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At least 721 records · Page 40

The ribosomal gene spacer region in archaebacteria

Sequences for the spacer regions that separate the 16S and 23S ribosomal RNA genes have been determined for four more (strategically placed) archaebacteria. These confirm the general rule that methanogens and extreme halophiles have spacers that contain a single tRNAala gene, while tRNA genes are not found in the spacer region of the true extreme thermophiles. The present study also shows that the spacer regions from the sulfate reducing Archaeglobus and the extreme thermophile Thermococcus (both of which cluster phylogenetically with the methanogens and extreme halophiles) contain each a tRNAala gene. Thus, not only all methanogens and extreme halophiles show this characteristic, but all organisms on the "methanogen branch" of the archaebacterial tree appear to do so. The finding of a tRNA gene in the spacer region of the extreme thermophile Thermococcus celer is the first known phenotypic property that links this organism with its phylogenetic counterparts, the methanogens, rather than with its phenotypic counterparts, the sulfur-dependent extreme thermophiles.

Non-NASA Center↗

Climatic forcing of carbon-oxygen isotopic covariance in temperate-region marl lakes

Carbon and oxygen stable isotopic compositions of lacustrine carbonate from a southeastern Michigan marl lake display linear covariance over a range of 4.0% Peedee belemnite (PDB) in oxygen and 3.9% (PDB) in carbon. Mechanisms of delta 13 C-delta 18 O coupling conventionally attributed to lake closure in arid-region basins are inapplicable to hydrologically open lake systems. Thus, an alternative explanation of isotopic covariance in temperate region dimictic marl lakes is required. We propose that isotopic covariance is a direct record of change in regional climate. In short-residence-time temperate-region lake basins, summer meteoric precipitation is enriched in 18O relative to winter values, and summer organic productivity enriches epilimnic dissolved inorganic carbon in 13C. Thus, climate change toward longer summers and/or shorter winters could result in greater proportions of warm-month meteoric precipitation, longer durations of warm-month productivity, and net long-term enrichment in carbonate 18O and 13C. Isotopic covariance observed in the Michigan marl lake cores is interpreted to reflect postglacial warming from 10 to 3 ka followed by cooler mean annual temperature, a shift toward greater proportions of seasonal summer precipitation, a shortening of the winter season, or some combination of these three factors.

NASA Discipline Number 52-30↗

Curvature in Arabidopsis inflorescence stems is limited to the region of amyloplast displacement

Gravitropic sensing in stems and stem-like organs is hypothesized to occur in the endodermis. However, since the endodermis runs the entire length of the stem, the precise site of gravisensing has been difficult to define. In this investigation of gravisensitivity in inflorescence stems of Arabidopsis, we positioned stems in a high gradient magnetic field (HGMF) on a rotating clinostat. Approximately 40% of the young, wild-type (WT) inflorescences, for all positions tested, curved toward the HGMF in the vicinity of the stem exposed to the field. In contrast, when the wedge was placed in the basal region of older inflorescence stems, no curvature was observed. As a control, the HGMF was applied to a starchless mutant, and 5% of the stems curved toward the field. Microscopy of the endodermis in the WT showed amyloplast displacement in the vicinity of the HGMF. Additional structural studies demonstrated that the basal region of WT stems experienced amyloplast displacement and, therefore, suggest this region is capable of gravity perception. However, increased lignification likely prevented curvature in the basal region. The lack of apical curvature after basal amyloplast displacement indicates that gravity perception in the base is not transmitted to the apex. Thus, these results provide evidence that the signal (and thus, response) resulting from perception in Arabidopsis inflorescence stems is spatially restricted.

