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At least 721 records · Page 40

All sources NASA NTRS DOE OSTI

DOE OSTI2012

Identification of Novel Positive-Strand RNA Viruses by Metagenomic Analysis of Archaea-Dominated Yellowstone Hot Springs

There are no known RNA viruses that infect Archaea. Filling this gap in our knowledge of viruses will enhance our understanding of the relationships between RNA viruses from the three domains of cellular life and, in particular, could shed light on the origin of the enormous diversity of RNA viruses infecting eukaryotes. We describe here the identification of novel RNA viral genome segments from high-temperature acidic hot springs in Yellowstone National Park in the United States. These hot springs harbor low-complexity cellular communities dominated by several species of hyperthermophilic Archaea. A viral metagenomics approach was taken to assemble segments of these RNA virus genomes from viral populations isolated directly from hot spring samples. Analysis of these RNA metagenomes demonstrated unique gene content that is not generally related to known RNA viruses of Bacteria and Eukarya. However, genes for RNA-dependent RNA polymerase (RdRp), a hallmark of positive-strand RNA viruses, were identified in two contigs. One of these contigs is approximately 5,600 nucleotides in length and encodes a polyprotein that also contains a region homologous to the capsid protein of nodaviruses, tetraviruses, and birnaviruses. Phylogenetic analyses of the RdRps encoded in these contigs indicate that the putative archaeal viruses form a unique group that is distinct from the RdRps of RNA viruses of Eukarya and Bacteria. Collectively, our findings suggest the existence of novel positive-strand RNA viruses that probably replicate in hyperthermophilic archaeal hosts and are highly divergent from RNA viruses that infect eukaryotes and even more distant from known bacterial RNA viruses. These positive-strand RNA viruses might be direct ancestors of RNA viruses of eukaryotes.

15 GEOTHERMAL ENERGY↗

DOE OSTI2012

Electromagnetic radiation from positive-energy bound electrons in the Coulomb field of a nucleus at rest in a strong uniform magnetic field

A classical analysis is presented of the electromagnetic radiation emitted by positive-energy electrons performing bound motion in the Coulomb field of a nucleus at rest in a strong uniform magnetic field. Bounded trajectories exist and span a wide range of velocity directions near the nucleus (compared to free trajectories with similar energies) when the electron Larmor radius is smaller than the distance at which the electron-nucleus Coulomb interaction energy is equal to the mechanical energy of an electron. The required conditions occur in magnetic white dwarf photospheres and have been achieved in experiments on production of antihydrogen. Under these conditions, the radiant power per unit volume emitted by positive-energy bound electrons is much higher than the analogous characteristic of bremsstrahlung (in particular, in thermal equilibrium) at frequencies that are below the electron cyclotron frequency but higher than the inverse transit time through the interaction region in a close collision in the absence of a magnetic field. The quantum energy discreteness of positive-energy bound states restricts the radiation from an ensemble of bound electrons (e.g., in thermal equilibrium) to nonoverlapping spectral lines, while continuum radiative transfer is dominated by linearly polarized bremsstrahlung.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2013

Positive parity states and some electromagnetic transition properties of even-odd europium isotopes

The positive-parity low-spin states of even-odd Europium isotopes ({sup 151-155}Eu) were studied within the framework of the interacting boson-fermion model. The calculated positive low-spin state energy spectra of the odd Eu isotope were found to agree quite well with the experimental data. The B(E2) values were also calculated and it was found that the calculated positive-parity low-spin state energy spectra of the odd-A Eu isotopes agree quite well with the experimental data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2019

Extreme Fast Charge Challenges for Lithium-Ion Battery: Variability and Positive Electrode Issues

Enabling a 10 min fast charge for electric vehicles is a possible route to reduce range anxiety and increase the utility of electric vehicles. While lithium plating during fast charging is a known challenge, the full suite of limitations which occur in full cells during a 10 min fast charge are unknown. In the present work the central constraints of extreme fast charging are explored through extensive experiments and analysis in single layer graphite/NMC532 pouch cells. Methods of developing fast-charging protocols considering the impedance and transport limitations are presented and the relative benefits of altering the charging rate, profile, relaxation, etc., are investigated. Analysis during and at the end of cycling identified both known and unexpected aging pathways. The most distinct outcomes from the work are a significant increase in cell-to-cell variability as the number of fast charge cycles increase [up to 11% (1σ)] and the identification of distinct aging of the NMC532 positive electrode including cracking of the secondary particles and a trend toward under-lithiation of the positive electrode. Here, while significant aging of the positive electrode was observed, only a few conditions had discernible Li plating and no distinct reversible Li signature was seen during periodic reference performance tests.

