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At least 721 records · Page 40

A semi-automated algorithm for designing stellarator divertor and limiter plates and application to HSX

We present a semi-automated algorithm for designing three-dimensional divertor or limiter plates targeting low heat loads. The algorithm designs the plates in two stages: firstly, the parallel heat flux distribution is caught on vertically-inclined plates at one or several toroidal locations. Secondly, the power per unit area is reduced by stretching, tilting and bending the plates toroidally. Heat transport is modelled using the EMC3-Lite code, which uses an anisotropic diffusion model. We apply this scheme to HSX, a medium-sized stellarator located at the University of Wisconsin–Madison. Starting from the current machine with an extended vessel wall, we construct plates which are able to effectively catch and spread the heat for three different magnetic configurations. The scheme has a computational cost in the order of tens of CPU-minutes, making it a powerful tool for semi-automated plasma-facing component design in three-dimensional environments.

anisotropic diffusion↗

SOLEDGE3X full vessel plasma boundary simulations of ITER non-active phase plasmas

The onset of detachment in the ITER machine is analyzed in this work through the help of 2D-axisymmetric boundary plasma simulations with the SOLEDGE3X-EIRENE code, which features a numerical domain for the plasma solver extending up to the first wall. The plasma boundary is computed in scenarios from the first non-active phase of ITER, in pure H and at 20 MW. This set of simulations is used in two aspects: first, to study the plasma detachment in the divertor, and second, the plasma conditions, fluxes, and beryllium erosion at the first wall. Here, the code results are also compared to those obtained with the well-established SOLPS-ITER code, which includes a plasma numerical domain only covering the main SOL. Results show an increase in the SOL width λ q with increasing density, and a detailed analysis is carried out, for the first time, on each of the different plasma-neutral interactions in the code’s physics model in EIRENE. The gross beryllium erosion rates of first wall panels are estimated from 2D simulations, with the aim of assessing their sensitivity to two parameters: the divertor density regime, and the presence of density shoulders in the far-SOL formed by enhanced perpendicular transport at this location. The erosion contributions from neutrals and ions are considered in each case, and the charge-exchange atoms fluxes and energy distributions are provided, highlighting the two atom populations (cold and charge-exchange).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Physical effects on compact high-velocity clouds in the circumgalactic medium

ABSTRACT We numerically investigate the evolution of compact high-velocity clouds (CHVCs) passing through a hot, tenuous gas representing the highly ionized circumgalactic medium (CGM) by applying the adaptive-mesh refinement code flash. The model clouds start from both hydrostatic and thermal equilibrium and are in pressure balance with the CGM. Here, we present 14 models, divided into two mass categories and two metallicities each and different velocities. We allow for self-gravity and thermal conduction or not. All models experience mass diffusion, radiative cooling, and external heating leading to dissociation and ionization. Our main findings are (1) self-gravity stabilizes clouds against Rayleigh–Taylor instability, which is disrupted within 10 sound-crossing times without; (2) clouds can develop Jeans-instable regions internally even though they are initially below Jeans mass; (3) all clouds lose mass by ram pressure and Kelvin–Helmholtz instability; (4) thermal conduction substantially lowers mass-loss rates, by this, extending the clouds’ lifetimes, particularly, more than doubling the lifetime of low-mass clouds; (5) thermal conduction leads to continuous, filamentary stripping, while the removed gas is heated up quickly and mixes efficiently with the ambient CGM; (6) without thermal conduction the removed gas consists of dense, cool, clumpy fragments; (7) thermal conduction might prevent CHVCs from forming stars; and (8) clouds decelerated by means of drag from the ambient CGM form head-tail shapes and collapse after they reach velocities characteristic for intermediate-velocity clouds. Conclusively, only sophisticated modelling of CHVCs as non-homogeneous and non-isothermal clouds with thermal conduction and self-gravity explains observed morphologies and naturally leads to the suppression of star formation.

