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DOE OSTI2020

Near-infrared Characterization of Four Massive Stars in Transition Phases

Massive stars typically undergo short-lived post-main-sequence evolutionary phases with strong mass loss and occasional mass eruptions. Many of such massive stars in transition phases have been identified based on their dusty envelopes. The ejected material often veils the stellar photospheres so that the central stars cannot be assigned proper spectral types and evolutionary stages. The infrared spectral range has proved to be ideal for the classification of evolved massive stars and for the characterization of their environments. To improve our knowledge on the central stars of four such dust-enshrouded objects, [GKF 2010] MN 83, [GKF 2010] MN 108, [GKF 2010] MN 109, and [GKF 2010] MN 112, we collect and present their first medium-resolution K-band spectra in the 2.3–2.47 μm region and discuss the location of the stars in the JHK color–color diagram. We find that the emission-line spectra of both MN 83 and MN 112 show characteristics typically seen in luminous blue variable (LBV) stars. In addition, we propose that the presence and strength of the newly reported Mg ii lines might be used as a new complementary criterion to identify LBV candidates. The spectra of the other two objects imply that MN 108 is an O-type supergiant, whereas MN 109 could be an LBV candidate in its active phase. We derive lower limits for the reddening toward the stars and find that three of all dereddened fall into the region of confirmed LBVs.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Discovery top-down proteomics in symbiotic soybean root nodules

Proteomic methods have been widely used to study proteins in complex biological samples to understand biological molecular mechanisms. Most well-established methods (known as bottom-up proteomics, BUP) employ an enzymatic digestion step to cleave intact proteins into smaller peptides for liquid chromatography (LC) mass spectrometry (MS) detection. In contrast, top-down proteomics (TDP) directly characterizes intact proteins including all possible post-translational modifications (PTMs), thus offering unique insights into proteoform biology where combinations of individual PTMs may play important roles. We performed TDP on soybean root nodules infected by the symbiotic Bradyrhizobium japonicum in both the wildtype bacterium and a nifH- mutant, which lacks the ability to fix nitrogen in the soybean root nodule. TDP captured 1648 proteoforms derived from 313 bacterial genes and 178 soybean genes. Leghemoglobin, the most abundant protein in the sample, existed in many truncated proteoforms. Interestingly, these truncated proteoforms were considerably more abundant in the wildtype relative to the nifH- mutant, implicating protease activity as an important factor in nitrogen fixation. Proteoforms with various PTMs and combinations thereof were identified using an unrestricted open modification search. This included less common PTMs such as myristoylation, palmitoylation, cyanylation, and sulfation. In parallel, we collected high resolution MS imaging (MSI) data of intact proteins and biopolymers (<20 kDa due to current technical limitations) from sections of the soybean root nodules using matrix-assisted laser desorption/ionization (MALDI) coupled to high resolution Orbitrap. Several detected proteoforms exhibited unique spatial distributions inside the infection zone and cortex, suggesting functional compartmentalization in these regions. A subset of peaks from the MALDI-MSI were assigned to proteoforms detected in TDP LCMS data based on matching accurate masses. Many of the proteins detected in both LCMS and MALDI-MSI are currently uncharacterized in UniProt: the PTM and spatial information presented here will be valuable in understanding their biological functions. Taken together, our study demonstrates how untargeted TDP approach can provide unique insights into plant proteoform biology. On-going technology developments are expected to further improve TDP coverage for more comprehensive high-throughput analysis of proteoforms.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

Investigating charm quark energy loss in medium with the nuclear modification factor of D 0 -tagged jets

