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At least 721 records · Page 40

Poxvirus infection triggers remodeling of host m⁶A epitranscriptome and benefits from the m⁶A regulatory responses

Understanding how host gene regulation responds to viral infection is essential for developing effective antiviral strategies. Emerging evidence suggests that host transcripts undergo dynamic chemical modifications to counteract viral invasion. Conversely, viruses that rely on nuclear transcription exploit host RNA methyltransferases to enhance mRNA export and translation. Orthopoxviruses, however, complete their entire replication cycle within compartmentalized cytoplasmic “factories” utilizing enzymes encoded by their large double-stranded viral DNA genomes. The dynamic interplay between host and poxviral epitranscriptome remains poorly characterized. Using a temporally resolved model of Vaccinia virus (VV) infection, we investigated host-virus interactions through transcriptome and N6-methyladenosine (m⁶A) epitranscriptome whole genome sequencing. We found that host m⁶A modifications respond rapidly to VV infection, preceding the delayed transcriptional changes that emerge at later stages. Early m⁶A signatures included key innate immunity factors as well as host genes involved in transcriptional regulation, post-transcriptional modification, and protein ubiquitination. Functional assays validated two host factors with early m⁶A modification changes that are essential for VV infection: a m⁶A reader, YTHDF1, and a component of the SCF E3 ubiquitin ligase complex, FBXO31. The m⁶A gain on YTHDF1 enhanced its protein expression and promoted efficient VV replication. In addition, we identified previously unrecognized roles of FBXO31 and the SCF E3 ligase complex in supporting VV infection. Temporal profiling of the m⁶A epitranscriptome reveals how VV exploits host post-transcriptional regulatory pathways, specifically m⁶A RNA modification and protein ubiquitination. These findings highlight critical host factors co-opted during poxvirus infection and identify potential targets for therapeutic intervention.

59 BASIC BIOLOGICAL SCIENCES↗

Improving Dose-Optimization Processes Used in Oncology Drug Development to Minimize Toxicity and Maximize Benefit to Patients

This review highlights strategies to integrate dose optimization into premarketing drug development and discusses the underlying statistical principles. Poor dose optimization can have negative consequences for patients, most commonly because of toxicity, including poor quality of life, reduced effectiveness because of inability of patients to stay on current therapy or receive subsequent therapy because of toxicities, and difficulty in developing combination regimens. We reviewed US Food and Drug Administration initial approvals (2019-2021) of small molecules and antibody-drug conjugates for oncologic indications to determine the proportion with a recommended dosage at the maximum tolerated dose or the maximal administered dose, to characterize the use of randomized evaluations of multiple dosages in dose selection, to describe the frequency of dose modifications at the recommended dosage, and to identify case examples that highlight key principles for premarket dose optimization during drug development. Herein, we highlight major principles for dose optimization and review examples of recent US Food and Drug Administration approvals that illustrate how investigation of dose- and exposure-response relationships and use of randomized dose trials can support dose optimization. Although there has been some progress, dose optimization through randomized dose evaluation in oncology trials is not routinely conducted. Dose optimization is essential to ensure that patients receive therapies which maximize efficacy while minimizing toxicity.

Oncology↗

Data for "Field-scale Evaluation of Ecosystem Service Benefits of Bioenergy Switchgrass"

Purpose-grown perennial herbaceous species are nonfood crops specifically cultivated for bioenergy production and have the potential to secure bioenergy feedstock resources while enhancing ecosystem services. This study assessed soil greenhouse gas emissions (CO2 and N2O), nitrate (NO3-N) leaching reduction potential, evapotranspiration (ET), and water-use efficiency (WUE) of bioenergy switchgrass ( Panicum virgatum L.) in comparison to corn ( Zea mays L.). The study was conducted on field-scale plots in Urbana, IL, during the 2020–2022 growing seasons. Switchgrass was established in 2020 and urea-fertilized at 56 kg N ha−1 year−1. Corn management followed best management practices for the US Midwest, including no-till and 202 kg N ha−1 year−1 fertilization, applied as urea–ammonium nitrate (32%). Our results showed lower direct N2O emissions in switchgrass compared to corn. Although soil CO2 emissions did not differ significantly during the establishment year, emissions in subsequent years were over 50% higher in switchgrass than in corn, likely due to increased belowground biomass, which was over five times higher in switchgrass. Nitrate-N leaching decreased as the switchgrass stand matured, reaching 80% lower than in corn by the third year. Differences in ET and WUE between corn and switchgrass were not significant; however, results indicate a trend toward reduced WUE in switchgrass under drought, driven by lower aboveground biomass production. Our study demonstrates that switchgrass can be implemented at a commercial scale without negatively impacting the hydrological cycle, while potentially reducing N losses through nitrate-N leaching and soil N2O emissions, and enhancing belowground C storage.