NASA Discipline Plant Biology↗

Characterization of Asian Dust Properties Near Source Region During ACE-Asia

Asian dust typically originates in desert areas far from polluted urban regions. During transport, dust layers can interact with anthropogenic sulfate and soot aerosols from heavily polluted urban areas. Added to the complex effects of clouds and natural marine aerosols, dust particles reaching the marine environment can have drastically different properties than those from the source. Thus, understanding the unique temporal and spatial variations of Asian aerosols is of special importance in regional-to-global climate issues such as radiative forcing, the hydrological cycle, and primary biological productivity in the mid-Pacific Ocean. During ACE-Asia campaign, we have acquired ground- based (temporal) and satellite (spatial) measurements to infer aerosol physical/optical/radiative properties, column precipitable water amount, and surface reflectivity over this region. The inclusion of flux measurements permits the determination of aerosol radiative flux in addition to measurements of loading and optical depth. At the time of the Terra/MODIS, SeaWiFS, TOMS and other satellite overpasses, these ground-based observations can provide valuable data to compare with satellite retrievals over land. In this paper, we will demonstrate new capability of the Deep Blue algorithm to track the evolution of the Asian dust storm from sources to sinks. Although there are large areas often covered by clouds in the dust season in East Asia, this algorithm is able to distinguish heavy dust from clouds over the entire regions. Examination of the retrieved daily maps of dust plumes over East Asia clearly identifies the sources contributing to the dust loading in the atmosphe~~. We have compared the satellite retrieved aerosol optical thickness to the ground-based measurements and obtained a reasonable agreement between these two. Our results also indicate that there is a large difference in the retrieved value of spectral single scattering albedo of windblown dust between different sources in East Asia.

Tsay, Si-Chee↗

A Survey of Large Molecules of Biological Interest toward Selected High Mass Star Forming Regions

We have surveyed three high mass Galactic star forming regions for interstellar methanol (CH3OH), formic acid (HCOOH), acetic acid (CH3COOH), methyl formate (HCOOCH3), methyl cyanide (CH3CN), and ethyl cyanide (CH3CH2CN) with the BIMA Array. From our observations, we have detected two new sources of interstellar HCOOH toward the hot core regions G19.61-0.23 and W75N. We have also made the first detections of CH3CH2CN and HCOOCH3 toward G19.61-0.23. The relative HCOOH/HCOOCH3 abundance ratio toward G19.61-0.23 is 0.18 which is comparable to the abundance ratios found by Liu and colleagues toward Sgr B2(N-LMH), Orion and W51(approximately 0.10). We have made the first detection of HCOOCH3 toward W75N. The relative HCOOH/HCOOCH3 abundance ratio toward W75N is 0.26 which is more than twice as large as the abundance ratios found by Liu and colleagues. Furthermore, the hot core regions around W75N show a chemical differentiation between the O and N cores similar to what is seen toward the Orion Hot Core and Compact Ridge and W3(OH) and W3(H2O). It is also apparent from our observations that the high mass star forming region G45.47+0.05 does not contain any compact hot molecular core and as a consequence its chemistry may be similar to cold dark clouds. Finally, the formation of CH3COOH appears to favor HMCs with well mixed N and O, despite the fact that CH3COOH does not contain a N atom. If proved to be true, this is an important constraint on CH3COOH formation and possibly other structurally similar biomolecules.

Remijan, A.↗

Involvement of the N-terminal region in alpha-crystallin-lens membrane recognition

Previous studies have demonstrated that alpha-crystallin binds specifically, in a saturable manner, to lens membrane. To determine the region of the alpha-crystallin molecule that might be involved in this binding, native alpha-crystallin from the bovine lens has been treated by limited digestion with trypsin, to produce alpha-A molecules with an intact C-terminal region, and a nicked N-terminal region. Compared to intact alpha-crystallin, trypsin-treated alpha-crystallin binds less avidly to lens membrane, suggesting that the N-terminal region of the alpha-A molecule may play a key role in the recognition between lens membrane and crystallin.

Non-NASA Center↗

Remote Sensing and Spatial Growth Modeling Coupled with Air Quality Modeling to Assess the Impact of Atlanta, Georgia on the Local and Regional Environment