The nuclear modification factor R AA of charm jets, identified by the presence of a D 0 meson among the jet constituents, has been measured for the first time in Pb–Pb collisions at a centre-of-mass energy per nucleon pair $\sqrt{s_{NN}} = 5.02$ TeV with the ALICE detector at the LHC. The D 0 mesons and their charge conjugates are reconstructed from the hadronic decay D 0 → K – π + . Jets are reconstructed from D 0 -meson candidates and charged particles using the anti-k T algorithm with jet resolution parameter R = 0.3, in the jet transverse momentum (p T ) range 5 < $p^{ch}_{T}$$^{jet}$ < 50 GeV/c and pseudorapidity |η ch jet| < 0.6. A hint of reduced suppression in the charm-jet R AA is observed in comparison to inclusive jets in central Pb–Pb collisions with a significance of about 2σ in 20 < $p^{ch}_{T}$$^{jet}$ < 50 GeV/c, suggesting the in-medium energy loss to depend on both the difference between quark and gluon coupling strength (Casimir colour-charge effect) and quark mass (dead-cone effect). The data are compared with model calculations that include mass effects in the in-medium energy loss. Several state-of-the-art models are consistent with the data, with the LIDO model providing the best description of the data in the common kinematic range of inclusive and D 0 -tagged jets, highlighting the role of mass effects in interpreting the results.

Acharya, S. (ORCID:0000000292135329)↗

DOE OSTI2021

Surfactant inhibition mechanisms of carbonate mineral dissolution in shale

Surfactants are common additives to hydraulic fracturing and enhanced oil recovery (EOR) fluids, and are under consideration for amendment to supercritical carbon dioxide for geological carbon sequestration (GCS). The effect of a common anionic surfactant, internal olefin sulfonate (IOS), on mineral dissolution from shale into brine was evaluated. When added to brine at concentrations exceeding the critical micelle concentration (94 mg/L), IOS inhibited carbonate mineral dissolution in an Eagle Ford shale, as well as dissolution of optical quality calcite (the dominant carbonate in the shale). Laser profilometry images provide spatial resolution across > 3 orders of magnitude, and indicate that IOS addition to brine both enhances the formation of new etch pits in calcite, and impedes their further growth. Time-of-flight secondary ion mass spectrometry surface profiles show for the first time that IOS preferentially adsorbs at calcite pit edges versus flat calcite surfaces (i.e., terraces). Surface pressure calculations, sulfur K-edge near edge X-ray absorption fine structure (NEXAFS) spectroscopy results, and density functional theory (DFT) calculations support this observation; the DFT results indicate that the sulfonate head group of the IOS molecule binds strongly to the calcite step site as compared to the terrace site. The S K-edge NEXAFS results indicate that IOS adsorbed more to etched calcite surfaces compared to smooth calcite surfaces. Overall, the results indicate that weak adsorption on flat calcite surfaces (i.e., terraces) disrupts water structure and enhances mass transfer of dissolution, while strong adsorption on calcite pit edges displaces adsorbed water and inhibits further etch pit growth. This work provides the first direct evidence of preferential adsorption of IOS to etched calcite surfaces and links it to macroscopic dissolution kinetics. Finally, this work has implications for surfactant-containing fluids used in hydraulic fracturing, EOR and potentially GCS for subsurface injection into carbonate rich reservoirs.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Native Top-Down Mass Spectrometry Characterization of Model Integral Membrane Protein Bacteriorhodopsin

Bacteriorhodopsin (bR) from Halobacterium salinarum has been a model system for structural biology and is a structural template for the characterization of membrane G-protein couple receptors (GPCRs) in particular. Here, in this study, wild-type bacteriorhodopsin and two single-residue mutants were characterized by native top-down mass spectrometry (nTD-MS) with Orbitrap-based high-energy collision dissociation (HCD) and electron capture dissociation (ECD). After in-source dissociation ejected the membrane protein from detergent micelles, high-resolution native MS measurement allowed for identification of multiple proteoforms as well as lipid-bound forms. Further top-down MS measurements by HCD produced a large number of product ions for in-depth sequencing and unambiguous localization of post-translational modifications. For the first time, native TD-MS with ECD was used to characterize an integral membrane protein. ECD yielded fragments originating from all helices and loop regions, even accessing a sequence stretch that HCD could not. Combining HCD and ECD fragmentation patterns significantly enhanced the sequence coverage of bR. We propose bR to be a model analyte for testing nTD-MS performance for membrane proteins.

