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At least 721 records · Page 40

Washington State Highway Bridge Seismic Screening Tool (BSST) (Technical Report)

The Regional Resiliency Assessment Program (RRAP) is a cooperative assessment of specific critical infrastructure within a designated geographic area and a regional analysis of the surrounding infrastructure that addresses a range of infrastructure resilience issues that could have regionally and nationally significant consequences. In 2017, the U.S. Department of Homeland Security’s Cybersecurity and Infrastructure Security Agency (CISA) sponsored the Washington State Transportation Systems RRAP project in coordination with the Washington Emergency Management Division (EMD), Washington State Department of Transportation (WSDOT), and other regional stakeholders. This project is focused on assessing the impacts of a Cascadia Subduction Zone (CSZ) earthquake on state transportation systems and, in particular, how those impacts may affect the ability of emergency response efforts to move supplies into the region. The intended outcome of this analysis is the prioritization of transportation routes and modes for additional planning, investment, hardening, or other activities to enhance their resilience - and therefore, to enhance their ability to support response and recovery efforts following a CSZ earthquake. An important part of this transportation system-level assessment has been to assess the seismic vulnerability of the state highway system. In doing so, the RRAP project team developed a Bridge Seismic Screening Tool (BSST) to assess, at a system-level, the potential impacts that a CSZ earthquake could have on state highway bridges. The first step in the BSST is to assess the seismic vulnerability of highway bridge infrastructure in Washington State following a CSZ earthquake to determine a projected or potential damage state. Damage states are then used to determine approximate reopening times for bridge crossings.2 This document provides details on the methodological development of the BSST, the implementation of that tool to analyze the projected damage incurred in a CSZ earthquake scenario, and the determination of corresponding reopening times of interstate and state highway bridges following such an event. The BSST was implemented programmatically using a Microsoft Excel macro-enabled workbook; instructions on use of this tool are provided in the accompanying report, Washington State Highway Bridge Seismic Screening Tool (BSST) - User Manual.

42 ENGINEERING↗

Screening IMS Seismic Detections using Dynamic Correlation Processor: Progress report for 2020

LLNL completed the FY20 workplan entailing application of the Dynamic Correlation Processor (DCP) to International Monitoring System (IMS) primary seismic data in 2019 and 2020. The effective analysis period was curtailed to January 1 through November 12, 2019 due to a data compression change that rendered later data unusable. Fixing the data compression error is a priority for our data source, and we plan to extend the period of data analysis when the fix is implemented. We found that the percentage overlap between detections generated by the International Data Centre (IDC) DFX software and detections generated by DCP varied widely by station. Overlap is 30-40% at some stations, suggesting that a large percentage of DFX detections could be screened (removed) from the detection-event association algorithm. However, detection overlap was much lower, a few percent, at many stations and the percentage overlap was low at stations known to have many mines and other local sources of seismicity. Unexpectedly low detection overlap at many stations prompted us to examine results for the ARCES station in detail. There is considerable mine activity near ARCES, but our initial FY20 analysis found only ~2% DCP/DFX detection overlap. Differences in the pre-processing (e.g. beam recipes) used by DCP and DFX appear to be the cause of low detection overlap at ARCES. DCP uses wideband filters to improve detector robustness and the IDC uses narrow-band pre-filtering to improve sensitivity. After reprocessing ARCES using the IDC beam recipe, DCP/DFX overlap increased to ~74%. This result shows that we must reprocess the IMS network using the IDC station-specific beam recipes if we are to effectively screen DFX detections and improve automatic event building performance at the IDC.

58 GEOSCIENCES↗

DISCOVR: Development of Integrated Screening, Cultivar Optimization, and Verification Research

The DISCOVR consortium has developed and is applying an integrated platform and workflow for standardized, deep characterization of highly productive and resilient microalgae strains. New strains are screened using three consecutive tiers in a conceptual down-selection funnel to arrive at the most promising strains. At tier I, strains are screened on gradient incubators to determine their temperature and salinity tolerance range, and to evaluate their resistance to infectious agents (e.g., chytrids). At tier II, the strains’ winter and summer season biomass productivities are quantified in Laboratory Environmental Algae Pond Simulator (LEAPS) photobioreactors, and biomass composition is determined under N-replete and N-deplete conditions. At tier III, the best winter and summer season strains are evaluated in indoor crash ponds to determine their resilience to induced infections, and strains are tested in outdoor raceway ponds to confirm high biomass productivity and culture stability. The top strains are then evaluated in seasonal SOT outdoor pond culture trials at AzCATI, the dedicated Department of Energy SOT (State of Technology) testbed. Additional research is carried out on evaluating growth promoting molecules, reducing the impact of oxygen inhibition, optimizing pond operational conditions, measuring compositional shift dynamics, developing integrated pest management strategies, analysing culture health using 96 well-plate tools, implementing spectroradiometric monitoring and using machine learning to predict culture crashes.