The growth of cities, both in population and areal extent, appears as an inexorable process. Urbanization continues at a rapid rate, and it is estimated that by the year 2025, 80 percent of the world s population will live in cities. Directly aligned with the expansion of cities is urban sprawl. Urban expansion has profound impacts on a host of biophysical, environmental, and atmospheric processes. A reduction in air quality over cities is a major result of these impacts. Strategies that can be directly or indirectly implemented to help remediate air quality problems in cities and that can be accepted by political decision makers and the general public are now being explored to help bring down air pollutants and improve air quality. The urban landscape is inherently complex and this complexity is not adequately captured in air quality models, particularly the Community Multiscale Air Quality (CMAQ) model that is used to assess whether urban areas are in attainment of EPA air quality standards, primarily for ground level ozone. This inadequacy of the CMAQ model to sufficiently respond to the heterogeneous nature of the urban landscape can impact how well the model predicts ozone pollutant levels over metropolitan areas and ultimately, whether cities exceed EPA ozone air quality standards. We are exploring the utility of high-resolution remote sensing data and urban spatial growth modeling (SGM) projections as improved inputs to the meteorology component of the CMAQ model focusing on the Atlanta, Georgia metropolitan area as a case study. These growth projections include "business as usual" and "smart growth" scenarios out to 2030. The growth projections illustrate the effects of employing urban heat island mitigation strategies, such as increasing tree canopy and albedo across the Atlanta metro area, which in turn, are used to model how ozone and air temperature can potentially be moderated as impacts on elevating ground-level ozone, as opposed to not utilizing heat island mitigation strategies. The National Land Cover Dataset at 30m resolution is being used as the land use/land cover input and aggregated to the 4km scale for the MM5 mesoscale meteorological model and the (CMAQ) modeling schemes. Use of these data have been found to better characterize low density/suburban development as compared with USGS 1km land use/land cover data that have traditionally been used in modeling. Air quality prediction for future scenarios to 2030 is being facilitated by land use projections using a spatial growth model. Land use projections were developed using the 2030 Regional Transportation Plan developed by the Atlanta Regional Commission, the regional planning agency for the area. This allows the State Environmental Protection agency to evaluate how these transportation plans will affect future air quality. The coupled SGM and air quality modeling approach provides insight on what the impacts of Atlanta s growth will be on the local and regional environment and exists as a mechanism that can be used by policy makers to make rationale decisions on urban growth and sustainability for the metropolitan area in the future.

Quattrochi, Dale A.↗

CIV Vacuum Ultraviolet Fabry-Perot Interferometers for Transition-Region Magnetography

The vacuum ultraviolet region allows remote sensing of the upper levels of the solar atmosphere where the magnetic field dominates the physics. Obtaining an imaging interferometer that observes the transition region is the goal of this program. This paper gives a summary of our instrument development program (1998-2005) for a high-spectral-resolution, piezoelectric tunable Vacuum Ultraviolet Fabry-Perot Interferometer (VUV FPI) for obtaining narrow-passband images, magnetograms, and Dopplergrams of the transition region emission line of CN (155nm). A VUV interferometer will allow us to observe the magnetic field, flows, and heating events in the mid-transition region. The MSFC VUV FPI has measured values of FWHM approx. 9pm, FSR approx. 62pm, finesse approx. 5.3 and transmittance approx. 50% at 157nm. For the measurements, the University of Toronto's F2 eximer laser was used as an appropriate proxy for CIV 155nm. This has provided the first tunable interferometer with a FWHM compatible to VUV filter magnetograph.

Gary, G. Allen↗

Spatial Growth Modeling and High Resolution Remote Sensing Data Coupled with Air Quality Modeling to Assess the Impact of Atlanta, Georgia on the Local and Regional Environment

The growth of cities, both in population and areal extent, appears as an inexorable process. Urbanization continues at a rapid rate, and it is estimated that by the year 2025, 60 percent of the world s population will live in cities. Urban expansion has profound impacts on a host of biophysical, environmental, and atmospheric processes within an urban ecosystems perspective. A reduction in air quality over cities is a major result of these impacts. Because of its complexity, the urban landscape is not adequately captured in air quality models such as the Community Multiscale Air Quality (CMAQ) model that is used to assess whether urban areas are in attainment of EPA air quality standards, primarily for ground level ozone. This inadequacy of the CMAQ model to sufficiently respond to the heterogeneous nature of the urban landscape can impact how well the model predicts ozone levels over metropolitan areas and ultimately, whether cities exceed EPA ozone air quality standards. We are exploring the utility of high-resolution remote sensing data and urban spatial growth modeling (SGM) projections as improved inputs to a meteorological/air quality modeling system focusing on the Atlanta, Georgia metropolitan area as a case study. These growth projections include business as usual and smart growth scenarios out to 2030. The growth projections illustrate the effects of employing urban heat island mitigation strategies, such as increasing tree canopy and albedo across the Atlanta metro area, which in turn, are used to model how air temperature can potentially be moderated as impacts on elevating ground-level ozone, as opposed to not utilizing heat island mitigation strategies. The National Land Cover Dataset at 30m resolution is being used as the land use/land cover input and aggregated to the 4km scale for the MM5 mesoscale meteorological model and the CMAQ modeling schemes. Use of these data has been found to better characterize low density/suburban development as compared with USGS lkm land use/land cover data that have traditionally been used in modeling. Air quality prediction for future scenarios to 2030 is being facilitated by land use projections using a spatial growth model. Land use projections were developed using the 2030 Regional Transportation Plan developed by the Atlanta Regional Commission, the regional planning agency for the area. This allows the Georgia Environmental Protection Division to evaluate how these transportation plans will affect future air quality. The coupled SGM and air quality modeling approach provides insight on what the impacts of Atlanta s growth will be on the local and regional environment and exists as a mechanism that can be used by policy makers to make rational decisions on urban growth and sustainability for the metropolitan area in the future.

