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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 721 records · Page 40

Game-Theoretic Strategies for Cyber-Physical Infrastructures Under Component Disruptions

In this work, networked infrastructures of recursively defined systems composed of discrete cyber and physical components are considered. The components of basic systems at the finest levels can be disrupted by cyber or physical means, and can be reinforced to survive at certain costs. A problem of ensuring the infrastructure performance is formulated as a game between a provider and an attacker, who probabilistically choose components to reinforce and attack, respectively. The disruptions of this infrastructure are characterized using the aggregate failure correlation function that specifies the conditional failure probability of the infrastructure given the failure of an individual system at that level. The survival probabilities of basic systems satisfy simple product-form, first-order differential equations expressed in terms of the multiplier functions. The utility functions of the provider and attacker are composed of the reward and cost terms, both expressed in terms of the component reinforcement and attack probabilities. The Nash equilibrium of this game is characterized, along with the sensitivity functions of the survival probabilities of basic systems that highlight their dependence individually on the cost-benefit terms, the correlation functions, and the multiplier functions. These results are illustrated using simplified models of a distributed cloud servers infrastructure, a 5G data network infrastructure, a high performance computing federation, and a smart energy grid infrastructure.

42 ENGINEERING↗

Rewiring the specificity of extracytoplasmic function sigma factors

Significance Bacterial phenotypes require the concerted expression of multiple genes, usually coordinated by a transcriptional regulator. Although the functions of many genes in sequenced bacterial genomes can be inferred, the regulatory networks that coordinate their expression are only known in a few model systems. Using a bioinformatic and experimental approach, we solve the DNA-specificity code of extracytoplasmic function sigma factors (ECF σs), a major class of bacterial regulators. We develop and use a high-stringency pipeline to predict the genes regulated by 67% of ECF σs in >10,000 species, providing a comprehensive look at the role of a broadly distributed family of gene regulatory proteins. This conceptual and computational framework is potentially applicable to other bacterial regulators.

59 BASIC BIOLOGICAL SCIENCES↗

Enzymes in 3D: Synthesis, remodelling, and hydrolysis of cell wall (1,3;1,4)-β-glucans

Abstract Recent breakthroughs in structural biology have provided valuable new insights into enzymes involved in plant cell wall metabolism. More specifically, the molecular mechanism of synthesis of (1,3;1,4)-β-glucans, which are widespread in cell walls of commercially important cereals and grasses, has been the topic of debate and intense research activity for decades. However, an inability to purify these integral membrane enzymes or apply transgenic approaches without interpretative problems associated with pleiotropic effects has presented barriers to attempts to define their synthetic mechanisms. Following the demonstration that some members of the CslF sub-family of GT2 family enzymes mediate (1,3;1,4)-β-glucan synthesis, the expression of the corresponding genes in a heterologous system that is free of background complications has now been achieved. Biochemical analyses of the (1,3;1,4)-β-glucan synthesized in vitro, combined with 3-dimensional (3D) cryogenic-electron microscopy and AlphaFold protein structure predictions, have demonstrated how a single CslF6 enzyme, without exogenous primers, can incorporate both (1,3)- and (1,4)-β-linkages into the nascent polysaccharide chain. Similarly, 3D structures of xyloglucan endo-transglycosylases and (1,3;1,4)-β-glucan endo- and exohydrolases have allowed the mechanisms of (1,3;1,4)-β-glucan modification and degradation to be defined. X-ray crystallography and multi-scale modeling of a broad specificity GH3 β-glucan exohydrolase recently revealed a previously unknown and remarkable molecular mechanism with reactant trajectories through which a polysaccharide exohydrolase can act with a processive action pattern. The availability of high-quality protein 3D structural predictions should prove invaluable for defining structures, dynamics, and functions of other enzymes involved in plant cell wall metabolism in the immediate future.