crystal cleavage↗

DOE OSTI2022

Identification of a quasi-liquid phase at solid–liquid interface

Abstract An understanding of solid–liquid interfaces is of great importance for fundamental research as well as industrial applications. However, it has been very challenging to directly image solid–liquid interfaces with high resolution, thus their structure and properties are often unknown. Here, we report a quasi-liquid phase between metal (In, Sn) nanoparticle surfaces and an aqueous solution observed using liquid cell transmission electron microscopy. Our real-time high-resolution imaging reveals a thin layer of liquid-like materials at the interfaces with the frequent appearance of small In nanoclusters. Such a quasi-liquid phase serves as an intermediate for the mass transport from the metal nanoparticle to the liquid. Density functional theory-molecular dynamics simulations demonstrate that the positive charges of In ions greatly contribute to the stabilization of the quasi-liquid phase on the metal surface.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Characterizing TES Power Noise for Future Single Optical-Phonon and Infrared-Photon Detectors

In this letter, we present the performance of a 100 μm × 400 μm × 40 nm W Transition-Edge Sensor with a critical temperature of 40 mK. This device has a noise equivalent power of 1.5×10-18 W/Hz, in a bandwidth of 2.6 kHz, indicating a resolution for Dirac delta energy depositions of 40 ± 5 meV (rms). The performance demonstrated by this device is a critical step toward developing a O(100) meV threshold athermal phonon detector for low-mass dark matter searches.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2021

Considerations for the modeling of the laser ablation region of ICF targets with Lagrangian simulations

Recently, much effort has been dedicated to the improvement of models and modeling choices utilized in radiation hydrodynamic simulations of direct drive inertial confinement fusion experiments in an effort to improve their predictive capability. In this paper, we consider the choice in mesh for the simulation of the laser ablation of a direct-drive-like target and compare Lagrangian simulations with various mesh zoning choices with Eulerian simulations with fixed resolution in the laser energy deposition region. Using these simulations, we demonstrate how errors in ablation pressure, laser deposition rate, shock speed, and density profile arise from insufficient zoning following from the conservation of mass of Lagrangian zones. These considerations place stringent requirements on the initial t = 0 zoning in the solid density shell for simulations aiming at resolving the ablation and laser absorption region. However, with sufficiently fine zoning in the t = 0 shell, agreement with Eulerian simulations and analytic scaling laws can be recovered.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2026

Improving ICARUS track reconstruction algorithms

The ICARUS experiment is part of the Short-Baseline Neutrino program at Fermilab. Its primary objective is to explore the possible existence of sterile neutrinos in the O(1 eV) mass range and to clarify the anomalies observed in the Liquid Scintillator Neutrino Detector and MiniBooNE experiments. The ICARUS-T600 detector is a Liquid Argon Time Projection Chamber, capable of producing high-resolution 3D images and precise calorimetric measurements of ionizing particles. This technology allows for a detailed study of neutrino interactions across a broad energy range, from a few keV to several hundred GeV. The track reconstruction is achieved through a software framework that applies a series of pattern recognition algorithms, transforming raw detector signals into fully reconstructed event topologies. This process involves identifying interaction vertices, particle tracks, and electromagnetic showers within the TPC. However, in certain cases, these algorithms may mistakenly break a single particle track into several shorter segments, interpreting each as a distinct particle. Since track length is used to estimate the particle's energy, such fragmentation can result in an energy underestimation of several hundred MeV. Furthermore, when a track is split into multiple segments, the particle identification (which relies on analyzing the energy loss as a function of the residual range) may fail, potentially leading to the loss of the entire event. To mitigate this problem, we have developed a dedicated algorithm designed to identify and reconnect (“stitch”) the tracks that were erroneously divided into multiple segments.

