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At least 721 records · Page 40

Asymptotic convergence of the angular discretization error in the scalar flux computed from the particle transport equation with the method of discrete ordinates

The asymptotic convergence of the angular discretization error in the scalar flux solution of the particle transport equation computed with the Discrete Ordinates (S N ) method with increasing quadrature order is examined. Five selected angular quadrature types are considered: Level Symmetric (LS), Legendre-Chebyshev Quadrangular (LCQ), Legendre-Chebyshev Triangular(LCT), Quadruple Range (QR) and Quadruple Range Spence-type (QRS) quadrature sets. We relate the S N angular discretization error to the quadrature error, and split the total flux into the uncollided flux and the fully collided flux, and then we verify the uncollided scalar flux error and the fully collided scalar flux error separately. After developing the theoretical basis for the relationship between true solution regularity and quadrature rule error, we employ a two-dimensional problem to verify the observed and theoretical convergence orders for the region-averaged uncollided and fully collided scalar flux errors. Numerical results show that the angular discretization errors in the region-averaged scalar flux obtained by different quadrature types converge with different rates, that are commensurate with the regularity order of the exact angular flux within the quadrature-designed integration interval. The angular discretization error in the uncollided region-averaged scalar flux obtained by LC class quadratures converges linearly, and the error obtained by QR class quadrature sets converges quadratically. The angular discretization error in the fully collided region-averaged scalar flux converges linearly for LC class quadratures, and faster-than-second order for QR class quadrature sets.

42 ENGINEERING↗

Solvable rational extensions of the isotonic oscillator

Highlights: > We obtain in a new way the solvable rational extensions of the isotonic oscillator. > The method is systematic without resorting to any ansatz. > We use a generalization of the SUSY quantum partnership to excited states. > They are regularized by specific discrete symmetries of the potential. > The proof of the shape invariance of the extensions is direct. - Abstract: Combining recent results on rational solutions of the Riccati-Schroedinger equations for shape invariant potentials to the finite difference Baecklund algorithm and specific symmetries of the isotonic potential, we show that it is possible to generate the three infinite sets (L1, L2 and L3 families) of regular rational solvable extensions of this potential in a very direct and transparent way.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Classical probabilities for Majorana and Weyl spinors

Highlights: > Map of classical statistical Ising model to fermionic quantum field theory. > Lattice-regularized real Grassmann functional integral for single Weyl spinor. > Emerging complex structure characteristic for quantum physics. > A classical statistical ensemble describes a quantum theory. - Abstract: We construct a map between the quantum field theory of free Weyl or Majorana fermions and the probability distribution of a classical statistical ensemble for Ising spins or discrete bits. More precisely, a Grassmann functional integral based on a real Grassmann algebra specifies the time evolution of the real wave function q{sub {tau}}(t) for the Ising states {tau}. The time dependent probability distribution of a generalized Ising model obtains as p{sub {tau}}(t)=q{sub {tau}}{sup 2}(t). The functional integral employs a lattice regularization for single Weyl or Majorana spinors. We further introduce the complex structure characteristic for quantum mechanics. Probability distributions of the Ising model which correspond to one or many propagating fermions are discussed explicitly. Expectation values of observables can be computed equivalently in the classical statistical Ising model or in the quantum field theory for fermions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Asymptotic geometric phase and purity for phase qubit dispersively coupled to lossy LC circuit

Analytical descriptions of the geometric phases (GPs) for the total system and subsystems are studied for a current biased Josephson phase qubit strongly coupled to a lossy LC circuit in the dispersive limit. It is found that, the GP and purity depend on the damping parameter which leads to the phenomenon of GP death. Coherence parameter delays the phenomenon of a regular sequence of deaths and births of the GP. The asymptotic behavior of the GP and the purity for the qubit-LC resonator state closely follow that for the qubit state, but however, for the LC circuit these asymptotic values are equal to zero. - Highlights: > The model of a current biased Josephson phase qubit, strongly coupled to loss LC circuit, is considered. > Analytical descriptions of the geometric phase (GP) of this model, in the dispersive limit, are studied. > The GP and purity depend on the dissipation which leads to the GP death phenomenon. > Coherence parameter delays the phenomenon of a regular sequence of deaths and births of the GP.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Geometry and symmetries in lattice spinor gravity

