsh and extreme conditions over long periods. This performance is particularly relevant for applications in which replacement is impractical, impossible, or costly. This area of leadership addresses the evolution of material properties in environments that include static and dynamic stress, radiation, and chemical or thermal extremes. A particular focus is on situations when environments coexist or for which collection of experimental data is challenging or impossible. The capability to predict and control the nature and evolution of properties to allow designing resilience is a crucial aspect of mission success in national nuclear, global, and energy security.

36 MATERIALS SCIENCE↗

Cooperative Research and Development Agreement between National Energy Technology Laboratory and University of Kentucky (Abstract)

The National Energy Technology Laboratory (NETL) and University of Kentucky (Participant) will collaborate in the development of “Deep Learning Potential-based Molecular Dynamics Simulation Investigation of Chemical Conversion-Absorption Coupling of CO 2 at Air-Reactive Deep Eutectic Solvent Interface.” This project is supported by DOE-Office of Science Graduate Student Research (SCGSR) program and managed by Oak Ridge Institute for Science and Education (ORISE). Deep eutectic solvents (DESs) are promising alternative sorbents for direct air capture (DAC) CO 2 due to their low vapor pressure, low corrosion, non-toxicity, relatively low cost, and biodegradable nature. Understanding the CO 2 reaction-transport mechanisms at the interface can help develop cost-effective DAC by DESs with high capacity and stability. The collaboration will investigate the absorption and chemical conversion of CO 2 at the air-DES interface to facilitate the development of novel DAC technology using reactive DESs. The anticipated results will make DAC more efficient, allow more sustainable use of our Nation’s fossil energy resources, and advance NETL’s ongoing CO 2 capture efforts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Development of an Optimized Gasoline Surrogate Formulation for PACE Experiments and Simulations

New powertrain solutions are needed to address societal challenges stemming in part from a transportation sector which relies heavily on combustion of conventional hydrocarbon fuels like gasoline. One way to advance new solutions is through predictive simulations. Predictive simulations can potentially limit the extent of experimental validations, reduce time spent in engineering design cycles, unlock new strategies for high efficiency combustion with power density, and minimize tailpipe emissions. However, the simulation tools currently available are either too computationally expensive, inadequate in their accuracy, or a combination of the two. A DOE-funded consortium of national laboratories called the Partnership to Advance Combustion Engines (PACE) seeks to address this gap by rapidly delivering new knowledge and tools which enable market-competitive powertrain solutions for light-duty vehicles. Approaches to modeling combustion in powertrain systems typically incorporate computational fluid dynamics (CFD) simulations with chemical kinetic models. These CFD simulations generally use surrogate fuels featuring a limited number of existing components in a reduced kinetic model to limit computational costs. Such surrogate fuels often sacrifice matching several or more combustion and physical properties of the target gasoline fuel. Validation of surrogate fuels is also often only pursued for a small subset of standard metrics such as research or motor octane number (RON, MON). The purpose of this project is to develop an optimal E10 gasoline surrogate fuel suitable for tasks across PACE to facilitate rapid common analysis and progression toward consortium goals. This project received contributions from tasks led by eight PACE principal investigators. The project funding here reflects all tasks under Pitz, whose tasks also contributed to additional PACE projects. Based on the optimal gasoline surrogate fuel composition, a reduced chemical kinetic model will be shared with PACE researchers, industry, and the broader combustion community.