field data↗

BEPAM code and results for the publication 'Supplementing Biofuel Mandates with a Carbon Mitigation Policy Can Lead to Water Quality Co-benefits'

The dataset consists of: (1) The replication codes and data for the BEPAM model are contained in the "BEPAM_Supplementary Environment Policy Analysis.zip" (2) Simulation results from the BEPAM model are contained in "ModelOutputs.zip" under the "BEPAM_Supplementary Environment Policy Analysis.zip"

Fan, Xinxin [Center for Advanced Bioenergy and Bio↗

In-Rod Sensor System Overview, Benefits and Recent Irradiation Test Results

Westinghouse is developing an In-Rod Sensor (IRS) System capable of measuring critical fuel rod parameters such as center-line fuel temperature, rod internal pressure and axial fuel pellet stack elongation without having penetrations to the fuel rod. The technology is similar to the Halden Reactor instrumentation, but the IRS system focuses on commercial fuel rod instrumentation. Both systems circumvent fuel rod penetrations, however the IRS system overcomes unique geometric challenges found in commercial fuel rod assemblies. The IRS could also play a key role in accelerated fuel qualification by allowing real-time measurements during separate effects tests, integral fuel testing or during irradiation of lead test rods or lead test assemblies. Combining these measurements with data acquired from targeted separate effects testing and multi-scale modelling could significantly reduce the time required to qualify new fuel and reduce the safety margin uncertainty of operating plants. The IRS is actively in development for Light Water Reactors (LWR) based fuel assemblies but can also be applied to Gen IV reactor designs with minimal modifications.

Carvajal, Jorge↗

Exploring the benefits of using co-packaged optics in data center and AI supercomputer networks: a simulation-based analysis [Invited]

We investigate the advantages of using co-packaged optics in next-generation data center and AI supercomputer networks. The increased escape bandwidth offered by co-packaged optics provides multiple possibilities for building 50T switches and beyond, expanding the opportunities in both the data center and supercomputing domains. Furthermore, this provides network architects with the opportunity to expand their design space and develop simplified networks with enhanced network locality properties. Co-packaging at the switch and server points enables networks with double capacity while reducing the switch count by 64% compared to state-of-the-art systems. We evaluate these concepts through discrete-event simulations using all-to-all and all-reduce traffic patterns that simulate collective communications commonly found in network-bound applications. Initially, we investigate the all-to-all overhead involved in distributing the virtual machines of the applications across multiple leaf switches and compare it to the scenario in which all VMs are placed under a single switch. Subsequently, we evaluate the performance of an AI supercomputing cluster by simulating both patterns for different message sizes, while also varying the number of participating nodes. The results suggest that networks with improved locality properties become increasingly important as the network stack operates at higher speeds; for a stack latency of 1.25 µs, placing the applications under multiple switches can result in up to 68% higher completion times than placing them under a single switch. For AI supercomputers, significant improvements are observed in the mean server throughput, reaching more than 90% for configurations involving 256 nodes and message sizes of at least 128 KiB.

