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At least 739 records · Page 41

Development of peptoid-based ligands for the removal of cadmium from biological media

Cadmium poisoning poses a serious health concern due to cadmium's increasing industrial use, yet there is currently no recommended treatment. The selective coordination of cadmium in a biological environment—i.e. in the presence of serum ions, small molecules, and proteins—is a difficult task. To address this challenge, a combinatorial library of peptoid-based ligands has been evaluated to identify structures that selectively bind to cadmium in human serum with minimal chelation of essential metal ions. Eighteen unique ligands were identified in this screening procedure, and the binding affinity of each was measured using metal titrations monitored by UV-vis spectroscopy. To evaluate the significance of each chelating moiety, sequence rearrangements and substitutions were examined. Analysis of a metal–ligand complex by NMR spectroscopy highlighted the importance of particular residues. Depletion experiments were performed in serum mimetics and human serum with exogenously added cadmium. These depletion experiments were used to compare and demonstrate the ability of these peptoids to remove cadmium from blood-like mixtures. In one of these depletion experiments, the peptoid sequence was able to deplete the cadmium to a level comparable to the reported acute toxicity limit. Evaluation of the metal selectivity in buffered solution and in human serum was performed to verify minimal off-target binding. These studies highlight a screening platform for the identification of metal–ligands that are capable of binding in a complex environment. They additionally demonstrate the potential utility of biologically-compatible ligands for the treatment of heavy metal poisoning.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Edge localized mode characteristics and divertor heat flux during stationary and transient phase for CFETR hybrid scenario

The study of edge localized mode (ELM) behavior, stationary heat flux and transient heat flux during the ELM crash phase is performed for a China Fusion Engineering Test Reactor (CFETR) 1 GW hybrid mode operation scenario ($R$ = 7.2 m, ${B_{\text{T}}}$ = 6.5 T, ${I_{\text{p}}}$ = 13.78 MA). Modeling and simulation start with a scenario obtained by multi-code integrated modeling on the one modeling framework for integrated tasks framework. Linear stability and nonlinear simulations of ELM dynamics are carried out using the BOUT++ six-field reduced magnetohydrodynamic module, which show a much smaller ELM energy loss (Δ ELM ~ 0.13%) compared to that of a Type-I ELM. Parametric analysis of the weak linear growth rate and small ELM energy loss characteristics shed light on physics corresponding to a grassy ELM regime for CFETR 1 GW hybrid scenario. The transient heat flux on the divertor target during this small ELM phase is investigated using BOUT++. Here we found that upstream radial transport in the scrape-off-layer (SOL) induced by small ELMs is weak, which keeps it in the drift-dominated region. However, the heat flux width is still broadened to ${\lambda _{\text{q}}}$ = 4.64 mm by the increase of separatrix temperature during ELM nonlinear evolution. The impact of transient peak heat load and ELM energy fluence on tungsten melting and net erosion rate of divertor target is evaluated for the first-time using physics-based transport that connects the pedestal with the SOL. Energy fluence caused by a single ELM pulse is below the tungsten melting limit, while tungsten erosion would exceed the material requirements. We conclude that external mitigation methods, such as divertor detachment and advanced divertor geometry are likely needed for the steady state operation of CFETR.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

BY-110 Headspace Sampling Comparison Test: Volume 1

The Hanford Tank Operations Contractor, Washington River Protection Solutions, conducted comparison tests of two Hanford Waste tank vapor sampling systems to determine the relative differences in quantifying Chemicals of Potential Concern (COPC) while sampling the same waste tank. The systems are the traditional in situ, inline headspace sampling (HS) method and the recently developed slipstream sampling unit for testing respirator chemical cartridges known as the cartridge test (CT) rig. The comparison test was performed to determine if results obtained using the CT rig are similar to results obtained using the traditional HS method. Using the CT rig would provide efficiencies in headspace vapors sampling such as applying ALARA principles, minimizing worker entries to the tank farms, and eliminating the physical strain of manually lowering the headspace sampling bundles into the waste tanks. Six sampling events were conducted during January and February 2018 to collect headspace vapor samples from Hanford tank BY-110 with the two systems. Pacific Northwest National Laboratory was tasked with conducting an analysis of the analytical results to assess the comparability of the sampling methods and make recommendations on future testing or deployment of the CT method.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