Lattice spinor gravity is a proposal for regularized quantum gravity based on fermionic degrees of freedom. In our lattice model the local Lorentz symmetry is generalized to complex transformation parameters. The difference between space and time is not put in a priori, and the euclidean and the Minkowski quantum field theory are unified in one functional integral. The metric and its signature arise as a result of the dynamics, corresponding to a given ground state or cosmological solution. Geometrical objects as the vierbein, spin connection or the metric are expectation values of collective fields built from an even number of fermions. The quantum effective action for the metric is invariant under general coordinate transformations in the continuum limit. The action of our model is found to be also invariant under gauge transformations. We observe a 'geometrical entanglement' of gauge- and Lorentz-transformations due to geometrical objects transforming non-trivially under both types of symmetry transformations. - Highlights: Black-Right-Pointing-Pointer We formulate the geometrical aspects of a proposal for a lattice regularized model of quantum gravity. Black-Right-Pointing-Pointer The vierbein shows an entanglement between Lorentz symmetry and gauge symmetry. Black-Right-Pointing-Pointer Euclidean and Minkowski signatures of the collective metric and the vierbein are described within the same functional integral.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Quantization of gauge fields, graph polynomials and graph homology

We review quantization of gauge fields using algebraic properties of 3-regular graphs. We derive the Feynman integrand at n loops for a non-abelian gauge theory quantized in a covariant gauge from scalar integrands for connected 3-regular graphs, obtained from the two Symanzik polynomials. The transition to the full gauge theory amplitude is obtained by the use of a third, new, graph polynomial, the corolla polynomial. This implies effectively a covariant quantization without ghosts, where all the relevant signs of the ghost sector are incorporated in a double complex furnished by the corolla polynomial–we call it cycle homology–and by graph homology. -- Highlights: •We derive gauge theory Feynman from scalar field theory with 3-valent vertices. •We clarify the role of graph homology and cycle homology. •We use parametric renormalization and the new corolla polynomial.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Chiral Thirring–Wess model

The vector type of interaction of the Thirring–Wess model was replaced by the chiral type and a new model was presented which was termed as chiral Thirring–Wess model in Rahaman (2015). The model was studied there with a Faddeevian class of regularization. Few ambiguity parameters were allowed there with the apprehension that unitarity might be threatened like the chiral generation of the Schwinger model. In the present work it has been shown that no counter term containing the regularization ambiguity is needed for this model to be physically sensible. So the chiral Thirring–Wess model is studied here without the presence of any ambiguity parameter and it has been found that the model not only remains exactly solvable but also does not lose the unitarity like the chiral generation of the Schwinger model. The phase space structure and the theoretical spectrum of this new model have been determined in the present scenario. The theoretical spectrum is found to contain a massive boson with ambiguity free mass and a massless boson.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

One-loop corrections to light cone wave functions: The dipole picture DIS cross section

We develop methods to perform loop calculations in light cone perturbation theory using a helicity basis, refining the method introduced in our earlier work. In particular this includes implementing a consistent way to contract the four-dimensional tensor structures from the helicity vectors with d-dimensional tensors arising from loop integrals, in a way that can be fully automatized. We demonstrate this explicitly by calculating the one-loop correction to the virtual photon to quark–antiquark dipole light cone wave function. This allows us to calculate the deep inelastic scattering cross section in the dipole formalism to next-to-leading order accuracy. Our results, obtained using the four dimensional helicity scheme, agree with the recent calculation by Beuf using conventional dimensional regularization, confirming the regularization scheme independence of this cross section.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The exact discontinuity of a partial wave along the left-hand cut and the exact N∕D method in non-relativistic scattering