99 GENERAL AND MISCELLANEOUS↗

Ultrasonic deterrents provide no additional benefit over curtailment in reducing bat fatalities at an Ohio wind energy facility

Wind energy is important for achieving net-zero greenhouse gas emissions but also contributes to global bat mortality. Current strategies to minimize bat mortality due to collision with wind-turbine blades fall broadly into two categories: curtailment (limiting turbine operation during high-risk periods) and deterrence (discouraging bat activity near turbines). Recently, there has been interest in combining these strategies to achieve greater reductions in bat fatalities than either strategy might achieve in isolation. To investigate the effectiveness of combining curtailment with ultrasonic deterrent minimization strategies, we deployed six ultrasonic deterrents at nacelle height on 16 experimental turbines at Avangrid Renewables’ Blue Creek Wind Energy Facility. We rotated between four conditions (normal operations, curtailment only, deterrent only, curtailment and deterrent) randomly assigned to four wind turbines each night between 15 June and 3 October 2017. We found that bat mortality at wind turbines was independent of wind speed. The effectiveness of ultrasonic acoustic deterrents varied between high-frequency-calling species (eastern red bats) and low-frequency-calling species (hoary bats, silver-haired bats, and big brown bats). When deterrents were active, mortality was twice as high for eastern red bats compared to the control. Conversely, deterrents had a weak dampening effect on bat mortality for low-frequency species. We found no additive effects on mortality reduction for turbines operating both curtailment and deterrents compared to either approach in isolation. Our findings suggest that ultrasonic acoustic deterrents may not be effective for both high and low frequency echolocating bats. The increase in fatalities of eastern red bats is alarming and underscores the importance of considering site- and species-specific effects of minimization solutions.

60 APPLIED LIFE SCIENCES↗

Detailed Simulation Datasets Quantifying U.S. DOE VTO/HFTO R&D Benefits Across Light- to Heavy-Duty Vehicles

For more than 20 years, Argonne National Laboratory’s Vehicle & Mobility Systems Department has assessed how R&D investments by the U.S. Department of Energy’s Transportation Technologies Office and Alternative Fuels and Feedstocks Office affect vehicle energy use and cost. The analyses are performed using Autonomie, Argonne’s full-vehicle simulation tool for energy consumption, performance, and cost. The study covers five time frames ranging from present day through 2050, with more than 30 vehicle classes and applications (10 light duty and >20 medium and heavy duty), as well as six powertrain configurations (conventional, start-stop, hybrid electric vehicle, plug-in hybrid electric vehicle, battery-electric vehicle, and fuel cell electric vehicle) and five fuels (gasoline, diesel, natural gas, hydrogen, and electricity). Low and high technology uncertainty scenarios have been considered to capture a realistic range of outcomes. The resulting datasets include the assumptions used (i.e., efficiency, $/kWh), vehicle-level data (power, energy, weight, and cost), and outputs such as energy consumption, manufacturer’s suggested retail price, and total cost of ownership. These data are critical to stakeholders working in transportation, technology assessment, and long-term R&D planning.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Model Data for the Mesh Convergence Study Demonstrating Benefits of Mixed-polyhedral Mesh in Integrated Hydrology Simulations

This archived model data is related to a study introducing a unique method that employs a stream-aligned mixed-polyhedral mesh to effectively and accurately represent river valleys, stream corridors, and narrow engineered channels in integrated hydrology simulations. The study finds that utilizing stream-aligned mixed-polyhedral meshes in integrated hydrology simulations achieves accuracy on par with a finely refined TIN-based mesh while markedly diminishing computational costs. This archive contains scripts and data files needed to generate the ATS model input, including mesh and ATS input files, for all mesh scenarios using the Watershed Workflow package. Additionally, this archive also provides key outputs from the model simulations that are used in the analysis and post-processing scripts to reproduce figures in the manuscript. The Watershed Workflow package is implemented in Python3. The Jupyter notebooks can be executed through multiple open-source tools, for example, Anaconda Jupyter Lab, VS Studio Code, etc. Other data files include CSV and HDF5 files, which can be read through Python scripts. The input files for the ATS model, open-source integrated hydrology, and transport model are in XML format and can be edited in any commonly used text editors.

54 ENVIRONMENTAL SCIENCES↗

Jamaican Domestic Ethanol Fuel Feasibility and Benefits Analysis

The Government of Jamaica asked the National Renewable Energy Laboratory (NREL) to determine if the use of domestically produced ethanol motor fuel could help them achieve their goals to develop its economy and to reduce greenhouse gas (GHG) emissions. The first step was to determine how much ethanol could be used by Jamaican vehicles in blends of 10% (E10 – current blend level), 15% (E15), or 25% (E25). All blend levels make for feasible automotive fuels and are being used or pursued in multiple countries. Building on gross domestic product (GDP)-related projections made by the Johnson et al. (2019) business as usual scenario, the quantity of ethanol to be used in future years and blend levels is shown in Table ES1. All blend levels are assumed to achieve the same volumetric fuel economy because of verified efficiency improvements enabled by increased octane levels.