BY-110 Headspace Sampling Comparison Test: Volume 2: Raw Data

The Hanford Tank Operations Contractor, Washington River Protection Solutions, conducted comparison tests of two Hanford Waste tank vapor sampling systems to determine the relative differences in quantifying Chemicals of Potential Concern (COPC) while sampling the same waste tank. The systems are the traditional in situ, inline headspace sampling (HS) method and the recently developed slipstream sampling unit for testing respirator chemical cartridges known as the cartridge test (CT) rig. The comparison test was performed to determine if results obtained using the CT rig are similar to results obtained using the traditional HS method. Using the CT rig would provide efficiencies in headspace vapors sampling such as applying ALARA principles, minimizing worker entries to the tank farms, and eliminating the physical strain of manually lowering the headspace sampling bundles into the waste tanks. Six sampling events were conducted during January and February 2018 to collect headspace vapor samples from Hanford tank BY-110 with the two systems. Pacific Northwest National Laboratory was tasked with conducting an analysis of the analytical results to assess the comparability of the sampling methods and make recommendations on future testing or deployment of the CT method.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Development of Superconducting Spoke Cavities for High-velocity Applications

To date, superconducting spoke cavities have been designed, developed, and tested for particle velocities up to ?_0~0.6, but there is a growing interest in possible applications of spoke cavities for high-velocity applications. The first task is to explore the design parameter space for low-frequency, high-velocity, single- and double-spoke superconducting cavities in order to determine how each design parameter affects the electromagnetic properties, in particular the surface electromagnetic fields and the shunt impedance. Once an electromagnetically optimized, high-velocity spoke cavity is designed, there are several other characteristics that need to be investigated. These include multipacting scenarios, higher-order mode excitation and suppression, multipole analysis of the accelerating field, and mechanical properties. Finally, the cavity fabrication and testing is performed and evaluated. In this dissertation, we present a detailed account of the full development process for the first high-velocity single-spoke cavity operating at 325 MHz and double-spoke cavity operating at 500 MHz.

Hopper, Christopher↗

Yet Another Discriminant Analysis (YADA): A Probabilistic Model for Machine Learning Applications

This paper presents a probabilistic model for various machine learning (ML) applications. While deep learning (DL) has produced state-of-the-art results in many domains, DL models are complex and over-parameterized, which leads to high uncertainty about what the model has learned, as well as its decision process. Further, DL models are not probabilistic, making reasoning about their output challenging. In contrast, the proposed model, referred to as Yet Another Discriminate Analysis(YADA), is less complex than other methods, is based on a mathematically rigorous foundation, and can be utilized for a wide variety of ML tasks including classification, explainability, and uncertainty quantification. YADA is thus competitive in most cases with many state-of-the-art DL models. Ideally, a probabilistic model would represent the full joint probability distribution of its features, but doing so is often computationally expensive and intractable. Hence, many probabilistic models assume that the features are either normally distributed, mutually independent, or both, which can severely limit their performance. YADA is an intermediate model that (1) captures the marginal distributions of each variable and the pairwise correlations between variables and (2) explicitly maps features to the space of multivariate Gaussian variables. Numerous mathematical properties of the YADA model can be derived, thereby improving the theoretic underpinnings of ML. Validation of the model can be statistically verified on new or held-out data using native properties of YADA. However, there are some engineering and practical challenges that we enumerate to make YADA more useful.