Sander, Bastian↗

The effect of saturated thermal conduction on clouds in a hot plasma

We numerically investigate the internal evolution of multiphase clouds, which are at rest with respect to an ambient, highly ionized medium (HIM) representing the hot component of the circumgalactic medium. Time-dependent saturated thermal conduction and its implications like condensation rates and mixing efficiency are assessed in multiphase clouds. Our simulations are carried out by using the adaptive mesh refinement code FLASH. The model clouds are initially in both hydrostatic and thermal equilibrium and are in pressure balance with the HIM. Thus, they have steep gradients in both temperature and density at the interface to HIM leading to non-negligible thermal conduction. Several physical processes are considered numerically or semi-analytically: thermal conduction, radiative cooling and external heating of gas, self-gravity, mass diffusion, and dissociation of molecules and ionization of atoms. It turns out that saturated thermal conduction triggers a continuous condensation irrespective of cloud mass. Dynamical interactions with ambient HIM all relate to the radial density gradient in the clouds: (1) mass flux due to condensation is the higher the more homogeneous the clouds are; (2) mixing of condensed gas with cloud gas is easier in low-mass clouds, because of their shallower radial density gradient; and thus (3) accreted gas is distributed more efficiently. A distinct and sub-structured transition zone forms at the interface between cloud and HIM, which starts at smaller radii and is much narrower as deduced from analytical theory.

79 ASTRONOMY AND ASTROPHYSICS↗

Clumpy structures within the turbulent primordial cloud

ABSTRACT The primordial clouds in the mini-haloes hatch the first generation stars of the Universe, which play a crucial role in cosmic evolution. In this paper, we investigate how turbulence impacts the structure of primordial star-forming clouds. Previous cosmological simulations of the first star formation predicted a typical mass of around $\mathrm{ 100 \, M_\odot }$. This conflicts with recent observations of extremely metal-poor stars, suggesting a lower mass scale of about $\mathrm{25 \, M_\odot }$. The discrepancy may arise from unresolved turbulence in the star-forming cloud, driven by primordial gas accretion during mini-halo formation in the previous simulations. To quantitatively examine the turbulence effect on the primordial cloud formation, we employ the adaptive mesh refinement code Enzo to model the gas cloud with primordial composition, including artificially driven turbulence on the cloud scale and relevant gas physics. This artificially driven turbulence utilizes a stochastic forcing model to mimic the unresolved turbulence inside mini-haloes. Our results show that the turbulence with high Mach number and compressional mode effectively fragments the cloud into several clumps, each with dense cores of $\mathrm{22.7 - 174.9 \, M_\odot }$ that undergo Jeans instability to form stars. Fragmentation caused by intense and compressive turbulence prevents a runaway collapse of the cloud. The self-bound clumps with smaller masses in the turbulent primordial clouds suggest a possible pathway to decrease the theoretical mass scale of the first stars, further reconciling the mass discrepancy between simulations and observations.

Astronomy & Astrophysics↗

Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing

Abstract The microbiome is a complex community of microorganisms, encompassing prokaryotic (bacterial and archaeal), eukaryotic, and viral entities. This microbial ensemble plays a pivotal role in influencing the health and productivity of diverse ecosystems while shaping the web of life. However, many software suites developed to study microbiomes analyze only the prokaryotic community and provide limited to no support for viruses and microeukaryotes. Previously, we introduced the Viral Eukaryotic Bacterial Archaeal (VEBA) open-source software suite to address this critical gap in microbiome research by extending genome-resolved analysis beyond prokaryotes to encompass the understudied realms of eukaryotes and viruses. Here we present VEBA 2.0 with key updates including a comprehensive clustered microeukaryotic protein database, rapid genome/protein-level clustering, bioprospecting, non-coding/organelle gene modeling, genome-resolved taxonomic/pathway profiling, long-read support, and containerization. We demonstrate VEBA’s versatile application through the analysis of diverse case studies including marine water, Siberian permafrost, and white-tailed deer lung tissues with the latter showcasing how to identify integrated viruses. VEBA represents a crucial advancement in microbiome research, offering a powerful and accessible software suite that bridges the gap between genomics and biotechnological solutions.