25 ENERGY STORAGE↗

DOE OSTI2022

Direct-Sampling Beam Position Monitor (dsbpm) v1.0

Direct-Sampling Beam Position Monitor is an FPGA gateware and embedded firmware that run on evaluation kits (either Xilinx ZCU111 or Xilinx ZCU208 ) that digitizes signals up to 4GSPS and 4GHz analog bandwidth, which can be synchronized to the accelerator timing system, providing synchronous sampling frequency/phase digitization. In addition to these capabilities, a proof of concept for a beam position monitor is also present, providing an envelope detection algorithm capable of determining the transverse beam position for an electron circular accelerator, such as ALS/ALS-U.

Norum, William↗

DOE OSTI2012

Reconstructing the South Pacific Convergence Zone Position during the Presatellite Era: A La Niña Case Study

Sixty-four southwest Pacific island meteorological stations were utilized to develop ENSO-related austral warm season (November–April) rainfall climatologies for 1961–90. Historical data for the same station set were then examined for 1955/56, one of the strongest La Niñas of the twentieth century. The pattern for that event was typical of a well-coupled protracted La Niña, with above-normal rainfall (>150%) observed for 17 stations in the case study. Tropical cyclone tracks were also used to illustrate the proximal effects of historical storms on station rainfall. Several stations that were located along the northern edge of the tropical cyclone swarm, but south of a region of anomalously low rainfall, were selected as possible candidates having been close to the mean South Pacific convergence zone (SPCZ) location. Linear interpolations between those stations highlighted a likely SPCZ position for the 1955/56 event. The reconstructed SPCZ location suggested a position southwest of normal, consistent with many La Niñas observed during the satellite era. The 1955/56 SPCZ reconstruction compared favorably with NOAA Cooperative Institute for Research in Environmental Sciences (CIRES) twentieth-century reanalysis (20CR) positions of maximum atmospheric water content and omega (time derivative of pressure that illustrates vertical velocity, and a proxy for convection and SPCZ location) at 500 hPa. Comparisons between Global Precipitation Climatology Project (GPCP) warm season rainfall composite plots for several satellite era La Niñas and one well-coupled La Niña event that occurred during 2010/11 to omega at 500 hPa and maximum rainfall amounts suggest that the 1955/56 reconstruction from in situ rainfall measurements captured the SPCZ location. Our results suggest that use of the 20CR could help to identify hemispheric-scale atmospheric circulation features like the SPCZ and improve understanding of ENSO dynamics prior to the satellite era.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2014

Leading-process actomyosin coordinates organelle positioning and adhesion receptor dynamics in radially migrating cerebellar granule neurons

During brain development, neurons migrate from germinal zones to their final positions to assemble neural circuits. A unique saltatory cadence involving cyclical organelle movement (e.g., centrosome motility) and leading-process actomyosin enrichment prior to nucleokinesis organizes neuronal migration. While functional evidence suggests that leading-process actomyosin is essential for centrosome motility, the role of the actin-enriched leading process in globally organizing organelle transport or traction forces remains unexplored. Our results show that myosin ii motors and F-actin dynamics are required for Golgi apparatus positioning before nucleokinesis in cerebellar granule neurons (CGNs) migrating along glial fibers. Moreover, we show that primary cilia are motile organelles, localized to the leading-process F-actin-rich domain and immobilized by pharmacological inhibition of myosin ii and F-actin dynamics. Finally, leading process adhesion dynamics are dependent on myosin ii and F-actin. In conclusion, we propose that actomyosin coordinates the overall polarity of migrating CGNs by controlling asymmetric organelle positioning and cell-cell contacts as these cells move along their glial guides.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2017

Nonlatching positive feedback enables robust bimodality by decoupling expression noise from the mean