Quattrochi, Dale A.↗

Titan Ion Composition at Magnetosphere-Ionosphere Transition Region

Using Cassini Plasma Spectrometer (CAPS) Ion Mass Spectrometer (IMS) ion composition data, we will investigate the compositional changes at the transition region between Saturn's magnetospheric flow and Titan's upper ionosphere. It is this region where scavenging of Titan's upper ionosphere can occur, where it is then dragged away by the magnetospheric flow as cold plasma for Saturn's magnetosphere. This cold plasma may form plumes as originally proposed by (1) during the Voyager 1 epoch. This source of cold plasma may have a unique compositional signature such as methane group ions. Water group ions that are observed in Saturn's outer magnetosphere (2,3) are relatively hot and probably come from the inner magnetosphere where they are born from fast neutrals escaping Enceladus (4) and picked up in the outer magnetosphere as hot plasma (5). This scenario will be complicated by pickup methane ions within Titan's mass loading region, as originally predicted by (6) based on Voyager 1 data and observationally confirmed by (3,7) using CAPS IMS data. But, CH4(+) ions or their fragments can only be produced as pickup ions from Titan's exosphere which can extend beyond the transition region of concern here, while CH5(+) ions can be scavenged from Titan's ionosphere. We will investigate these possibilities.

Sittler, Edward C.↗

Polar Lunar Regions: Exploiting Natural and Augmented Thermal Environments

In polar regions of the Moon, some areas within craters are permanently shadowed from solar illumination and can reach temperatures of 100 K or less. These regions could serve as cold traps, capturing ice and other volatile compounds. These potential ice stores have many applications for lunar exploration. Within double-shaded craters, even colder regions exist, with temperatures never exceeding 50 K in many cases. Observed temperatures suggest that these regions could enable equivalent liquid nitrogen cryogenic functions. These permanently shaded polar craters also offer unprecedented high-vacuum cryogenic environments, which in their current state could support cryogenic applications. Besides ice stores, the unique conditions at the lunar poles harbor an environment that provides an opportunity to reduce the power, weight, and total mass that needs to be carried from the Earth to the Moon for lunar exploration and research. Reducing the heat flux of geothermal, black body radiation can have significant impacts on the achievable temperature. With a few manmade augmentations, permanently shaded craters located near the lunar poles achieve temperatures even lower than those that naturally exist. Our analysis reveals that lightweight thermal shielding within shaded craters could create an environment several Kelvin above absolute zero. The temperature ranges of both naturally shaded and thermally augmented craters could enable the long-term storage of most gases, low-temperature superconductors for large magnetic fields, devices and advanced high-speed computing instruments. Augmenting thermal conditions in these craters could then be used as a basis for the development of an advanced thermal management architecture that would support a wide variety of cryogenically based applications. Lunar exploration and habitation capabilities would significantly benefit if permanently shaded craters, augmented with thermal shielding, were used to facilitate the operation of near absolute zero instruments, including a wide variety of cryogenically based propulsion, energy, communication, sensing, and computing devices. The required burden of carrying massive life-supporting components from the Earth to the Moon for lunar exploration and research potentially could be reduced.