59 BASIC BIOLOGICAL SCIENCES↗

Neutron-Neutron Correlations in the Photofission of 238U

Background: In the fission of actinides, the nearly back-to-back motion of the fission fragments has a strong effect on the kinematics of fission neutrons. This leads to a favoring of opening angles near 0? and 180? in the neutron-neutron (n-n) opening angle distributions of correlated neutron pairs from the same fission event. Purpose: To measure the n-n opening angle and energy correlations in the photofission of 238U. As of this writing, measurements of correlated n-n opening angle distributions have been reported only for the spontaneous and neutron-induced fission of actinides. This work is the first to report such a measurement using photofission and will provide useful experimental input for photofission models used in codes such as MCNP and FREYA. Method: Fission is induced using bremsstrahlung photons produced via a low duty factor, pulsed, linear electron accelerator. The bremsstrahlung photon beam impinges upon a 238U target that is surrounded by a large neutron scintillation detection system capable of measuring particle position and time of flight, from which n-n opening angle and energy are measured. Neutron-neutron angular correlations are determined by taking the ratio between a correlated neutron distribution and an uncorrelated neutron distribution formed by the pairing of neutrons produced during different beam pulses. This analysis technique greatly diminishes effects due to detector efficiencies, acceptance, and experimental drifts. Results: The angular correlation of neutrons from the photofission of 238U shows a high dependence on neutron energy as well as a dependence on the angle of the emitted neutrons with respect to the incoming photon beam. Angular correlations were also measured using neutrons from the spontaneous fission of 252Cf, showing good agreement with past measurements. Conclusions: The measured angular correlations reflect the underlying back-to-back nature of the fission fragments. An anomalous decline in n-n yield was observed for opening angles near 180? for 238U.

Burggraf, Jeff↗

Production of neutron-rich isotopes for 𝑍 ≥ 98 in the 238 U + 248 Cm reaction

Multinucleon transfer (MNT) reactions in actinide systems are a promising method to synthesize transuranium neutron-rich elements. Appropriate theoretical approaches are needed to understand the mechanisms behind MNT. We employ a microscopic approach to calculate neutron-rich isotope production in the reaction 238 U + 248 Cm system. Here, the stochastic mean-field (SMF) approach is used to calculate the primary cross sections in MNT reactions based on the quasifission and inverse quasifission processes, and a statistical de-excitation model with GEMINI ++ code to calculate the secondary fragment cross sections. The calculated cross sections using SMF and GEMINI ++ explain available experimental results for the 238 U + 248 Cm system at 𝐸 c.m. = 898.7 MeV energy. This shows the effectiveness and applicability of the quantal diffusion approach, based on the SMF theory, in heavy-ion collisions. Production of transuranium neutron-rich elements with a proton number up to 𝑍=101 is obtained with sizable cross sections. Theoretical results calculated for the 𝑍=102–105 region, for which there are no experimental data, show that the cross-section values would be lower than the microbarn level. SMF theory does not contain any adjustable parameters other than the standard parameters of the energy density functional used in the TDHF theory and is an important approach for the microscopic understanding of reaction mechanisms.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Spin Hall effect of radiofrequency waves in magnetized plasmas

In inhomogeneous media, electromagnetic-wave rays deviate from the trajectories predicted by the leading-order geometrical optics. This effect, called the spin Hall effect of light, is typically neglected in ray-tracing codes used for modeling waves in plasmas. Here, we demonstrate that the spin Hall effect can be significant for radiofrequency waves in toroidal magnetized plasmas whose parameters are in the ballpark of those used in fusion experiments. For example, an electron-cyclotron wave beam can deviate by as large as 10 wavelengths (~ 0.1 m) relative to the lowest-order ray trajectory in the poloidal direction. Finally, we calculate this displacement using gauge-invariant ray equations of extended geometrical optics, and we also compare our theoretical predictions with full-wave simulations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Cyber-Physical Power Systems Protection: The Byzantine Cybersecurity Framework