Fundamental to biological decision-making is the ability to generate bimodal expression patterns where two alternate expression states simultaneously exist. Here in this study, we use a combination of single-cell analysis and mathematical modeling to examine the sources of bimodality in the transcriptional program controlling HIV’s fate decision between active replication and viral latency. We find that the HIV Tat protein manipulates the intrinsic toggling of HIV’s promoter, the LTR, to generate bimodal ON-OFF expression, and that transcriptional positive feedback from Tat shifts and expands the regime of LTR bimodality. This result holds for both minimal synthetic viral circuits and full-length virus. Strikingly, computational analysis indicates that the Tat circuit’s non-cooperative ‘non-latching’ feedback architecture is optimized to slow the promoter’s toggling and generate bimodality by stochastic extinction of Tat. In contrast to the standard Poisson model, theory and experiment show that non-latching positive feedback substantially dampens the inverse noise-mean relationship to maintain stochastic bimodality despite increasing mean-expression levels. Given the rapid evolution of HIV, the presence of a circuit optimized to robustly generate bimodal expression appears consistent with the hypothesis that HIV’s decision between active replication and latency provides a viral fitness advantage. More broadly, the results suggest that positive-feedback circuits may have evolved not only for signal amplification but also for robustly generating bimodality by decoupling expression fluctuations (noise) from mean expression levels.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Environmental predictors of pulmonary nontuberculous mycobacteria (NTM) sputum positivity among persons with cystic fibrosis in the state of Florida

Nontuberculous mycobacteria (NTM) are opportunistic human pathogens that are commonly found in soil and water, and exposure to these organisms may cause pulmonary nontuberculous mycobacterial disease. Persons with cystic fibrosis (CF) are at high risk for developing pulmonary NTM infections, and studies have shown that prolonged exposure to certain environments can increase the risk of pulmonary NTM. It is therefore important to determine the risk associated with different geographic areas. Using annualized registry data obtained from the Cystic Fibrosis Foundation Patient Registry for 2010 through 2017, we conducted a geospatial analysis of NTM infections among persons with CF in Florida. A Bernoulli model in SaTScan was used to identify clustering of ZIP codes with higher than expected numbers of NTM culture positive individuals. Generalized linear mixed models with a binomial distribution were used to test the association of environmental variables and NTM culture positivity. We identified a significant cluster of M . abscessus and predictors of NTM sputum positivity, including annual precipitation and soil mineral levels.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

A positive feedback loop involving the Spa2 SHD domain contributes to focal polarization

Focal polarization is necessary for finely arranged cell-cell interactions. The yeast mating projection, with its punctate polarisome, is a good model system for this process. We explored the critical role of the polarisome scaffold protein Spa2 during yeast mating with a hypothesis motivated by mathematical modeling and tested by in vivo experiments. Our simulations predicted that two positive feedback loops generate focal polarization, including a novel feedback pathway involving the N-terminal domain of Spa2. We characterized the latter using loss-of-function and gain-of-function mutants. The N-terminal region contains a Spa2 Homology Domain (SHD) which is conserved from yeast to humans, and when mutated largely reproduced the spa2Δ phenotype. Our work together with published data show that the SHD domain recruits Msb3/4 that stimulates Sec4-mediated transport of Bud6 to the polarisome. There, Bud6 activates Bni1-catalyzed actin cable formation, recruiting more Spa2 and completing the positive feedback loop. We demonstrate that disrupting this loop at any point results in morphological defects. Gain-of-function perturbations partially restored focal polarization in a spa2 loss-of-function mutant without restoring localization of upstream components, thus supporting the pathway order. Thus, we have collected data consistent with a novel positive feedback loop that contributes to focal polarization during pheromone-induced polarization in yeast.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

The importance of accounting for landscape position when investigating grasslands: A multidisciplinary characterisation of a Californian coastal grassland

Data from the characterisation of the Point Reyes Field Site, published in AGU Earth's Future under the title: The importance of accounting for landscape position when investigating grasslands: A multidisciplinary characterisation of a Californian coastal grassland. This paper explored the effect of landscape position on the response of a Californian grassland to seasonal changes. All files are csv files. The EMI data contains 8 csv files with a metadata csv explaining the columns. The dataset also includes soil variables including total concentrations calculated from fused samples, then dissolved and measured on ICP-AES for whole-rock elements and ICP-MS for trace elements. Mineral composition was attained using X-ray diffraction at BL 11-3 at SSRL . Data was then run through the High Score database to characterise different mineral phases. total It also includes a table with bulk soil characteristics such as soil pH, cation exchange capacity, and soil textural data. Data from Teros 12 Meter soil moisture, electrical conductivity and temperature sensors are presented in SMS Csv file. While the WL bottom and top files contain data from Piezometers measuring the ground water table. We have included a csv file that contains soil CO2 efflux data from Feb 2021-Oct 2021 in the Point Reyes Grassland Experiment We have included the spatially orientated (easting northing) remotely sensed datasets that were used in the K-means clustering analysis conducted on our site with electrical conductivity, normalised difference vegetation index, elevation, slope, solar radiation, topographic position and wetness index, and a clustering score. Finally there is a list of all the identified grassland species at the site.For more information on flux data, please contact the corresponding author.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

solposx: A Python package for determining solar position and atmospheric refraction

solposx is a Python package of reference algorithms for calculating the sun’s position and atmospheric refraction. The package includes 11 solar position algorithms and 6 refraction models from the past 50 years. All functions follow a standardized design pattern, making it easy to compare different algorithms. The provided algorithm implementations have been thoroughly vetted, making the package a valuable research tool and a reliable reference for implementing solar position algorithms in other programming languages or applications.