Ricci, Alessandro Maria [Pisa U.; INFN, Pisa] (ORC↗

DOE OSTI2025

First Limits on Light Dark Matter Interactions in a Low Threshold Two-Channel Athermal Phonon Detector from the TESSERACT Collaboration

We present results of a search for spin-independent dark matter-nucleus interactions in a 1 cm 2 by 1 mm thick (0.233 g) high-resolution silicon athermal phonon detector operated above ground. For interactions in the substrate, this detector achieves an rms baseline energy resolution of 361.5⁢(4) m⁢ eV (statistical error), the best for any athermal phonon detector to date. With an exposure of 0.233 g ×12 hours, we place the most stringent constraints on dark matter masses between 44 and 87 M⁢ eV/c 2 , with the lowest unexplored cross section of 4⁢ × 10 −32 c⁢m 2 at 87 M⁢ eV/c 2 . We employ a conservative salting technique to reach the lowest dark matter mass ever probed via direct detection experiment. This constraint is enabled by two-channel rejection of low energy backgrounds that are coupled to individual sensors.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

Material Effects on Electron-Capture Decay in Cryogenic Sensors

Several current searches for physics beyond the standard model are based on measuring the electron-capture (EC) decay of radionuclides implanted into cryogenic high-resolution sensors. The sensitivity of these experiments has already reached the level where systematic effects related to atomic state energy changes from the host material are a limiting factor. One example is a neutrino mass study based on the nuclear EC decay of 7 Be to 7 Li inside cryogenic Ta-based sensors. Here, to understand the material effects at the required level, we use density-functional theory to model the electronic structure of lithium atoms in different atomic environments of the polycrystalline Ta absorber film. The calculations reveal that the Li 1s binding energies can vary by more than 2 eV due to insertion at different lattice sites, at grain boundaries, in disordered Ta, and in the vicinity of various impurities. However, the total range of Li 1s shifts does not exceed 4 eV, even for extreme amorphous disorder. Furthermore, when investigating the effects on the Li 2s levels, we find broadening of more than 5 eV due to hybridization with the Ta band structure. Material effects are shown to contribute significantly to peak broadening in Ta-based sensors that are used to search for physics beyond the standard model in the EC decay of 7 Be, but they do not explain the full extent of observed broadening. Understanding these in-medium effects will be required for current- and future-generation experiments that observe low-energy radiation from the EC decay of implanted isotopes to evaluate potential limitations on the measurement sensitivity.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Multiplicity dependence of charged-particle intra-jet properties in pp collisions at $\sqrt{s}$ = 13 TeV

The first measurement of the multiplicity dependence of intra-jet properties of leading charged-particle jets in proton–proton (pp) collisions is reported. The mean charged particle multiplicity and jet fragmentation distributions are measured in minimum-bias and high-multiplicity pp collisions at center-of-mass energy $\sqrt{s}$ = 13 TeV using the ALICE detector. Jets are reconstructed from charged particles produced in the midrapidity region (|η| < 0.9) using the sequential recombination anti-k T algorithm with jet resolution parameters R = 0.2, 0.3, and 0.4 for the trans verse momentum (p T ) interval 5–110 GeV/c. The high multiplicity events are selected by the forward V0 scintilla tor detectors. The mean charged-particle multiplicity inside the leading jet cone rises monotonically with increasing jet p T in qualitative agreement with previous measurements at lower energies. The distributions of jet fragmentation function variables z ch and ξ ch are measured for different jet-p T intervals. Jet-p T independent fragmentation of leading jets is observed for wider jets except at high- and low-z ch values. The observed “hump-backed plateau” structure in the ξ ch distribution indicates suppression of low-p T particles. In high-multiplicity events, an enhancement of the fragmen tation probability of low-z ch particles accompanied by a suppression of high-zch particles is observed compared to minimum-bias events. This behavior becomes more promi nent for low-p T jets with larger jet radius. The results are compared with predictions of QCD-inspired event generators, PYTHIA 8 with Monash 2013 tune and EPOS LHC. It is found that PYTHIA 8 qualitatively reproduces the jet modification in high-multiplicity events except at high jet p T . These measurements provide important constraints to models of jet fragmentation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

How does vertical wind shear influence entrainment in squall lines?