33 ADVANCED PROPULSION SYSTEMS↗

Angular Momentum Variation of the Milky Way Thick Disk: The Dependence of Chemical Abundance and Evidence of the Inside-out Formation Scenario

We investigate the angular momentum of mono-abundance populations (MAPs) of the Milky Way thick disk by using a sample of 26,076 giant stars taken from APOGEE Data Release (DR) 17 and Gaia early DR3. The vertical and perpendicular angular momentum components, L Z and L P , of the MAPs in narrow bins have significant variations across the [α/M]–[M/H] plane. L Z and L P systematically change with [M/H] and [α/M] and can be alternatively quantified by the chemical gradients: d[M/H]/dL Z = 1.2 × 10 -3 dex kpc -1 km -1 s, d[M/H]/dL P = -5.0 × 10 -3 dec kpc -1 km -1 s, and d[α/M]/dL Z = -3.0 × 10 -4 dex kpc -1 km -1 s, d[α/M]/dL P = 1.2 × 10 -3 dec kpc -1 km -1 s. These correlations can also be explained as the chemical dependence of the spatial distribution shape of the MAPs. We also exhibit the corresponding age dependence of the angular momentum components. Under the assumption that the guiding radius (R g ) is proportional to L Z , this provides direct observational evidence of the inside-out structure formation scenario of the thick disk, with dR g /dAge = -1.9 kpc Gyr -1 . The progressive changes in the disk thickness can be explained by the upside-down formation or/and the consequent kinematical heating.

79 ASTRONOMY AND ASTROPHYSICS↗

Phase separation of metallic hydrogen-helium alloys

Calculations are presented for the thermodynamic functions and phase separation boundaries of solid metallic hydrogen helium alloys at temperatures between 0 K and 19,000 K and at pressures between 15 and 90 megabars. Expressions for the band structure energy of a randomly disordered alloy (including third order in the electron ion interaction) are derived and evaluated. Short and long range order are included by the quasi-chemical method, and lattice dynamics in the virtual crystal harmonic approximation. We conclude that at temperatures below 4,000 K there is complete phase separation of hydrogen helium alloys, and that a miscibility gap remains at the highest temperatures and pressures considered. The relevance of these results to models of the deep interior of Jupiter is briefly discussed.

Straus, D. M.↗

Composite propellant combustion modeling with a porous plate burner

A burner is designed to model on a large scale (millimeters) the complex vapor phase processes that take place on awkwardly small scales (about a hundred microns) in the combustion of practical AP/ composite propellants at conventional pressures. Binder vapor evolution is modeled with gaseous fuel (ethane in the experiments reported) flow through a porous plate and oxidizer vapor with the flow of a gaseous oxidizer (air and enriched air in the experiments reported) through discrete holes in the porous plate. Measured flame standoff distance and surface temperature variations are consistent with theoretical predictions at atmospheric pressure. Data obtained at several atmospheres are discussed in the light of the current theories of propellant burning that place varying emphasis on the roles of chemical kinetics and fluid dynamic diffusion/mixing in the vapor phase of a burning composite propellant. The potential and proposed future applications of the burner are indicated.

Kumar, R. N.↗

Phase separation of metallic hydrogen-helium alloys

Calculations are presented for the thermodynamic functions and phase-separation boundaries of solid metallic hydrogen-helium alloys at temperatures between zero and 19,000 K and at pressures between 15 and 90 Mbar. Expressions for the band-structure energy of a randomly disordered alloy (including third order in the electron-ion interaction) are derived and evaluated. Short- and long-range orders are included by the quasi-chemical method, and lattice dynamics in the virtual-crystal harmonic approximation. It is concluded that at temperatures below 4000 K, there is essentially complete phase separation of hydrogen-helium alloys and that a miscibility gap remains at the highest temperatures and pressures considered. The relevance of these results to models of the deep interior of Jupiter is briefly discussed.

Straus, D. M.↗

Thermodynamics of selected trace elements in the Jovian atmosphere

The thermochemistry of several hundred compounds of twelve selected trace elements (Ge, Se, Ga, As, Te, Pb, Sn, Cd, Sb, Tl, In, and Bi) has been investigated for solar composition material along a Jupiter adiabat. The results indicate that AsF3, InBr, TlI, and SbS, in addition to CO, PH3, GeH4, AsH3, H2Se, HCl, HF, and H3BO3 proposed by Barshay and Lewis (1978), may be potential chemical tracers of atmospheric dynamics. The reported observation of GeH4 is interpreted on the basis of new calculations as implying rapid vertical transport from levels where the temperature is greater than or equal to 800 K. Upper limits are also set on the abundances of many gaseous compounds of the elements investigated.