Ryan, Robert E.↗

Ionospheric E-Region Response to Solar-Geomagnetic Storms Observed by TIMED/SABER and Application to IRI Storm-Model Development

The large thermospheric infrared radiance enhancements observed from the TIMED/SABER experiment during recent solar storms provide an exciting opportunity to study the influence of solar-geomagnetic disturbances on the upper atmosphere and ionosphere. In particular, nighttime enhancements of 4.3 um emission, due to vibrational excitation and radiative emission by NO+, provide an excellent proxy to study and analyze the response of the ionospheric E-region to auroral electron dosing and storm-time enhancements to the E-region electron density. In this paper we give a status report of on-going work on model and data analysis methodologies of deriving NO+ 4.3 um volume emission rates, a proxy for the storm-time E-region response, and the approach for deriving an empirical storm-time correction to International Reference Ionosphere (IRI) E-region NO+ and electron densities.

Mertens, Christopher J.↗

Phase-locked laser array having a non-uniform spacing between lasing regions

A phase-locked semiconductor array wherein the lasing regions of the array are spaced an effective distance apart such that the modes of oscillation of the different lasing regions are phase-locked to one another. The center-to-center spacing between the lasing regions is non-uniform. This variation in spacing perturbs the preferred 180.degree. phase difference between adjacent lasing regions thereby providing an increased yield of arrays exhibiting a single-lobed, far-field radiation pattern.

Ackley, Donald E.↗

The Solar Wind and Geomagnetic Activity as a Function of Time Relative to Corotating Interaction Regions

Corotating interaction regions during the declining phase of the solar cycle are the cause of recurrent geomagnetic storms and are responsible for the generation of high fluxes of relativistic electrons. These regions are produced by the collision of a high-speed stream of solar wind with a slow-speed stream. The interface between the two streams is easily identified with plasma and field data from a solar wind monitor upstream of the Earth. The properties of the solar wind and interplanetary magnetic field are systematic functions of time relative to the stream interface. Consequently the coupling of the solar wind to the Earth's magnetosphere produces a predictable sequence of events. Because the streams persist for many solar rotations it should be possible to use terrestrial observations of past magnetic activity to predict future activity. Also the high-speed streams are produced by large unipolar magnetic regions on the Sun so that empirical models can be used to predict the velocity profile of a stream expected at the Earth. In either case knowledge of the statistical properties of the solar wind and geomagnetic activity as a function of time relative to a stream interface provides the basis for medium term forecasting of geomagnetic activity. In this report we use lists of stream interfaces identified in solar wind data during the years 1995 and 2004 to develop probability distribution functions for a variety of different variables as a function of time relative to the interface. The results are presented as temporal profiles of the quartiles of the cumulative probability distributions of these variables. We demonstrate that the storms produced by these interaction regions are generally very weak. Despite this the fluxes of relativistic electrons produced during those storms are the highest seen in the solar cycle. We attribute this to the specific sequence of events produced by the organization of the solar wind relative to the stream interfaces. We also show that there are large quantitative differences in various parameters between the two cycles.

McPherron, Robert L.↗

Cassini Observations of Saturn's Dawn-Magnetotail Region: Preliminary Results

Using Cassini thermal plasma, hot plasma and magnetic field observations for several intervals between the dawn meridian of Saturn's outer magnetosphere and Saturn's magnetotail region, we investigate the structure of the magnetotail, plasma and magnetic field properties within tail-like current sheet regions and ion flows within the dawn to magnetotail regions. We use Cassini Plasma Spectrometer (CAPS) Ion Mass Spectrometer (IMS) and Electron Plasma Spectrometer (ELS) observations and MIMI LEMMS ion and electron observations to characterize the plasma environment. LMS observations are used to measure plasma flow velocities from which one can infer rotation versus convective flows. IMS composition measurements are used to trace the, source of plasma from the inner magnetosphere (protons, H(2+) and water group ions) versus an external solar wind source (protons and He++ ions). A critical parameter for both models is the strength of the convection electric field with respect to the rotational electric field for the large scale magnetosphere. For example, are there significant return flows (i.e., negative radial velocities, V(sub R) < 0) and/or plasmoids (V(sub R) > 0) within the magnetotail region?