The influence of vertical wind shear on updraft entrainment in squall lines is not well understood. To address this knowledge gap, a suite of high-resolution idealized numerical model simulations of squall lines were run in various vertical wind shear (hereafter “shear”) environments to study the effects of shear on entrainment in deep convective updrafts. Low-level horizontal mass flux into the leading edge of the cold pool was strongest in the simulations with the strongest low-level shear. These simulations consequently displayed wider updrafts, less entrainment-driven dilution, and larger buoyancy than the simulations with comparatively weak low-level shear. An analysis of vertical accelerations along trajectories that passed through updrafts showed larger net accelerations from buoyancy in the simulations with stronger low-level shear, which demonstrates how less entrainment-driven dilution equated to stronger updrafts. Additionally, the effects of upper-level shear on entrainment and updraft vertical velocities were generally less pronounced than the effects of low-level shear. We argue that in addition to the outflow boundary-shear interactions and their effect on updraft tilt established by previous authors, decreased entrainment-driven dilution is yet another beneficial effect of strong low-level shear on squall line updraft intensity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

HOLISMOKES IX. Neural network inference of strong-lens parameters and uncertainties from ground-based images

Modeling of strong gravitational lenses is a necessity for further applications in astrophysics and cosmology. With the large number of detections in current and upcoming surveys, such as the Rubin Legacy Survey of Space and Time (LSST), it is pertinent to investigate automated and fast analysis techniques beyond the traditional and time-consuming Markov chain Monte Carlo sampling methods. Building upon our (simple) convolutional neural network (CNN), we present here another CNN, specifically a residual neural network (ResNet), that predicts the five mass parameters of a singular isothermal ellipsoid (SIE) profile (lens center x and y, ellipticity e x and e y , Einstein radius θ E ) and the external shear (γ ext, 1 , γ ext, 2 ) from ground-based imaging data. In contrast to our previous CNN, this ResNet further predicts the 1σ uncertainty for each parameter. To train our network, we use our improved pipeline to simulate lens images using real images of galaxies from the Hyper Suprime-Cam Survey (HSC) and from the Hubble Ultra Deep Field as lens galaxies and background sources, respectively. We find very good recoveries overall for the SIE parameters, especially for the lens center in comparison to our previous CNN, while significant differences remain in predicting the external shear. From our multiple tests, it appears that most likely the low ground-based image resolution is the limiting factor in predicting the external shear. Given the run time of milli-seconds per system, our network is perfectly suited to quickly predict the next appearing image and time delays of lensed transients. Therefore, we use the network-predicted mass model to estimate these quantities and compare to those values obtained from our simulations. Unfortunately, the achieved precision allows only a first-order estimate of time delays on real lens systems and requires further refinement through follow-up modeling. Nonetheless, our ResNet is able to predict the SIE and shear parameter values in fractions of a second on a single CPU, meaning that we are able to efficiently process the huge amount of galaxy-scale lenses expected in the near future.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

A Search for Correlations between Turbulence and Star Formation in LITTLE THINGS Dwarf Irregular Galaxies

Turbulence has the potential for creating gas density enhancements that initiate cloud and star formation (SF), and it can be generated locally by SF. To study the connection between turbulence and SF, we looked for relationships between SF traced by FUV images, and gas turbulence traced by kinetic energy density (KED) and velocity dispersion (v {sub disp}) in the LITTLE THINGS sample of nearby dIrr galaxies. We performed 2D cross-correlations between FUV and KED images, measured cross-correlations in annuli to produce correlation coefficients as a function of radius, and determined the cumulative distribution function of the cross-correlation value. We also plotted on a pixel-by-pixel basis the locally excess KED, v {sub disp}, and H i mass surface density, Σ{sub HI}, as determined from the respective values with the radial profiles subtracted, versus the excess SF rate density Σ{sub SFR}, for all regions with positive excess Σ{sub SFR}. We found that Σ{sub SFR} and KED are poorly correlated. The excess KED associated with SF implies a ∼0.5% efficiency for supernova energy to pump local H i turbulence on the scale of the resolution here, which is a factor of ∼2 too small for all of the turbulence on a galactic scale. The excess v {sub disp} in SF regions is also small, only ∼0.37 km s{sup −1}. The local excess in Σ{sub HI} corresponding to an excess in Σ{sub SFR} is consistent with a H i consumption time of ∼1.6 Gyr in the inner parts of the galaxies. The similarity between this timescale and the consumption time for CO implies that CO-dark molecular gas has comparable mass to H i in the inner disks.