59 BASIC BIOLOGICAL SCIENCES↗

Bioenergy sorghum’s deep roots: A key to sustainable biomass production on annual cropland

Abstract Bioenergy sorghum has high biomass yield potential, drought resilience, good nitrogen use efficiency, and a root system that contributes to the accumulation of soil organic carbon. In this study, field grown bioenergy sorghum root systems were analyzed during the growing season to characterize their depth, biomass, morphology, anatomy, and gene expression profiles. Bioenergy sorghum roots grew continuously during a 155‐day growing season producing ~175 nodal roots, accumulating ~7 Mg of dry biomass per hectare, and reaching >2 m deep in the soil profile. Nodal roots within 20 cm of the stem were 1–5 mm in diameter, whereas roots deeper in soil profiles were enriched in lateral roots with small diameters (~30–500 µm) enabling growth through soil macropores. In older field‐grown plants, roots with intact endodermal, vascular and inner root tissues were surrounded by degraded or aerenchyma‐filled epidermal and cortical cell layers. Transcriptome analysis of nodal, surface, and deep roots identified >2,500 differentially expressed genes involved in root growth, transport, adaptation, defense, and AMF–root interaction. Deep roots (180–240 cm) differentially expressed genes that regulate lateral root growth. Surface roots (0–20 cm) located mid‐row differentially expressed genes involved in nitrate transport, whereas ammonium transport genes were expressed in surface and deep roots and genes involved in phosphate transport were expressed in nodal, surface, and deep roots. Overall, bioenergy sorghum's long growing season enables root systems to grow deeper and accumulate more biomass than annual grain crops such as maize, attributes that could help restore annual cropland soil organic carbon levels and improve soil productivity. Deep roots active in nutrient transport are positioned to take‐up fertilizer leached deep into soil profiles mitigating potential nutrient run‐off. Bioenergy sorghum's large and deep root system is a key to sustainable production of biofuels, biopower, and bioproducts on annual cropland.

59 BASIC BIOLOGICAL SCIENCES↗

Quantum-inspired tempering for ground state approximation using artificial neural networks

A large body of work has demonstrated that parameterized artificial neural networks (ANNs) can efficiently describe ground states of numerous interesting quantum many-body Hamiltonians. However, the standard variational algorithms used to update or train the ANN parameters can get trapped in local minima, especially for frustrated systems and even if the representation is sufficiently expressive. We propose a parallel tempering method that facilitates escape from such local minima. This methods involves training multiple ANNs independently, with each simulation governed by a Hamiltonian with a different "driver" strength, in analogy to quantum parallel tempering, and it incorporates an update step into the training that allows for the exchange of neighboring ANN configurations. We study instances from two classes of Hamiltonians to demonstrate the utility of our approach using Restricted Boltzmann Machines as our parameterized ANN. The first instance is based on a permutation-invariant Hamiltonian whose landscape stymies the standard training algorithm by drawing it increasingly to a false local minimum. The second instance is four hydrogen atoms arranged in a rectangle, which is an instance of the second quantized electronic structure Hamiltonian discretized using Gaussian basis functions. We study this problem in a minimal basis set, which exhibits false minima that can trap the standard variational algorithm despite the problem’s small size. We show that augmenting the training with quantum parallel tempering becomes useful to finding good approximations to the ground states of these problem instances.

Albash, Tameem↗

Innovative Subsurface Learning and Hawaiian Exploration using Advanced Tomography (ISLAND HEAT) Phase 1 (Final Report)

The Innovative Subsurface Learning and Hawaiian Exploration using Advanced Tomography (ISLAND HEAT) project aims to leverage and enhance existing Hawai'i geothermal play fairway analysis (PFA) results and validate a conceptual model-driven, optimized, least-cost exploration and geophysical suite at a proven geothermal field with known permeability, the Puna Geothermal Venture, located in the Lower East Rift Zone. The abundance of geophysical scrutinization before, during, and after the 2018 Kilauea eruption at and around the broader Puna system offers a rare opportunity to elucidate geophysical expressions within a dynamic magmatic rift setting. Development of the methodology continues with its application at a second prospective site identified by the PFA, Mauna Kea, which serves as confirmation of the integrated approach.

15 GEOTHERMAL ENERGY↗

Human Liver Epithelial Cells (HuH7) Response to HCoV-229E Infection Epigenomics (ATAC-Seq) (ACS-DP4)

The purpose of this experiment was to evaluate how wild-type Human coronavirus strain 229E (HCoV-299E) infection alters chromatin accessibility in infected cells. Sample data was obtained from mock-infected cells, UV-inactivated virus treated cells, and replication competent HCoV-229E infected immortalized human liver cells (HuH7) at 24 hours post infection. Samples were processed using ATAC-seq methods for reported bar coded libraries. Sample data was acquired using an Illumina Hi-Seq 2500 sequencer system and further processed for ATAC-Seq expression analysis.