97 MATHEMATICS AND COMPUTING↗

Automatic log analysis with NLP for the CMS workflow handling

The central Monte-Carlo production of the CMS experiment utilizes the WLCG infrastructure and manages daily thousands of tasks, each up to thousands of jobs. The distributed computing system is bound to sustain a certain rate of failures of various types, which are currently handled by computing operators a posteriori. Within the context of computing operations, and operation intelligence, we propose a Machine Learning technique to learn from the operators with a view to reduce the operational workload and delays. This work is in continuation of CMS work on operation intelligence to try and reach accurate predictions with Machine Learning. We present an approach to consider the log files of the workflows as regular text to leverage modern techniques from Natural Language Processing (NLP). In general, log files contain a substantial amount of text that is not human language. Therefore, different log parsing approaches are studied in order to map the log files’ words to high dimensional vectors. These vectors are then exploited as feature space to train a model that predicts the action that the operator has to take. This approach has the advantage that the information of the log files is extracted automatically and the format of the logs can be arbitrary. In this work the performance of the log file analysis with NLP is presented and compared to previous approaches.

Layer, Lukas↗

Evaluation of pre-training large language models on leadership-class supercomputers

Large language models (LLMs) have arisen rapidly to the center stage of artificial intelligence as the foundation models applicable to many downstream learning tasks. However, how to effectively build, train, and serve such models for many high-stake and first-principle-based scientific use cases are both of great interests and of great challenges. Moreover, pre-training LLMs with billions or even trillions of parameters can be prohibitively expensive not just for academic institutions, but also for well-funded industrial and government labs. Furthermore, the energy cost and the environmental impact of developing LLMs must be kept in mind. Here, in this work, we conduct a first-of-its-kind performance analysis to understand the time and energy cost of pre-training LLMs on the Department of Energy (DOE)’s leadership-class supercomputers. Employing state-of-the-art distributed training techniques, we evaluate the computational performance of various parallelization approaches at scale for a range of model sizes, and establish a projection model for the cost of full training. Our findings provide baseline results, best practices, and heuristics for pre-training such large models that should be valuable to HPC community at large. We also offer insights and optimization strategies for using the first exascale computing system, Frontier, to train models of the size of GPT-3 and beyond.

97 MATHEMATICS AND COMPUTING↗

Accelerating End-to-End Deep Learning for Particle Reconstruction using CMS open data

Machine learning algorithms are gaining ground in high energy physics for applications in particle and event identification, physics analysis, detector reconstruction, simulation and trigger. Currently, most data-analysis tasks at LHC experiments benefit from the use of machine learning. Incorporating these computational tools in the experimental framework presents new challenges. This paper reports on the implementation of the end-to-end deep learning with the CMS software framework and the scaling of the end-to-end deep learning with multiple GPUs. The end-to-end deep learning technique combines deep learning algorithms and low-level detector representation for particle and event identification. We demonstrate the end-to-end implementation on a top quark benchmark and perform studies with various hardware architectures including single and multiple GPUs and Google TPU.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Control of the Plasma-Material Interface for Long Pulse Optimization in the Experimental Advanced Superconducting Tokamak (EAST) (Final Report)

This project involved a collaborative effort, led by Dr. Rajesh Maingi of Princeton Plasma Physics Laboratory, to understand and control the plasma-material interface to improve long pulse discharge control and performance in the EAST devices. The focus is on long pulse recycling control and optimization, which can be challenging because of their broad range of materials used for plasma-facing components (PFC) and wall conditioning techniques. The purpose of the EAST device is to demonstrate long-pulse, stable, high performance plasma operation, providing a test-bed for key physics and technology issues for next step devices. As part of these tests, EAST has deployed carbon for the lower divertor PFC, tungsten for the upper divertor, and molybdenum for the main wall. In addition wall coatings are deployed for long pulse recycling control: lithium (Li) via several delivery tools, boronization, and recently also siliconization; for example, in 2013, a layer of SiC was deposited on all of the graphite tiles. Oxygen is also present at trace levels, making for a complex mix of materials and plasma-materials interactions (PMI). This mix of materials and the limited durability of wall coatings, coupled to partially optimized cryo-pumping, lead to evolution of the recycling off the PFCs, which restricts the duration of stationary, high performance, long pulse discharges. Comparing the wall conditioning techniques, Li enables the highest energy confinement and lowest recycling for the longest duration, while also suppressing ELMs in certain discharges. More specifically, research activities at the University of Tennessee focused on heat flux profile measurements in EAST, modeling the surface response, including the bonding energetics and chemical interactions between Li with carbon, tungsten, hydrogen and impurities, in addition to post situ experimental characterization and analysis of the divertor plasma facing components in EAST. This final report describes the overall progress within each of these tasks at the University of Tennessee within the project.