74 ATOMIC AND MOLECULAR PHYSICS↗

DOE OSTI2022

Performance Evaluation of the Meteorology and Air Quality Conditions From Multiscale WRF-CMAQ Simulations for the Long Island Sound Tropospheric Ozone Study (LISTOS)

The Long Island Sound (LIS) Tropospheric Ozone Study was a multi-agency collaborative field campaign conducted during the summer of 2018 to improve the understanding of ozone chemistry and transport from New York City to areas downstream, especially the LIS and adjacent Connecticut coastline. Measurements made during this campaign were leveraged to test and evaluate the coupled WRF-CMAQ model at 12 km, 4 and 1.33 km horizontal grid spacing. Special attention was placed on the model's representation of sea breeze circulations, low level jets, and boundary layer evolution. The evaluation suggests using higher resolutions resulted in improved surface meteorology statistics throughout the whole summer, with temperature biases seeing the biggest statistical improvements when using 1.33-km grid spacing, going from –0.12 to 0.08 K. Additionally, 4-km grid spacing provided the biggest advantage when simulating ozone over the region of interest, with biases being reduced from 2.40 to 0.57 to 0.37 ppbV with increased resolution. Case studies of two high ozone concentration events (July 10 and August 6) revealed that sound breezes and low-level jets had a critical role in transporting pollutant-rich, shallow marine air masses from the LIS inland over the Connecticut coast. Modifications were made to the representation of sea surface temperatures, which subsequently improved the simulation of surface ozone predictions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Evaluating the performance of a high resolution SLIM IM module integrated with an Agilent 6560 IM-QTOF MS

Integrate a combined Structures of Lossless Ion Manipulations (SLIM) module that incorporates both constant (not time-varying) field (CF) and oscillatory (time-varying) field (OF) IM separation stages into an Agilent 6560 IM-QTOF mass spectrometer system. Once the SLIM module has been integrated into the Agilent system, its performance will be evaluated using a variety of different samples.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

A Rotation Rate for the Planetary-mass Companion DH Tau b

DH Tau b is a young planetary-mass companion orbiting at a projected separation of 320 au from its ∼2 Myr old host star DH Tau. With an estimated mass of 8–22 M{sub Jup} this object straddles the deuterium-burning limit, and might have formed via core or pebble accretion, disk instability, or molecular cloud fragmentation. To shed light on the formation history of DH Tau b, we obtain the first measurement of rotational line broadening for this object using high-resolution (R ∼ 25,000) near-infrared spectroscopy from Keck/NIRSPEC. We measure a projected rotational velocity (v sin i) of 9.6 ± 0.7 km s{sup −1}, corresponding to a rotation rate that is between 9% and 15% of DH Tau b’s predicted breakup speed. This low rotation rate is in good agreement with scenarios in which magnetic coupling between the companion and its circumplanetary disk during the late stages of accretion reduces angular momentum and regulates spin. We compare the rotation rate of DH Tau b to published values for other planetary-mass objects with masses between 0.3 and 20 M{sub Jup} and find no evidence of a correlation between mass and rotation rate in this mass regime. Finally, we search for evidence of individual molecules in DH Tau b’s spectrum and find that it is dominated by CO and H{sub 2}O, with no evidence of the presence of CH{sub 4}. This agrees with expectations given DH Tau b’s relatively high effective temperature (∼2300 K).

79 ASTRONOMY AND ASTROPHYSICS↗