Huesemann, Michael H↗

Super-Resolution Approaches in Three-Dimensions for Classification and Screening of Commercial-Off-The-Shelf Components

X-ray computed tomography is generally a primary step in characterization of defective electronic components, but is generally too slow to screen large lots of components. Super-resolution imaging approaches, in which higher-resolution data is inferred from lower-resolution images, have the potential to substantially reduce collection times for data volumes accessible via x-ray computed tomography. Here we seek to advance existing two-dimensional super-resolution approaches directly to three-dimensional computed tomography data. Multiple scan resolutions over a half order of magnitude of resolution were collected for four classes of commercial electronic components to serve as training data for a deep-learning, super-resolution network. A modular python framework for three-dimensional super-resolution of computed tomography data has been developed and trained over multiple classes of electronic components. Initial training and testing demonstrate the vast promise for these approaches, which have the potential for more than an order of magnitude reduction in collection time for electronic component screening.

47 OTHER INSTRUMENTATION↗

Quantifying the Impact of Excluding the Submersion Exposure Route for Existing Superfund Radionuclide Screening Level Calculator Soil and Tap Water Models

The U.S. Environmental Protection Agency (EPA) provides initial data screening guidelines for radionuclide-contaminated Superfund sites using preliminary remediation goals (PRGs) and dose compliance concentrations (DCCs). PRGs and DCCs are target concentration values based on acceptable excess lifetime cancer risk and annual dose limits, respectively. They are calculated for various environmental media that may be encountered by residential and worker land uses. PRGs and DCCs typically consist of multiple exposure routes. One of these routes is submersion, which is exposure to a gaseous or particulate radionuclide that is suspended in air. Currently, submersion is only included in air calculations. This study focused on determining whether factoring submersion into total PRG/DCC calculations for soil and tap water created a significant difference in the target concentrations. New equations for individual submersion PRGs/DCCs for each land use of interest for soil and tap water were developed. A wind-driven particulate emission factor and Andelman’s constant were used to model the amount of soil and vapor in the air from soil and household use of tap water, respectively. The submersion PRG/DCC was then included in the total PRG/DCC for each radionuclide, followed by a percent difference comparison of the old and new totals to quantify the impact of the change. For total soil PRGs/DCCs, with and without submersion, the difference was less than 1 percent; however, many of the tap water radionuclides analyzed – including multiple radon and polonium isotopes – showed as high as a 200 percent difference.This technical memorandum (TM) presents recommendations for updates to current EPA guidelines for initial data screens of radionuclide contaminated tap water.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Beam-induced heat deposited in the EIC HSR screens

The beam screens of the Electron-Ion Collider (EIC) Hadron Storage Ring (HSR) have several beam-induced heat sources: the resistive-wall impedance, the electron cloud, and beam particle losses. This note discusses the heat load to the HSR screens from resistive-wall impedance and beam particle losses for different beam scenarios.

43 PARTICLE ACCELERATORS↗

Screening Evaluation of Sovereign NOH2O

Southwest Research Institute (SwRI) was contracted by Sovereign Hydroseal Energy, Inc to provide evaluation of the NOH2O polymer grout technology as a feasible tank bottom repair in support of Washington River Protection Solutions, LLC (WRPS) Solicitation #358012 Statement of Work (SOW) “Screening Evaluation of Sovereign NOH2O”, which a copy is located in Appendix A. The evaluation focused on screening the mechanical properties of NOH2O under normal, chemical and radiological conditions, which was identified as Task 2 of the SOW. Testing was performed in accordance with the SwRI Test Plan located in Appendix B.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Technical and Economic Screening for Potential of Distributed Energy Resource Integration at Chervonohrad Water Utility in Ukraine

In this report, the authors present a preliminary techno-economic screening for distributed renewable energy for Chervonohrad Vodokanal, the water utility in Chervonohrad, Ukraine. The screening estimates the technical potential and economics of integrating solar photovoltaics (PV) and battery energy storage systems (BESS) at Chervonohrad Vodokanal water pumping stations, Pravda, Bendiuha, and Mezhyrichchya. For the Ukrainian version of this report, see NREL/TP-7A40-90360 (https://www.nrel.gov/docs/fy24osti/90360.pdf).