We first deduce the analytical continuation in the complex planes of the initial and final three-momenta of the Lippmann–Schwinger equation in coupled or uncoupled partial-wave amplitudes. This result allows us to deduce a master equation whose solution is the exact discontinuity of the on-shell partial-wave amplitudes along the left-hand cut. This equation is always a linear non-singular integral equation whose solution is fixed exclusively by the knowledge of the potential, applicable to either regular or singular potentials. The capability of calculating exactly this discontinuity allows one to settle the exact N∕D method in two-body non-relativistic scattering for coupled and uncoupled waves. We exemplify this new advance in scattering theory by explicitly checking the agreement between the Lippmann–Schwinger equation with the corresponding solutions of the exact N∕D method for some examples that involve regular and singular potentials, either attractive or repulsive.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Electromagnetic and gravitational interactions from Lagrangian mechanics

Highlights: • Background Maxwell and Einstein fields are universal features of Lagrangian systems. • The Lagrangian function is promoted to a dynamic field. • The Einstein–Maxwell theory is derived from Lagrangian mechanics. Background fields of electromagnetic and gravitational type emerge in the low kinetic energy limit of any regular Lagrangian system and, in particular, in the corresponding limit of any spacetime theory in which the free motion of test particles is described by an unspecified regular Lagrangian. Electromagnetic and gravitational type interactions are therefore a universal feature of low kinetic energy Lagrangian systems. These background interactions can be consistently turned into dynamic Einstein–Maxwell fields by promoting the Lagrangian function to a dynamic scalar field on the tangent bundle of the configuration space. Accordingly, Einstein–Maxwell theory can be deduced from the assumption that the motion of elementary test particles in spacetime is described by Lagrangian mechanics. For higher kinetic energy-type values, identified with the square of the invariant mass of the particle, the Lagrangian induces higher rank interactions that seem however too weak to have been detected in spacetime physics, but which might prove relevant at the Planck scale.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Optical conductivity of multi-Weyl node semimetals due to electromagnetic and axial pseudogauge fields

Here, we compute the optical conductivity of a multi-Weyl semimetal in the presence of electromagnetic and axial fields. In the first part of the paper we use a U(1) gauge field to compute the current of a multi-Weyl semimetal. The current is used in the computation of the optical conductivity within the Kubo-Matsubara formalism. We consider a multi-Weyl semimetal with two nodal points in the z-direction. The multi-Weyl semimetal has a width D in the transverse direction which is smaller than the length L in the longitudinal direction. Due to the width D we replace the model by a sum of transverse modes in 1+1 dimensions. We then regularize the model in 1+1 dimensions. The nodal points are responsible for a constant axial field and a static anomalous Hall effect. In the second part we study the effect of dynamic axial fields. An elastic deformation couples to the two electronic chiralities, and represents the axial pseudogauge field $\vec{a}$ 5 . As a consequence, the system is excited by two kinds of field, the electromagnetic one and the axial srain field. For a Weyl system this is represented by the triangle diagram, which is responsible for the anomalous Hall effect. We can obtain the anomalous Hall effect also by a chiral transformation in 1+1 dimensions using regularization. The chiral transformation modifies the path integration measure and is the source of the induced anomalous Hall effect. The latter is controlled by a combination of strain waves and electromagnetic fields.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The role of amino acid electron-donor/acceptor atoms in host-cell binding peptides is associated with their 3D structure and HLA-binding capacity in sterile malarial immunity induction

Highlights: Black-Right-Pointing-Pointer Fundamental residues located in some HABPs are associated with their 3D structure. Black-Right-Pointing-Pointer Electron-donor atoms present in {beta}-turn, random, distorted {alpha}-helix structures. Black-Right-Pointing-Pointer Electron-donor atoms bound to HLA-DR53. Black-Right-Pointing-Pointer Electron-acceptor atoms present in regular {alpha}-helix structure bound to HLA-DR52. -- Abstract: Plasmodium falciparum malaria continues being one of the parasitic diseases causing the highest worldwide mortality due to the parasite's multiple evasion mechanisms, such as immunological silence. Membrane and organelle proteins are used during invasion for interactions mediated by high binding ability peptides (HABPs); these have amino acids which establish hydrogen bonds between them in some of their critical binding residues. Immunisation assays in the Aotus model using HABPs whose critical residues had been modified have revealed a conformational change thereby enabling a protection-inducing response. This has improved fitting within HLA-DR{beta}1{sup Asterisk-Operator} molecules where amino acid electron-donor atoms present in {beta}-turn, random or distorted {alpha}-helix structures preferentially bound to HLA-DR53 molecules, whilst HABPs having amino acid electron-acceptor atoms present in regular {alpha}-helix structure bound to HLA-DR52. This data has great implications for vaccine development.