59 BASIC BIOLOGICAL SCIENCES↗

Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction

The use of potentially beneficial microorganisms in agriculture (microbial inoculants) has rapidly accelerated in recent years. For microbial inoculants to be effective as agricultural tools, these organisms must be able to survive and persist in novel environments while not destabilizing the resident community or spilling over into adjacent natural ecosystems. Despite the importance of propagule pressure to species introductions, few tools exist in microbial ecology to predict the outcomes of agricultural microbial introductions. Here, we adapt a macroecological propagule pressure model to a microbial scale and present an experimental approach for testing the role of propagule pressure in microbial inoculant introductions. We experimentally determined the risk-release relationship for an IAA-expressing Pseudomonas simiae inoculant in a model monocot system. We then used this relationship to simulate establishment outcomes under a range of application frequencies (propagule number) and inoculant concentrations (propagule size). Our simulations show that repeated inoculant applications may increase establishment, even when increased inoculant concentration does not alter establishment probabilities. Applying ecological modeling approaches like those presented here to microbial inoculants may aid their sustainable use and provide a monitoring tool for microbial inoculants.

59 BASIC BIOLOGICAL SCIENCES↗

Defining Detection Limits for Continuous Monitoring Systems for Methane Emissions at Oil and Gas Facilities

Networks of fixed-point continuous monitoring systems are becoming widely used in the detection and quantification of methane emissions from oil and gas facilities in the United States. Regulatory agencies and operators are developing performance metrics for these systems, such as minimum detection limits. Performance characteristics, such as minimum detection limits, would ideally be expressed in emission rate units; however, performance parameters such as detection limits for a continuous monitoring system (CMS) will depend on meteorological conditions, the characteristics of emissions at the site where the CMS is deployed, the positioning of CMS devices in relation to the emission sources, and the amount of time allowed for the CMS to detect an emission source. This means that certifying the performance of a CMS will require test protocols with well-defined emission rates and durations; initial protocols are now being used in field tests. Field testing results will vary, however, depending on meteorological conditions and the time allowed for detection. This work demonstrates methods for evaluating CMS performance characteristics using dispersion modeling and defines an approach for normalizing test results to standard meteorological conditions using dispersion modeling.

Chen, Qining (ORCID:0000000316908091)↗

Characterizing the Directionality of Gravitational Wave Emission from Matter Motions within Core-collapse Supernovae

Abstract We analyze the directional dependence of the gravitational wave (GW) emission from 15 3D neutrino radiation hydrodynamic simulations of core-collapse supernovae (CCSNe). Using spin weighted spherical harmonics, we develop a new analytic technique to quantify the evolution of the distribution of GW emission over all angles. We construct a physics-informed toy model that can be used to approximate GW distributions for general ellipsoid-like systems, and use it to provide closed form expressions for the distribution of GWs for different CCSN phases. Using these toy models, we approximate the protoneutron star (PNS) dynamics during multiple CCSN stages and obtain similar GW distributions to simulation outputs. When considering all viewing angles, we apply this new technique to quantify the evolution of preferred directions of GW emission. For nonrotating cases, this dominant viewing angle drifts isotropically throughout the supernova, set by the dynamical timescale of the PNS. For rotating cases, during core bounce and the following tens of milliseconds, the strongest GW signal is observed along the equator. During the accretion phase, comparable—if not stronger—GW amplitudes are generated along the axis of rotation, which can be enhanced by the low T /∣ W ∣ instability. We show two dominant factors influencing the directionality of GW emission are the degree of initial rotation and explosion morphology. Lastly, looking forward, we note the sensitive interplay between GW detector site and supernova orientation, along with its effect on detecting individual polarization modes.

Astronomy & Astrophysics↗

A Variational Method for the Optimization of Interplanetary Round-Trip Trajectories

The indirect method of the calculus of variations is used to optimize interplanetary round-trip trajectories for the case of a single, central, attracting body. The method of solution makes use of certain partial derivative properties of the Lagrangian multipliers associated with the Mayer formulation of the variational problem. This property of the multipliers allows the construction of mathematical expressions for certain other partial derivatives that must vanish when an optimum round trip has been found. These expressions are developed for the cases of propulsion systems using (1) fixed thrust and specific impulse or (2) variable thrust and constant exhaust jet power. Two numerical examples demonstrate how the analytical results may be applied to the solution of round-trip problems including (1) actual three-dimensional planetary positions and (2) planetocentric maneuvers.