14 SOLAR ENERGY↗

ТЕХНІКО-ЕКОНОМІЧНИЙ АНАЛІЗ ПОТЕНЦІАЛУ ІНТЕГРАЦІЇ РОЗПОДІЛЕНИХ ЕНЕРГЕТИЧНИХ РЕСУРСІВ ДЛЯ ВОДОКАНАЛУ М.ЧЕРВОНОГРАД В УКРАЇНІ [Technical and Economic Screening for Potential of Distributed Energy Resource Integration at Chervonohrad Water Utility in Ukraine] (Ukrainian Translation)

In this report, the authors present a preliminary techno-economic screening for distributed renewable energy for Chervonohrad Vodokanal, the water utility in Chervonohrad, Ukraine. The screening estimates the technical potential and economics of integrating solar photovoltaics (PV) and battery energy storage systems (BESS) at Chervonohrad Vodokanal water pumping stations, Pravda, Bendiuha, and Mezhyrichchya. For the English version of this report, see NREL/TP-7A40-89599 (https://www.nrel.gov/docs/fy24osti/89599.pdf).

14 SOLAR ENERGY↗

Beam-Impedance Considerations for the EIC HSR Screen

The hadron storage ring (HSR) of the Electron-Ion Collider (EIC) will use the superconducting magnets from the Relativistic Heavy Ion Collider (RHIC). However, the beam pipes of these magnets show too large resistive-wall impedance and secondary electron yield to the HSR beams. The planned solution is to install beam screens that feature a thin film of amorphous carbon with low SEY on top of a high RRR copper layer for reduced impedance. This note discusses beam-impedance considerations that impact the EIC HSR beam screen design.

43 PARTICLE ACCELERATORS↗

Preliminary Screening of Features, Events, and Processes for an Arctic-Focused Climate Intervention Performance Assessment

Geoengineering, the deliberate large-scale intervention in Earth's climate system, holds significant potential in the rapidly warming Arctic, where temperatures currently rise at more than twice the global average, accelerating ice sheet and permafrost melt. This contributes to global sea-level rise and releases methane, a potent greenhouse gas. Strategies like solar radiation management (SRM) and carbon dioxide removal (CDR) could mitigate these effects; for instance, SRM techniques aim to reflect a portion of the sun's energy back into space, potentially slowing ice melt and stabilizing permafrost. However, geoengineering in the Arctic faces challenges, including potential unintended consequences on the fragile ecosystem, disruption of local weather patterns, and impacts on indigenous communities. Effective governance requires robust international cooperation, environmental impact assessments, and regulatory frameworks. Despite these challenges, geoengineering's potential benefits make it a critical research area. This report explores application of the Performance Assessment (PA) methodology to Arctic Climate Intervention, providing an initial screening of relevant features, events, and processes (FEPs). At the core of the PA approach is the identification and evaluation of FEPs that could impact the performance of the intervention scheme. Here we provide an initial screening of FEPs to consider in the application of PA to Arctic Climate Intervention.

54 ENVIRONMENTAL SCIENCES↗

Synthetic Promoter Screening Using Poplar Mesophyll Protoplast Transformation

Plant protoplasts are useful to study both transcriptional regulation and protein subcellular localization in rapid screens. Protoplast transformation can be used in automated platforms for design-build-test cycles of plant promoters, including synthetic promoters. A notable application of protoplasts comes from recent successes in dissecting synthetic promoter activity with poplar mesophyll protoplasts. For this purpose, we constructed plasmids with TurboGFP driven by a synthetic promoter together with TurboRFP constitutively controlled by a 35S promoter, to monitor transformation efficiency, allowing versatile screening of high numbers of cells by monitoring green fluorescent protein expression in transformed protoplasts. Herein, we introduce a protocol for poplar mesophyll protoplast isolation followed by protoplast transformation and image analysis for the selection of valuable synthetic promoters.