36 MATERIALS SCIENCE↗

Gradient Amine Sorbents for Low Vacuum Swing CO 2 Capture at Ambient Temperature

The growing concerns over CO 2 emissions have led to the development of various methods for CO 2 capture. CO 2 capture by amine-based sorbents has been achieved by temperature (thermal) swing adsorption (TSA) process, pressure swing adsorption (PSA) process, and temperature pressure or vacuuming swing adsorption (TPSA or TVSA) process for CO 2 capture. Amine sorbents for energy-efficient TSA, PSA, VSA, TPSA or TVSA CO 2 capture should possess a capability which allow adsorbed CO 2 to desorb and amine sorbent to be regenerated at low temperatures or low vacuums. Development of such amine sorbents would significantly decrease energy consumption and sorbent degradation during the regeneration step. The objective of this project is to develop a low vacuum swing adsorption (VSA) process for the capture of CO 2 from air. The focus is on the development of amine sorbent which allows CO 2 to adsorb in the form of weakly adsorbed CO 2 . The weakly adsorbed CO 2 species can be collected from the sorbent by applying a low vacuum at ambient temperature. Specifically, no heating (i.e., thermal energy) is needed for regeneration of amine sorbents. This novel sorbent allows VSA to be operated at ambient temperature without a significant energy demand. This process eliminates the energy-intensive heating and cooling process in temperature swing adsorption (TSA) process. Ambient temperature operation could prolong the lifetime of sorbent and minimize the maintenance cost. Extensive sorbent studies with in-situ infrared spectroscopy have revealed the modifications of conventional amine sorbents with additives can increase the fraction of weakly adsorbed CO 2 . The amine sorbents with loaded CO 2 can be regenerated in part by the following approaches: (i) mild heating to temperatures below 70 °C, (ii) flowing purging gas over modified amine sorbents at temperatures below 40 °C, (iii) vacuuming at pressure below 0.2 atm and temperatures below 40 °C. The performance of these modified amine sorbents has been tested in a 60 grams VSA unit at ambient temperatures. The results show that weakly adsorbed CO 2 which can be desorbed from modified amine sorbents with purging gas at 100 cc/min can also be evacuated at a vacuum of 1 psia at room temperature. A preliminary techno- economic analysis indicates the major cost of the VSA process with modified amine sorbents stems from the operation of vacuum pumps. Thus, developing an excellent sealing with minimum leakage for the VSA unit is the most critical task for further the development of this VSA technology.

36 MATERIALS SCIENCE↗

New full-sky studies of the distribution of ultra-high-energy cosmic-ray arrival directions

Ground-based full-sky studies of the angular distribution of arrival directions of ultra-high-energy cosmic rays require combining data from different observatories, such as the Pierre Auger Observatory (Auger) and the Telescope Array (TA), because no single array can cover all declinations. A working group comprising members from the Auger and TA collaborations has been tasked with performing such studies for more than a decade and has found several indications of full-sky anisotropies. Here, we update the results for the large- and medium-scale anisotropy analyses using the latest data from TA, which include corrections for daily and yearly atmospheric effects in data for large-scale anisotropies and looser selection criteria in data for medium-scale anisotropies. We extend the latter one by considering two more galaxy catalogues, consisting of jetted or all AGNs. Finally we also introduce a new angular harmonic space analysis that allows us to measure both the auto-correlation and cross-correlation with all catalogues for all multipoles independently ($\ell_\text{max} = 20$ in this work) and scanning the energy threshold.