Fegley, B., Jr.↗

Aerosol particles and the formation of advection fog

A study of numerical simulation of the effects of concentration, particle size, mass of nuclei, and chemical composition on the dynamics of warm fog formation, particularly the formation of advection fog, is presented. This formation is associated with the aerosol particle characteristics, and both macrophysical and microphysical processes are considered. In the macrophysical model, the evolution of wind components, water vapor content, liquid water content, and potential temperature under the influences of vertical turbulent diffusion, turbulent momentum, and turbulent energy transfers are taken into account. In the microphysical model, the supersaturation effect is incorporated with the surface tension and hygroscopic material solution. It is shown that the aerosol particles with the higher number density, larger size nuclei, the heavier nuclei mass, and the higher ratio of the Van't Hoff factor to the molecular weight favor the formation of the lower visibility advection fogs with stronger vertical energy transfer during the nucleation and condensation time period.

Hung, R. J.↗

Conference on the Origin of the Moon

Various topics relating to lunar evolution are discussed. The Moon's ancient orbital history, geophysical and geochemical constraints favoring the capture hypothesis, the site of the lunar core, chemical and petrological constraints, dynamical constraints, and mathematical models are among the topics discussed.

Source record↗

UK participation in the Middle Atmosphere Programme

Three general areas of study were identified: stratospheric composition; mesospheric and lower ionospheric structure and composition; and middle atmospheric dynamics. The role of chemical reactions and spectroscope in the study of the middle atmosphere is discussed.

Thomas, L.↗

Tethered satellite design

The capability of the satellite to perform a variety of space operations to be accomplished from the shuttle is reviewed considering use of the satellite with man-in-loop and closed loop modes and deployment (toward or away from Earth, up to 100 km), stationkeeping, retrieval and control of the satellite. Scientific payloads are to be used to perform experiments and scientific investigation for applications such as magnetometry, electrodynamics, atmospheric science, chemical release, communications, plasmaphysics, dynamic environment, and power and thrust generation. The TSS-S will be reused for at least 3 missions after reconfiguration and refurbishment by changing the peculiar mission items such as thermal control, fixed boom for experiments, aerodynamic tail for yaw attitude control, external skin, experiments, and any other feature. The TSS-S is to be composed of three modules in order to allow independent integration of a single module and to facilitate the refurbishment and reconfiguration between flights. The three modules are service, auxiliary propulsion, and payload modules.

Manarini, G.↗

Origin of the moon; Proceedings of the Conference, Kona, HI, October 13-16, 1984

Various topics relating to lunar evolution are discussed. The moon's ancient orbital history, geophysical and geochemical constraints favoring the capture hypothesis, the site of the lunar core, chemical and petrological constraints, dynamical constraints, and mathematical models are among the topics discussed.

Hartmann, W. K.↗

Shuttle Atlantis to deploy Galileo probe toward Jupiter

The objectives of Space Shuttle Mission STS-34 are described along with major flight activities, prelaunch and launch operations, trajectory sequence of events, and landing and post-landing operations. The primary objective of STS-34 is to deploy the Galileo planetary exploration spacecraft into low earth orbit. Following deployment, Galileo will be propelled on a trajectory, known as Venus-Earth-Earth Gravity Assist (VEEGA), by an inertial upper stage (IUS). The objectives of the Galileo mission are to study the chemical composition, state, and dynamics of the Jovian atmosphere and satellites, and investigate the structure and physical dynamics of the Jovian magnetosphere. Secondary STS-34 payloads include the Shuttle Solar Backscatter Ultraviolet (SSBUV) instrument; the Mesoscale Lightning Experiment (MLE); and various other payloads involving polymer morphology, the effects of microgravity on plant growth hormone, and the growth of ice crystals.

Source record↗