Jensen, Adam R. [Technical University of Denmark, ↗

DOE OSTI2026

Pore-Scale Study on the Positive Feedback Between Stress and Porosity Caused by Pressure Solution in Porous Media

Pressure solution is an important process in the evolution of sedimentary rocks, which provide storage space for most of our petroleum resources. It directly influences the generation, migration, and storage of petroleum fluids in subsurface sedimentary rocks. Here, in this paper, we develop a pore-scale, mechanochemical model to demonstrate a possible positive feedback between the local porosity and pore surface stress, in which a higher local porosity causes a higher local pore surface stress, thus enhancing pressure solution and consequently further increasing the local porosity. Pore surface stress represents stress on a solid grain adjacent to a pore. Specifically, the pore-scale, mechanochemical model directly simulates the stress distribution over solid and pore surfaces using a finite element model. The dissolution of solids at the solid-pore interfaces under a far-from-equilibrium condition is simulated using a first-order kinetics model that accounts for the local stress distribution. The updated pore geometry, caused by pore surface dissolution, is then used in the stress simulation in the next numerical iteration. Two types of porous media, the Oriskany sandstone and an artificial porous medium with spherical pores, were tested in the mechanochemical simulation. The positive stress-porosity feedback during pressure solution was observed in both samples. In addition, the model quantitatively illustrated the distribution of local mineral dissolution rates on all pore surfaces, as well as its relation to the effective mineral dissolution rate of the entire sample. Based on the comparison between the two porous media, the local mineral dissolution was regulated by pore space distribution, geometry, and coalescence during pressure solution. This work is the first that uses direct, pore-scale numerical simulation to demonstrate the positive stress-porosity feedback during pressure solution, which has the potential to advance the understanding of the mechanical-chemical (MC) coupling in many geological processes that are relevant to subsurface energy systems, such as the recovery of petroleum hydrocarbons and geothermal energy.

CT scanning↗

DOE OSTI2016

Solar Position Model for use in DIORAMA

The DIORAMA code requires the solar position relative to earth in order to compute GPS satellite orientation. The present document describes two functions that compute the unit vector from either the center of the Earth to the Sun or from any observer’s position to the Sun at some specified time. Another function determines if a satellite lies within the Earth’s shadow umbra. Similarly, functions determine the position of the moon and whether a satellite lies within the Moon’s shadow umbra.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2018

Measurement of the Negative Pion and Positive Kaon Total Hadronic Cross Sections on Argon at the LArIAT Experiment

The Liquid Argon Time Projection Chamber (LArTPC) represents one of the most advanced experimental technologies for physics at the Intensity Frontier due to its full 3D-imaging, excellent particle identication and precise calorimetric energy reconstruction. By deploying a LArTPC in a dedicated calibration test beam line at Fermilab, LArIAT (Liquid Argon In A Testbeam) aims to experimentally calibrate this technology in a controlled environment and to provide physics results key to the neutrino oscillation physics and proton decay searches of the Short Baseline Neutrino (SBND, MicroBooNE, ICARUS) and Long Baseline Neutrino programs (DUNE). LArIAT's physics program entails a vast set of topics with a particular focus on the study of nuclear eects such as pion and kaon characteristic interaction modes. This thesis presents two measurements performed for the rst time: the measure- ment of the negative pion total hadronic cross section on argon in the 100-1050 MeV kinetic energy range and the measurement of the positive kaon total hadronic cross section on argon in the 100-650 MeV kinetic energy range. The analyses devised for these measurements use both the core elements of LArIAT: beamline and LArTPC. The rst step in each analysis is the development of an event selection based on beam- line and TPC information geared towards the identication of the hadron of interest. We then proceed to match the beamline candidate to a suitable TPC track. Finally, we apply the \thin slice method" technique and measure the cross section, correcting for background contamination and detector eects. The thin slice technique is a new method to measure hadron-argon cross sections possible only due to the combination of the tracking and calorimetry capability of the LArTPC technology. Albeit never on argon, the hadronic cross section of pions has been extensively measured before on lighter and heavier dierent elements in thin target experiments, leading to solid predictions for measurements on argon. Through the use of a dierent technique, our measurement of the negative pion total hadronic cross section on argon is in general agreement with the predictions by the Geant4 Bertini Cascade model which are based on data from thin target experiments. On the contrary, cross section measurements for kaons are extremely scarce, thus more dicult to model. Our measurement of the positive kaon total hadronic cross section on argon is mostly in tension with the Geant4 prediction over the explored range of energies and provides new experimental data to properly compare existing interaction models. This thesis also reports two ancillary detector physics measurements necessary for the cross section analyses: the measurements of the LArIAT electric eld and calorimetry constants. We developed a technique to measure the LArIAT electric eld using cathode-anode piercing tracks with cosmic data. We applied a new technique for the measurement of the calorimetry calibration constants based on the particles' momentum measurement. The negative pion and the positive kaon total hadronic cross measurements are the rst physics results of the LArIAT experiment and will be the basis for the future LArIAT measurements of pion and kaon cross sections in the exclusive channels. The outcome of these measurements will ultimately enable to quantify and reduce the systematic associated with the hadronic interaction models in neutrino-argon interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