Abdul Halim, A. [Adelaide U.]↗

Performance analysis and acceleration of explicit integration for large kinetic networks using batched GPU computations

Abstract—We demonstrate the systematic implementation of recently-developed fast explicit kinetic integration algorithms that solve efficiently N coupled ordinary differential equations (subject to initial conditions) on modern GPUs. We take representative test cases (Type Ia supernova explosions) and demonstrate two or more orders of magnitude increase in efficiency for solving such systems (of realistic thermonuclear networks coupled to fluid dynamics). This implies that important coupled, multiphysics problems in various scientific and technical disciplines that were intractable, or could be simulated only with highly schematic kinetic networks, are now computationally feasible. As examples of such applications we present the computational techniques developed for our ongoing deployment of these new methods on modern GPU accelerators. We show that similarly to many other scientific applications, ranging from national security to medical advances, the computation can be split into many independent computational tasks, each of relatively small-size. As the size of each individual task does not provide sufficient parallelism for the underlying hardware, especially for accelerators, these tasks must be computed concurrently as a single routine, that we call batched routine, in order to saturate the hardware with enough work.

Haidar Ahmad, Azzam↗

Determination of a Generic Human Error Probability Distribution, Part 2: A Dynamic SPAR-H Example Application

Humans are an integral part of a nuclear power plant (NPP) from its construction, to its everyday maintenance and operation. In the nuclear industry there are many approaches to quantifying component reliability, which is called probability risk assessment (PRA). In PRA there are two considerations given to the quantification, static and dynamic. Static is quantified before or after an operation; and dynamic is time dependent, in that the probability changes as real time data are provided. In PRA, the importance of the components is calculated, but what of the importance of the human component? There are several methods for human reliability analysis (HRA), which include but are not limited to: THERP, ATHEANA, CREAM, SPAR-H, ASEP, and SLIM. Each of these methods aims to provide a more accurate and objective human error probability (HEP) quantification. Of the methods listed above, ASEP, THERP, and SPAR-H are all inextricably linked. The Standardized Plant Analysis Risk-Human Reliability Analysis (SPAR-H) method was generated to better generalize the Technique for Human Error Rate Prediction (THERP) and Accident Sequence Precursor (ASEP). THERP is mapped to specific scenario templates, and ASEP is a simplified screening method, while SPAR-H employs generalizations to describe the spectrum of human behavior while maintaining the same theoretical underpinnings. SPAR-H is a well-known and accepted HRA method that uses performance shaping factors (PSFs) to classify inputs to the human component. PSFs capture a wide variety of input data, including plant status, crew dynamics, task description, and psychological aspects of the human operator. Current efforts have been focused to further generalize SPAR-H in to a dynamic framework. These methods can fit into dynamic NPP simulations such as RAVEN / RELAP-7. In order to do this, a dynamic methodology is applied to model the human as would be applied to the components. This method is applied in part one in the accompanying paper.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Multiscale dynamics of reactive fronts in the subsurface

1. Brief summary of progress to date. Major Goals of the Project. Overreaching goals of the proposed activity are to develop an or- ganizing framework to describe nonlinear reactive transport in geologic systems over many length and time scales, and corresponding physics-based adaptive multi-scale hybrid models. We will also provide computational tools for robust uncertainty quantification in hybrid simulations. Major Activities of the Project. The major activities in this reporting period have focused on developing a time-averaging framework for ADR transport (Task 1) and global diagnosis criteria for spatio-temporal algorithm refinement (Task 2), as well as numerical validation and verification of the analytical approaches developed. The main activities are as follows: (a) We use homogenization theory to perform a spatio-temporal upscaling of pore-scale advection- diffusion equation in a periodic porous medium in the presence of fluctuating boundary conditions on some parts of the boundary and nonlinear chemical reaction on the solid-liquid interface and we investigate the constraints under which the macroscopic equation gives an accurate explanation of the underlying physics at the pore scale. We demonstrate that the dynamics at the continuum scale is strongly influenced by the interplay between signal frequency at the boundary and transport processes at the pore level. Furthermore, we show that by choosing appropriate scaling factors, a homogenized equation along with expressions for the effective coefficients reliably describe the concentration of solute at the length and time scales vastly different from physically robust micro-scale provided that some specific scale separation constraints are met. Our analysis proves that if the reaction rate or advection at the micro-scale are large, the effectiveness of the homogenized model is impeded. (b) We test numerically the conditions derived theoretically for advective-diffusive and reactive trans- port in a fracture with planar walls subject to temporally oscillating Dirichlet boundary conditions. The numerical analysis confirms the theoretical predictions. Significant Results. Two paper are in preparation. 2. Description of work yet to be accomplished The Tasks yet to be accomplished are listed below: (a) Quantify the impact of uncertainty in wall geometry of planar fractures on predictions hybrids of ARD transport (b) Develop coupling conditions for time hybridzation (c) Quantify the impact of uncertainty in pore geometry on predictions of hybrids of ARD transport in porous media, i.e. develop stochastic hybrid models (d) Use the hybrids combined with X-Ray tomographic images of pore scale structure (from Dr. Gouze, see letter of collaboration) to model dynamic changes in porosity/permeability