59 BASIC BIOLOGICAL SCIENCES↗

Development of a web-based screening tool for ground source heat pump applications

Ground source heat pump (GSHP) technology has great potential to help the nation meet its energy and decarbonization goals, but several barriers hinder the wide application of GSHP. Important barriers include the lack of a coherent toolset for analyzing the technical feasibility and economic viability of the GSHP application. The current design and analysis methods are ineffective and require significant expertise to apply. Although building energy modeling is increasingly important in designing buildings, the tools for GSHP modeling and simulation are lacking. A web-based free-to-use tool is being developed for quick techno-economic analysis of GSHP applications in nearly any building in the United States. This tool is enabled by improvements in the calculation methodology to allow rapid sizing of borehole configurations that provide significant cost savings. The screening tool currently uses US Department of Energy (DOE) prototype building models and an extended g-function library to size ground heat exchangers and simulate the performance of GSHP systems. The team is integrating with DOE's Oak Ridge National Laboratory's AutoBEM program to automatically create a building model based on user inputs. This paper introduces the structure, components, features, and results of the web-based screening tool for GSHP applications. Future directions for further developing the tool are also discussed.

Liu, Xiaobing↗

Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS

Cost-effective hydrolysis of biomass into sugars for biofuel production requires high-performance low-cost glycoside hydrolase (GH) cocktails that are active under demanding process conditions. Improving the performance of GH cocktails depends on knowledge of many critical parameters, including individual enzyme stabilities, optimal reaction conditions, kinetics, and specificity of reaction. With this information, rate- and/or yield-limiting reactions can be potentially improved through substitution, synergistic complementation, or protein engineering. Given the wide range of substrates and methods used for GH characterization, it is difficult to compare results across a myriad of approaches to identify high performance and synergistic combinations of enzymes. Here, we describe a platform for systematic screening of GH activities using automatic biomass handling, bioconjugate chemistry, robotic liquid handling, and nanostructure-initiator mass spectrometry (NIMS). Twelve well-characterized substrates spanning the types of glycosidic linkages found in plant cell walls are included in the experimental workflow. To test the application of this platform and substrate panel, we studied the reactivity of three engineered cellulases and their synergy of combination across a range of reaction conditions and enzyme concentrations. We anticipate that large-scale screening using the standardized platform and substrates will generate critical datasets to enable direct comparison of enzyme activities for cocktail design.

09 BIOMASS FUELS↗

Bioprospecting Trichoderma: A Systematic Roadmap to Screen Genomes and Natural Products for Biocontrol Applications

Natural products derived from microbes are crucial innovations that would help in reaching sustainability development goals worldwide while achieving bioeconomic growth. Trichoderma species are well-studied model fungal organisms used for their biocontrol properties with great potential to alleviate the use of agrochemicals in agriculture. However, identifying and characterizing effective natural products in novel species or strains as biological control products remains a meticulous process with many known challenges to be navigated. Integration of recent advancements in various “omics” technologies, next generation biodesign, machine learning, and artificial intelligence approaches could greatly advance bioprospecting goals. Herein, we propose a roadmap for assessing the potential impact of already known or newly discovered Trichoderma species for biocontrol applications. By screening publicly available Trichoderma genome sequences, we first highlight the prevalence of putative biosynthetic gene clusters and antimicrobial peptides among genomes as an initial step toward predicting which organisms could increase the diversity of natural products. Next, we discuss high-throughput methods for screening organisms to discover and characterize natural products and how these findings impact both fundamental and applied research fields.

59 BASIC BIOLOGICAL SCIENCES↗

A genetic screen for dominant chloroplast reactive oxygen species signaling mutants reveals life stage-specific singlet oxygen signaling networks