VARIATIONAL CALCULUS↗

Generalized keesom potential

Field theoretic approach for generalization of expressions for adiabatic interaction between two rotating dipolar systems

ADIABATIC EQUATION↗

Evaluation of image quality in a Cassegrain-type telescope with an oscillating secondary mirror

A ray-trace analysis is described of aberrations and extreme rays of a Cassegrain-type telescope with a tilted secondary mirror. The work was motivated by the need to understand the factors limiting image quality and to assist in the design of secondary mirrors for three telescopes with oscillating secondary mirrors (OSM) used at Ames Research Center for high altitude infrared astronomy. The telescopes are a 31-cm-diameter Dall-Kirkham (elliptical primary, spherical secondary) flown aboard a Lear jet, a 71-cm balloon-borne Dall-Kirkham flown on the AIROscope gondola, and a 91-cm true Cassegrain (parabolic primary, hyperbolic secondary) flown aboard a C-141 jet transport. The optics for these telescopes were not designed specifically for OSM operation, but all have OSM's and all must be used with various detector configurations; therefore, a facility that evaluates the performance of a telescope for a given configuration is useful. The analytical expressions are summarized and results for the above systems are discussed. Details of the calculation and a discussion of the computer program are given in the appendices.

Erickson, E. F.↗

Operational calm and the optimum regulation of human working capacity

Muscle hardness measurements in a squeezing dynamometer test are interpreted for expressions of adjustment effects of the central nervous system in rapid response to a starting signal. It is shown that preliminary muscle tension leads to the transmission of inhibiting proprioceptive impulses to the nervous system centers and that the degree of pre-working changes depends on the individual's typological personality characteristics. Concentration of attention during the pre-working adjustment is considered the primary emotional factor that controls sensorimotor performance.

Ilin, Y. P.↗

Relative humidity from psychrometric data

Analytical equation for computing relative humidity as function of wet bulb temperature, dry bulb temperature, and atmospheric pressure is suitable for use with calculator or computer. Analytical expressions may be useful for chemical process control systems and building environmental control systems.

Putnam, T. W.↗

Symbolic manipulation techniques for vibration analysis of laminated elliptic plates

A computational scheme is presented for the free vibration analysis of laminated composite elliptic plates. The scheme is based on Hamilton's principle, the Rayleigh-Ritz technique and symmetry considerations and is implemented with the aid of the MACSYMA symbolic manipulation system. The MACYSMA system, through differentiation, integration, and simplification of analytic expressions, produces highly-efficient FORTRAN code for the evaluation of the stiffness and mass coefficients. Multiple use is made of this code to obtain not only the frequencies and mode shapes of the plate, but also the derivatives of the frequencies with respect to various material and geometric parameters.

Andersen, C. M.↗

A fully vectorized numerical solution of the incompressible Navier-Stokes equations

A vectorizable algorithm is presented for the implicit finite difference solution of the incompressible Navier-Stokes equations in general curvilinear coordinates. The unsteady Reynolds averaged Navier-Stokes equations solved are in two dimension and non-conservative primitive variable form. A two-layer algebraic eddy viscosity turbulence model is used to incorporate the effects of turbulence. Two momentum equations and a Poisson pressure equation, which is obtained by taking the divergence of the momentum equations and satisfying the continuity equation, are solved simultaneously at each time step. An elliptic grid generation approach is used to generate a boundary conforming coordinate system about an airfoil. The governing equations are expressed in terms of the curvilinear coordinates and are solved on a uniform rectangular computational domain. A checkerboard SOR, which can effectively utilize the computer architectural concept of vector processing, is used for iterative solution of the governing equations.

Patel, N.↗

First 3 years of operation of RIACS (Research Institute for Advanced Computer Science) (1983-1985)

The focus of the Research Institute for Advanced Computer Science (RIACS) is to explore matches between advanced computing architectures and the processes of scientific research. An architecture evaluation of the MIT static dataflow machine, specification of a graphical language for expressing distributed computations, and specification of an expert system for aiding in grid generation for two-dimensional flow problems was initiated. Research projects for 1984 and 1985 are summarized.

Denning, P. J.↗