Cybersecurity of smart grids have been topic of much interest in recent years. As this critical infrastructure operation increases dependency on automated processes and controls, exposure to cyber-physical threats become inevitable. Considering cyber-physical security of the grid, much focus of attention has been made towards smart grids real-time monitoring solutions, including the state estimation process. Analyzing the relevant literature, one can note though that seldom research has been done on cyber-physical security of smart grids protection systems. Protection systems have intangible value towards grid reliability. This paper presents a cybersecurity framework for smart grids protection systems. A physics-based inspired machine learning solution is at the core process of the framework. Processed relay inputs and outputs are used by a deep predictive coding network. Formal models, a quasi-static state estimator, provides an oracle when low confidence decision is reached. Evolving knowledge is derived through reinforcement learning. Implementation aspects considering the Pacific Northwest National Laboratory Electricity Infrastructure Operations Center are presented. Built as an extra control layer to protection systems, without hard-to-derive parameters, highlights potential aspects towards real-life applications.

Bretas, Arturo Suman↗

Medium-Scale Methanol Pool Fire Model Validation

In this work, medium scale (30 cm diameter) methanol pool fires were simulated using the latest fire modeling suite implemented in Sierra/Fuego, a low Mach number multiphysics reacting flow code. The sensitivity of model outputs to various model parameters was studied with the objective of providing model validation. This work also assesses model performance relative to other recently published large eddy simulations (LES) of the same validation case. Two pool surface boundary conditions were simulated. The first was a prescribed fuel mass flux and the second used an algorithm to predict mass flux based on a mass and energy balance at the fuel surface. Gray gas radiation model parameters (absorption coefficients and gas radiation sources) were varied to assess radiant heat losses to the surroundings and pool surface. The radiation model was calibrated by comparing the simulated radiant fraction of the plume to experimental data. The effects of mesh resolution were also quantified starting with a grid resolution representative of engineering type fire calculations and then uniformly refining that mesh in the plume region. Simulation data were compared to experimental data collected at the University of Waterloo and the National Institute of Standards and Technology (NIST). Validation data included plume temperature, radial and axial velocities, velocity temperature turbulent correlations, velocity velocity turbulent correlations, radiant and convective heat fluxes to the pool surface, and plume radiant fraction. Additional analyses were performed in the pool boundary layer to assess simulated flame anchoring and the effect on convective heat fluxes. This work assesses the capability of the latest Fuego physics and chemistry model suite and provides additional insight into pool fire modeling for nonluminous, non-sooting flames.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

lanl/nubhlight

nubhlight is a code for simulating disks of materials around black holes formed after the in-spiral and merger of two-black holes. It is based on the open-source code bhlight. nubhlight models all relevant physics required to solve the post-merger disk problem. This includes: general relativity in a static spacetime, neutrino and weak physics, relativistic magnetohydrodynamics, and the ability to use open-sourced tabulated equations of state provided by stellarcollapse.org.

Miller, Jonah↗

Seismic H2: Version 1.0

Seismic-H2 is an integrated software package for geological hydrogen reservoir simulation, optimization, and leakage monitoring. The package includes multiple components: (1) code used for modeling seismic wave propagation in 3D heterogeneous elastic media based on finite-difference method to support detection of geological hydrogen storage reservoir leakage; (2) 3D reservoir simulations of leaks from an underground reservoir and 3D simulations of saline aquifers and depleted gas reservoirs; (3) seismic monitoring costs of passive and active seismic monitoring required for UHS; (4) rock physics calculations and interpolations for converting the reservoir simulations from part (2) into the elastic media models in part (1); (5) pre-processing seismic data; and lastly (6), a GUI interface that combines these different components.

Creasy, Neala↗

HALLUFIELD: DETECTING LLM HALLUCINATIONS VIA FIELD-THEORETIC MODELING

A research-focused Python package that implements our hallucination-detection method for large language models(LLMs). The code computes stability signals from LLM predictions across various hyperparameters sweeps and combines free-energy/entropy–style metrics to flag likely hallucinations, with tunable thresholds for batch scoring. The repo includes evaluation scripts, config files, and example notebooks to reproduce benchmark results and ablations; it depends on standard open-source libraries (PyTorch, Hugging Face) and runs on CPU/GPU. The repository examples only use public models/datasets only.