42 ENGINEERING↗

System Modeling Frameworks for Wind Turbines and Plants: Review and Requirements Specifications

System modeling frameworks for wind turbines and plants are used by research groups and industry to design wind energy systems that take into account key trade-offs across performance, cost, and reliability at both the turbine and plant level. The frameworks are exercised using a variety of multi-disciplinary design, analysis and optimization (MDAO) methods. To improve inter-operability and foster collaboration, this report proposes a classification system for the frameworks along dimensions of model fidelity and scope. The classification system is first motivated with reviews the state-of-the-art in the development of software frameworks for integrated wind turbine and plant simulation. Within each major wind turbine and power plant subsystem, a matrix is developed for the disciplines used and the fidelity levels with which each discipline can be modeled. The existing frameworks are then classified according to the matrix. Next, an ontology is proposed that will allow for standardizing how data is transferred between the most common discipline-fidelity combinations used in the frameworks. A common representation of data creates the ability to 1) share system descriptions and analysis results, supporting more transparent benchmarks and comparison, and 2) integrate models together into workflows within and across organizations for improving the efficiency and performance of wind turbine and power plant design processes. Ultimately, this integration leads to better overall wind energy system designs with high performance and low costs.

17 WIND ENERGY↗

Predicting Foreign Language Usage from English-Only Social Media Posts

Social media is known for its multicultural and multilingual interactions, a natural product of which is code-mixing. Multilingual speakers mix languages they tweet to address a different audience, express certain feelings, or attract attention. This paper presents a large-scale analysis of 6 million tweets produced by 23 thousand multilingual users speaking 11 other languages besides English. We rely on this multilingual corpus to build predictive models for a novel task – inferring non- English languages that users speak exclusively from their English tweets. We contrast the predictive power of different linguistic signals and report that lexical content and syntactic structure of English tweets are the most predictive of non-English languages that users speak on Twitter. By analyzing cross-lingual transfer – the influence of non-English languages on various levels of linguistic performance in English, we present novel findings on stylistic and syntactic variations across speakers of 11 languages.

code-swicthing↗

Fuel Thermo-physical Characterization Project: Evaluation of Models to Calculate Thermal Diffusivity of Layered Composites

The Office of Material Management and Minimization Fuel Thermo-physical Characterization Project at Pacific Northwest National Laboratory (PNNL) is tasked with using PNNL facilities and processes to receive irradiated low enriched uranium-molybdenum fuel plate samples and perform analyses in support of the Office of Material Management and Minimization Reactor Conversion Program. This work is in support of the Fuel Development Pillar that is managed by Idaho National Laboratory. A key portion of the scope associated with this project was to measure the thermal properties of fuel segments harvested from plates that were irradiated in the Advanced Test Reactor. Thermal diffusivity of samples prepared from the fuel segments was measured using laser flash analysis. Two models, one developed by PNNL and the other developed by the Technische Universität München (TUM), were evaluated to extract the thermal diffusivity of the uranium-molybdenum alloy from measurements made on the irradiated, layered composites. The experimental data of the “TC” irradiated fuel segment was evaluated using both models considering a three-layer and five-layer system. Both models are in acceptable agreement with one another and indicate that the zirconium diffusion barrier has a minimal impact on the overall thermal diffusivity of the monolithic U-Mo fuel.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