60 APPLIED LIFE SCIENCES↗

Phi ({Phi}) and psi ({Psi}) angles involved in malarial peptide bonds determine sterile protective immunity

Highlights: Black-Right-Pointing-Pointer Phi ({Phi}) and psi ({Psi}) angles determine sterile protective immunity. Black-Right-Pointing-Pointer Modified peptide's tendency to assume a regular conformation related to a PPII{sub L}. Black-Right-Pointing-Pointer Structural modifications in mHABPs induce Ab and protective immunity. Black-Right-Pointing-Pointer mHABP backbone atom's interaction with HLA-DR{beta}1{sup Asterisk-Operator} is stabilised by H-bonds. -- Abstract: Modified HABP (mHABP) regions interacting with HLA-DR{beta}1{sup Asterisk-Operator} molecules have a more restricted conformation and/or sequence than other mHABPs which do not fit perfectly into their peptide binding regions (PBR) and do not induce an acceptable immune response due to the critical role of their {Phi} and {Psi} torsion angles. These angle's critical role was determined in such highly immunogenic, protection-inducing response against experimental malaria using the conformers (mHABPs) obtained by {sup 1}H-NMR and superimposed into HLA-DR{beta}1{sup Asterisk-Operator }-like Aotus monkey molecules; their phi ({Phi}) and psi ({Psi}) angles were measured and the H-bond formation between these molecules was evaluated. The aforementioned mHABP propensity to assume a regular conformation similar to a left-handed polyproline type II helix (PPII{sub L}) led to suggesting that favouring these conformations according to their amino acid sequence would lead to high antibody titre production and sterile protective immunity induction against malaria, thereby adding new principles or rules for vaccine development, malaria being one of them.

60 APPLIED LIFE SCIENCES↗

Light exposure influences the diurnal oscillation of gut microbiota in mice

Highlights: • Gut microbiota displayed robust rhythmic fluctuation in both compositional and functional level in mice. • The fluctuation of gut microbiota was modulated by enviromental light exposure. • The abundance of Clostridiawas dramatically enhanced in the small intestine when mice were underwent constant darkness. The gut microbiota exhibit diurnal compositional and functional oscillations that influence the host homeostasis. However, the upstream factors that affect the microbial oscillations remain elusive. Here, we focused on the potential impact of light exposure, the main factor that affects the host circadian oscillation, on the diurnal oscillations of intestinal microflora to explore the upstream factor that governs the fluctuations of the gut microbes. The gut microbiota of the mice that were underwent regular light/dark (LD) cycles exhibited a robust rhythm at both compositional and functional level, in all parts of the intestine. Comparably, constant darkness (Dark-Dark, DD) led to the loss of the rhythmic oscillations in almost all parts of the intestine. Additionally, the abundance of Clostridia in DD conditions was dramatically enhanced in the small intestine. Our data indicated light exposure is the upstream factor that governs the regular diurnal fluctuations of gut microbiota in vivo.

60 APPLIED LIFE SCIENCES↗

Dietary mung bean protein reduces high-fat diet-induced weight gain by modulating host bile acid metabolism in a gut microbiota-dependent manner