Bhattarai, Manish [Los Alamos National Labs]↗

wa-hls4ml-paper

Code for plots, models, data generation and other utilities relating to the paper "wa-hls4ml: A Benchmark and Surrogate Models for hls4ml Resource and Latency Estimation" https://arxiv.org/abs/2511.05615 [FERMILAB-PUB-25-0359-CSAID]

Hawks, Ben [Fermi National Accelerator Laboratory ↗

Diffraction properties of cylindrically bent KAP crystals in energy range of 2.3–7.5 keV using synchrotron radiation

Verification of physics models and computer simulations are heavily reliant upon the accuracy of experimental measurements. Calibration of instrument responses becomes an important step to achieve this goal. This paper presents systematic studies of bent potassium acid phthalate (KAP) crystals using Lawrence Berkeley National Laboratories, Advanced Light Source, beamline 9.3.1 in the energy range of 2.3 to 7.5 keV. A set of KAP crystals, gradually bent from flat up to a 50.8 mm cylindrical curvature. The measured integrated reflectivity for this set of KAP crystals shows good agreement with the X-ray Oriented Program (XOP) calculations when adjusting the Debye–Waller temperature factor and using the multilamellar model in the calculations. Significant differences in rocking curve profiles were observed between experimental measurements and theory. A forward convolution model and software code were developed to include experimental parameters, allowing the investigation of the difference between measurements and calculations. After considering the experimental parameters, good agreements were obtained for the rocking curve profiles for all bending radii with a unique set of parameters. Our results show that XOP can be a useful and reliable tool to predict performance of cylindrically bent KAP crystals in this energy range.

Wu, Ming↗

Adorym: a multi-platform generic X-ray image reconstruction framework based on automatic differentiation

We describe and demonstrate an optimization-based X-ray image reconstruction framework called Adorym. Our framework provides a generic forward model, allowing one code framework to be used for a wide range of imaging methods ranging from near-field holography to fly-scan ptychographic tomography. By using automatic differentiation for optimization, Adorym has the flexibility to refine experimental parameters including probe positions, multiple hologram alignment, and object tilts. It is written with strong support for parallel processing, allowing large datasets to be processed on high-performance computing systems. We demonstrate its use on several experimental datasets to show improved image quality through parameter refinement.

36 MATERIALS SCIENCE↗

Soil Water Potentials (1990-2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama

This dataset has ELM-FATES simulation outputs and scripts that accompany and reproduce the manuscript, Chitra-Tarak et al. (2021) Hydraulically-vulnerable trees survive on deep-water access during droughts in a tropical forest. New Phytologist. https: //doi.org/10.1111/nph.17464”. This dataset is organized into four parts: (1) source code for the model, Energy Exascale Earth System Land Model-Functionally Assembled Advanced Terrestrial simulator (ELM-FATES) (2) R scripts associated with ELM-FATES simulations: to prepare files for parameter ensemble simulation runs, calibrate the model with observed hydrological fluxes observed at BCI, re-run the model with tuned parameters and obtain long-term soil matric potentials by depth (3) ELM-FATES hydrological simulation outputs at PA-BCI, Panama (1990-2018, daily), and (4) R scripts for inverse rooting depth modeling and post-processing: prepare datasets and inversely model tree rooting depths at BCI, test hypotheses about the relationship of rooting depths with plant hydraulic traits and drought-induced mortality, and reproduce the manuscript itself. n.b. 1. Data needed to run R scripts in (2) and (4) and thus to reproduce the manuscript are sourced from various public datasets. Refer to the data availability section of the accompanying manuscript. 2. This dataset version (prepared on May 12, 2021) matches the revised and published version of the accompanying manuscript (published May 16, 2021) replacing a previous version. In the publication, this dataset is cited as follows: Chitra-Tarak R, Xu C, Aguilar S, Anderson-Teixeira K, Chambers J, Detto M, Faybishenko B, Fisher R, Knox R, Koven C et al. 2020. Soil water potentials (1990–2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama. 2.0. NGEE Tropics Data Collection. doi: 10.15486/ngt/1696806

54 ENVIRONMENTAL SCIENCES↗