09 BIOMASS FUELS↗

Wood-to-Fuel for California's Transportation Sector using Autothermal Pyrolysis: Kickoff Questionnaire for Benefits Analysis of CEC Projects

This is the first of three questionnaires that you will be asked to complete over the course of the agreement. Please type your responses directly into this document in the spaces below each question. Use as much space as you need; the form automatically creates more space within each response field. In addition, you may submit additional documents, spreadsheets, or other files. Acceptable filetypes are MS Word, MS Excel, and PDF. Additional files do not need to follow any particular format, unless specified by the particular questionnaire designed for your project.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Systematic Enterprise Risk Management by Integrating the RISMC Toolkit and Cost-Benefit Analysis (Final Report)

The goal of this research is to theorize and quantify the relationships between safety and the financial performance of nuclear power plants (NPPs). The Socio-Technical Risk Analysis (SoTeRiA) theoretical framework, which connects the social aspects (e.g., safety culture) and structural features (e.g., safety practices) of an organization with organizational safety and financial risks, is used to theorize the direct and indirect relationships between safety and the financial performance of NPPs. An Integrated Enterprise Risk Management (I-ERM) methodological framework is developed to operationalize SoTeRiA to quantify NPP safety and financial performance in a unified platform where their underlying physical degradation mechanisms, coupled with maintenance performance (considering human and organizational factors), are explicitly incorporated to depict the interconnections and dependencies between safety and financial performance. In this study, NPP safety refers to both occupational safety and system safety (estimated from Probabilistic Risk Assessment, PRA), and financial performance refers to the monetary values associated with NPP operation and maintenance (O&M) strategies. This report covers a case study demonstrating the feasibility of the I-ERM methodological framework. More detailed development of one of the I-ERM modules, i.e., Probabilistic Physics-of-Failure (PPoF) analysis, and its connection with other I-ERM modules is demonstrated in a second case study. The outcome of this research will help NPP decision-makers create cost-saving maintenance strategies while maintaining safety by providing cost- and risk-informed recommendations regarding maintenance work processes and operational strategies.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Modeling Capabilities to Quantify the Benefits of DERMS (Cooperative Research and Development Final Report)

The funds-in under the CRADA will fund a team of National Renewable Energy Laboratory (NREL) researchers to participate in Energy I-Corps (formerly known as Lab-Corps). Energy I-Corps pairs teams of researchers with industry mentors for an intensive two-month training where the researchers define technology value propositions, conduct customer discovery interviews, and develop viable market pathways for their technologies. FedIMPACT, LLC and its affiliate IP Group, Inc., will evaluate the work completed at Energy I-Corps to determine whether it would like to pursue further commercialization and development of related technologies and background intellectual property.

24 POWER TRANSMISSION AND DISTRIBUTION↗

An Ally in Your Corner: Benefits of Using Owner's Representatives

This short guide provides prospective ESPC customers with key considerations for retaining an owner's representative ("owner’s rep"), specifically regarding recommended areas of competency and qualifications. It also provides a summary of resources to help with finding or soliciting owner's rep services. This information may also be valuable for ESPC program administrators considering how to promote the use of owner’s reps for projects in their state.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Estimating Fresh Water Needs to Meet Future Thermoelectric Generation Requirements and Program Water Saving Benefits (2022 Update)

Freshwater availability is operationally critical for thermoelectric power plants. Trends indicating a growing population, along with increasing threats stemming from the changing climate could possibly set off water scarcity issues for U.S. thermoelectric generation in scarcity-prone regions in the country. This report is an update to a previous water needs analysis which was conducted in 2020 by the Department of Energy’s National Energy Technology Laboratory (DOE/NETL).

29 ENERGY PLANNING, POLICY, AND ECONOMY↗