Position Papers for the ASCR Workshop on Basic Research Needs in Quantum Computing and Networking

We invite community input in the form of two-page position papers that identify and discuss key challenges and opportunities in quantum computing and networking. In addition to providing an avenue for identifying workshop participants, these position papers will be used to shape the workshop agenda, identify panelists, and contribute to the workshop report. Position papers should not describe the authors’ current or planned research, contain material that should not be disclosed to the public, nor should they recommend specific solutions or discuss narrowly focused research topics. Rather, they should aim to improve the community’s shared understanding of the problem space, identify challenging research directions, and help to stimulate discussion.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

EIC ESR beam position monitors thermal and thermomechanical study preliminary design

The Electron Ion Collider (EIC) Electron Storage Ring (ESR) Beam Position Monitors (BPM) are designed to monitor the electron beam orbit position on a turn-by-turn and bunch-by-bunch basis in the vacuum chamber. Large variations in ESR fill pattern and bunch intensity imposes a large dynamic range on the BPM system design. And given the large ESR beam current - up to 2.5 A with 1160 x 20 nC bunches – the heating by synchrotron radiation (SR) and beam impedance is a significant concern. The high energy of the electrons – up to 18 GeV – leads to scat tering of the SR that produces high radiation doses and as sociated heating of structures away from the SR impact area. Because of this intense heating, and stringent position stability requirements, an in-depth engineering analysis was carried out. This paper will review the analysis made of the preliminary design and its main outcomes.

43 PARTICLE ACCELERATORS↗

DOE OSTI2025

Tracking and Positioning System for Floating Solar (CRADA Abstract)

The project goal is to develop a floating solar photovoltaics (FPV) tracking & position system that: (1) increases annual energy production of FPV projects by >10%, (2) lowers levelized cost of energy (LCOE) for FPV by >10%, and (3) leverages U.S. contract supply chain & manufacturing. The outcome of the project will be a certified tracking product that has undergone extensive field testing and is ready for commercial sales. The primary objectives for each budget period are: • BP1: Define product requirements, develop initial controls architecture and design other sub-components, complete small-scale pilot testing, install a larger-scale pilot, secure sites for commercial pilots, and develop the beta-version of a user portal. • BP2: complete control system and sub-component design, successful demonstration and testing at a commercial pilot, certification & bankability, finalize user portal, and complete various commercialization activities related to supply chain, customer acquisition, and sales. PNNL will provide support during both project phases for prototype development and testing of the controls architecture, software, and hardware components of the tracking and positioning system. PNNL will provide support during both project phases for prototype development and testing of the controls architecture, software, and hardware components of the tracking and positioning system. This effort represents PNNL’s first opportunity to support the floating solar photovoltaics (FPV) industry with capabilities, facilities, and personnel developed to contribute to the marine energy (e.g., wave and tidal energy) sector. This portfolio expansion leverages internal and DOE EERE investments and the growing visibility of PNNL-Sequim’s Marine and Coastal Research Laboratory (MCRL) and our marine research capabilities, in general. The development of effective and low-cost FPV platforms is a potential way to increase the nation’s set of tools for providing emission-free electricity without utilizing valuable terrestrial resources. Successful commercialization of such a project may lead to economic benefits through job creation, supply chain creation, and access to a cheaper source of electricity.

14 SOLAR ENERGY↗