Plants employ intricate molecular mechanisms to respond to abiotic stresses, which often lead to the accumulation of reactive oxygen species (ROS) within organelles such as chloroplasts. Such ROS can produce stress signals that regulate cellular response mechanisms. One ROS, singlet oxygen ( 1 O 2 ), is predominantly produced in the chloroplast during photosynthesis and can trigger chloroplast degradation, programmed cell death (PCD), and retrograde (organelle-to-nucleus) signaling. However, little is known about the molecular mechanisms involved in these signaling pathways or how many different signaling 1 O 2 pathways may exist. The Arabidopsis thaliana plastid ferrochelatase two (fc2) mutant conditionally accumulates chloroplast 1 O 2 , making fc2 a valuable genetic system for studying chloroplast 1 O 2 -initiated signaling. Here, we have used activation tagging in a new forward genetic screen to identify eight dominant fc2 activation-tagged (fas) mutations that suppress chloroplast 1 O 2 -initiated PCD. While 1 O 2 -triggered PCD is blocked in all fc2 fas mutants in the adult stage, such cellular degradation in the seedling stage is blocked in only two mutants. This differential blocking of PCD suggests that life-stage-specific 1 O 2 -response pathways exist. In addition to PCD, fas mutations generally reduce 1 O 2 -induced retrograde signals. Furthermore, fas mutants have enhanced tolerance to excess light, a natural mechanism to produce chloroplast 1 O 2 . However, general abiotic stress tolerance was only observed in one fc2 fas mutant (fc2 fas2). Together, this suggests that plants can employ general stress tolerance mechanisms to overcome 1 O 2 production but that this screen was mostly specific to 1 O 2 signaling. We also observed that salicylic acid (SA) and jasmonate (JA) stress hormone response marker genes were induced in 1 O 2 -stressed fc2 and generally reduced by fas mutations, suggesting that SA and JA signaling is correlated with active 1 O 2 signaling and PCD. Together, this work highlights the complexity of 1 O 2 signaling by demonstrating that multiple pathways may exist and introduces a suite of new 1 O 2 signaling mutants to investigate the mechanisms controlling chloroplast-initiated degradation, PCD, and retrograde signaling.

59 BASIC BIOLOGICAL SCIENCES↗

A Novel Assay for Profiling GBM Cancer Model Heterogeneity and Drug Screening

Accurate patient-derived models of cancer are needed for profiling the disease and for testing therapeutics. These models must not only be accurate, but also suitable for high-throughput screening and analysis. Here we compare two derivative cancer models, microtumors and spheroids, to the gold standard model of patient-derived orthotopic xenografts (PDX) in glioblastoma multiforme (GBM). To compare these models, we constructed a custom NanoString panel of 350 genes relevant to GBM biology. This custom assay includes 16 GBM-specific gene signatures including a novel GBM subtyping signature. We profiled 11 GBM-PDX with matched orthotopic cells, derived microtumors, and derived spheroids using the custom NanoString assay. In parallel, these derivative models underwent drug sensitivity screening. We found that expression of certain genes were dependent on the cancer model while others were model-independent. These model-independent genes can be used in profiling tumor-specific biology and in gauging therapeutic response. It remains to be seen whether or not cancer model-specific genes may be directly or indirectly, through changes to tumor microenvironment, manipulated to improve the concordance of in vitro derivative models with in vivo models yielding better prediction of therapeutic response.

Stackhouse, Christian T. (ORCID:0000000266601963)↗

Library Screening, In Vivo Confirmation, and Structural and Bioinformatic Analysis of Pentapeptide Sequences as Substrates for Protein Farnesyltransferase

Protein farnesylation is a post-translational modification where a 15-carbon farnesyl isoprenoid is appended to the C-terminal end of a protein by farnesyltransferase (FTase). This process often causes proteins to associate with the membrane and participate in signal transduction pathways. The most common substrates of FTase are proteins that have C-terminal tetrapeptide CaaX box sequences where the cysteine is the site of modification. However, recent work has shown that five amino acid sequences can also be recognized, including the pentapeptides CMIIM and CSLMQ. In this work, peptide libraries were initially used to systematically vary the residues in those two parental sequences using an assay based on Matrix Assisted Laser Desorption Ionization–Mass Spectrometry (MALDI-MS). In addition, 192 pentapeptide sequences from the human proteome were screened using that assay to discover additional extended CaaaX-box motifs. Selected hits from that screening effort were rescreened using an in vivo yeast reporter protein assay. The X-ray crystal structure of CMIIM bound to FTase was also solved, showing that the C-terminal tripeptide of that sequence interacted with the enzyme in a similar manner as the C-terminal tripeptide of CVVM, suggesting that the tripeptide comprises a common structural element for substrate recognition in both tetrapeptide and pentapeptide sequences. Molecular dynamics simulation of CMIIM bound to FTase further shed light on the molecular interactions involved, showing that a putative catalytically competent Zn(II)-thiolate species was able to form. Bioinformatic predictions of tetrapeptide (CaaX-box) reactivity correlated well with the reactivity of pentapeptides obtained from in vivo analysis, reinforcing the importance of the C-terminal tripeptide motif. This analysis provides a structural framework for understanding the reactivity of extended CaaaX-box motifs and a method that may be useful for predicting the reactivity of additional FTase substrates bearing CaaaX-box sequences.

59 BASIC BIOLOGICAL SCIENCES↗