Sittler, Edward C.↗

New Geologic Map of the Argyre Region of Mars

The new generation of Mars orbital topographic and imaging data justifies a new mapping effort of the Argyre impact basin and surroundings (-30.0deg to -65.0deg lat., -20.0deg to -70.0deg long; Fig.1). Our primary objective is to produce a geologic map of the Argyre region at 1:5,000,000 scale in both digital and print formats. The map will detail the stratigraphic and crosscutting relations among rock materials and landforms. These include Argyre basin infill, impact crater rim materials and adjoining highland materials of Noachis Terra, valleys and elongated basins that are radial and concentric about the primary Argyre basin, faults, enigmatic ridges, lobate debris aprons, and valley networks. Such information will be useful to the planetary science community for constraining the regional geology, paleohydrology, and paleoclimate. This includes the assessment of: (a) whether the Argyre basin contained lakes [1], (b) the extent of reported flooding and glaciation, which includes ancient flows of volatiles into the impact basin [2-4], (c) existing interpretations of the origin of the narrow ridges located in the southeast part of the basin floor [2,5], and (d) the extent of Argyre-related tectonism and its influence on the surrounding regions. Whereas the geologic mapping investigation of Timothy Parker focuses on the Argyre floor materials at 1:1,000,000 (MTMs -50036, -50043, -55036, -55043; see Fig. 1 for approximate corners of the area), our regional geologic mapping investigation includes the Argyre basin floor and rim materials, the transition zone that straddles the Thaumasia plateau, which includes Argyre impact-related modification [6], and the southeast margin of the Thaumasia plateau using important new data sets (Fig. 1). Our mapping effort will incorporate the map information of Parker if it is made available during the project.

Dohm, J. M.↗

Cassini Observations of Saturn's Magnetotail Region: Preliminary Results

Using Cassini thermal plasma, hot plasma and magnetic field observations for several intervals between the dawn meridian of Saturn's outer magnetosphere and Saturn's magnetotail region, we investigate the structure of the magnetotail, plasma and magnetic field properties within tail-like current sheet regions and ion flows within the magnetotail regions. We use Cassini Plasma Spectrometer (CAPS) Ion Mass Spectrometer (IMS), Electron Plasma Spectrometer (ELS) observations, MIMI LEMMS ion and electron observations and Cassini magnetometer data (MAG) to characterize the plasma environment. IMS observations are used to measure plasma flow velocities from which one can infer rotation versus convective flows. IMS composition measurements are used to trace the source of plasma from the inner magnetosphere (protons, H2+ and water group ions) versus an external solar wind source (protons and ~ e +i+on s). A critical parameter for both models is the strength of the convection electric field with respect to the rotational electric field for the large scale magnetosphere. For example, are there significant return flows (i.e., negative radial velocities, VR < 0) and/or plasmoids (V(sub R) > 0) within the magnetotail region? Initial preliminary evidence of such out flows and return flows was presented by Sittler et al. This talk complements the more global analysis by McAndrews et al.

Sittler, E. C.↗

Data Assimilation and Regional Forecasts Using Atmospheric InfraRed Sounder (AIRS) Profiles

In data sparse regions, remotely-sensed observations can be used to improve analyses, which in turn should lead to better forecasts. One such source comes from the Atmospheric Infrared Sounder (AIRS), which together with the Advanced Microwave Sounding Unit (AMSU), provides temperature and moisture profiles with an accuracy comparable to that of radiosondes. The purpose of this paper is to describe a procedure to optimally assimilate AIRS thermodynamic profiles--obtained from the version 5.0 Earth Observing System (EOS) science team retrieval algorithm-into a regional configuration of the Weather Research and Forecasting (WRF) model using WRF-Var. The paper focuses on development of background error covariances for the regional domain and background field type, a methodology for ingesting AIRS profiles as separate over-land and over-water retrievals with different error characteristics, and utilization of level-by-level quality indicators to select only the highest quality data. The assessment of the impact of the AIRS profiles on WRF-Var analyses will focus on intelligent use of the quality indicators, optimized tuning of the WRF-Var, and comparison of analysis soundings to radiosondes. The analyses will be used to conduct a month-long series of regional forecasts over the continental U.S. The long-tern1 impact of AIRS profiles on forecast will be assessed against verifying radiosonde and stage IV precipitation data.

Chou, Shih-Hung↗