Highlights: • Mung bean protein intake reduces high fat diet-induced weight gain, fat accumulation, and hepatic steatosis. . • Mung bean protein intake increases plasma GLP-1 and intestinal secondary bile acids. • The anti-obesity effects occur via a mechanism that depends on the gut microbiota. The 8-globulin-rich mung bean protein (MPI) suppresses hepatic lipogenesis in rodent models and reduces fasting plasma glucose and insulin levels in obese adults. However, its effects on mitigating high fat diet (HFD)-induced obesity and the mechanism underlying these effects remain to be elucidated. Herein, we examined the metabolic phenotype, intestinal bile acid (BA) pool, and gut microbiota of conventionally raised (CONV-R) male C57BL/6 mice and germ-free (GF) mice that were randomized to receive either regular HFD or HFD containing mung bean protein isolate (MPI) instead of the dairy protein present in regular HFD. MPI intake significantly reduced HFD-induced weight gain and adipose tissue accumulation, and attenuated hepatic steatosis. Enhancement in the secretion of intestinal glucagon-like peptide-1 (GLP-1) and an enlarged cecal and fecal BA pool of dramatically elevated secondary/primary BA ratio were observed in mice that had consumed MPI. These effects were abolished in GF mice, indicating that the effects were dependent upon the presence of the microbiota. As revealed by 16S rRNA gene sequence analysis, MPI intake also elicited dramatic changes in the gut microbiome, such as an expansion of taxa belonging to the phylum Bacteroidetes along with a reduced abundance of the Firmicutes.

60 APPLIED LIFE SCIENCES↗

The effect of cyclic tensile force on the actin cytoskeleton organization and morphology of human periodontal ligament cells

Highlights: • Tension force upregulates F-actin, Girdin and Akt expression in the PDL. • The actin filament was changed to be regular lines under tension stimulation. • Girdin are required for PDL cell to response to mechanical stimulation. • Tension force upregulates lysosomes and matrix vesicles in Girdin-depleted PDL. To explore Girdin/Akt pathway protein expression and morphology change by cyclic tension in the periodontal ligament cells. Human periodontal ligament cells were exposed to cyclic tension force at 4000 μstrain and 0.5 Hz for 6 h though a four-point bending system. Cyclic tension force upregulated F-actin, Girdin and Akt expression in hPDL. In transmission electron microscope assay showed that there are more and bigger mitochondria, more and longer cynapses, more cellular organisms after tension force stimulation than control. The actin filament was changed to be regular lines and pointed to poles of cells. However, we found that the Girdin-depleted cells are small and there are more micro-organisms including more lysosomes and matrix vesicles than control. These finding suggest that the STAT3/Girdin/Akt pathway in PDL to response to mechanical stimulation as well, and Girdin may play a significant role in triggering cell proliferation and migration during orthodontic treatment. It provided an insight into the molecular basis for development of a vitro cell model in studying orthodontic treatment.

60 APPLIED LIFE SCIENCES↗

Sampling-based Uncertainty Quantification in Deconvolution of X-ray Radiographs

In imaging applications that focus on quantitative analysis{such as X-ray radiography in the security sciences--it is necessary to be able to reliably estimate the uncertainties in the processing algorithms applied to the image data, and deconvolving the system blur out of the image is usually an essential step. In this work we solve the deconvolution problem within a Bayesian framework for edge-enhancing reconstruction with uncertainty quantification. The likelihood is a normal approximation to the Poisson likelihood, and the prior is generated from a classical total variation regularized Poisson deconvolution. Samples from the corresponding posterior distribution are computed using a Markov chain Monte Carlo approach, giving a pointwise measure of uncertainty in the final, deconvolved signal. We demonstrate the results on real data used to calibrate a high-energy X-ray source and show that this approach gives reconstructions as good as classical regularization methods, while mitigating many of their drawbacks.

Deconvolution, Inverse Problems, Markov Chain Mont↗

A paraboloid fitting technique for calculating curvature from piecewise-linear interface reconstructions on 3D unstructured meshes

In this work, we present a novel method for calculating interface curvature on 3D unstructured meshes from piecewise-linear interface reconstructions typically generated in the volume of fluid method. Interface curvature is a necessary quantity to calculate in order to model surface tension driven flow. Curvature needs only to be computed in cells containing an interface. The approach requires a stencil containing only neighbors sharing a node with a target cell, and calculates curvature from a least-squares paraboloid fit to the interface reconstructions. This involves solving a 6 × 6 symmetric linear system in each mixed cell. We present verification tests where we calculate the curvature of a sphere, an ellipsoid, and a sinusoid in a 3D domain on regular Cartesian meshes, distorted hex meshes, and tetrahedral meshes. Lastly, for both regular and unstructured meshes, we find in all cases the paraboloid fitting method for curvature to converge between first and second order with grid refinement.

97 MATHEMATICS AND COMPUTING↗