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At least 721 records · Page 40

FIRST DETECTION OF ULTRAVIOLET EMISSION FROM A DETACHED DUST SHELL: GALAXY EVOLUTION EXPLORER OBSERVATIONS OF THE CARBON ASYMPTOTIC GIANT BRANCH STAR U Hya

We present the discovery of an extended ring of ultraviolet (UV) emission surrounding the asymptotic giant branch (AGB) star U Hya in archival observations performed by the Galaxy Evolution Explorer. This is the third discovery of extended UV emission from a carbon AGB star and the first from an AGB star with a detached shell. From imaging and photometric analysis of the FUV and NUV images, we determined that the UV ring has a radius of ∼110'', thus indicating that the emitting material is likely associated with the detached shell seen in the infrared. We find that scattering of the central point source of NUV and FUV emission by the dust shell is negligible. Moreover, we find that scattering of the interstellar radiation field by the dust shell can contribute at most ∼10% of the FUV flux. Morphological and photometric evidence suggests that shocks caused by the star's motion through space and, possibly, shock-excited H{sub 2} molecules are the most likely origins of the UV flux. In contrast to previous examples of extended UV emission from AGB stars, the extended UV emission from U Hya does not show a bow-shock-like structure, which is consistent with a lower space velocity and lower interstellar medium density. This suggests the detached dust shell is the source of the UV-emitting material and can be used to better understand the formation of detached shells.

79 ASTRONOMY AND ASTROPHYSICS↗

STRUCTURE OF THE INTERSTELLAR BOUNDARY EXPLORER RIBBON FROM SECONDARY CHARGE-EXCHANGE AT THE SOLAR–INTERSTELLAR INTERFACE

In 2009, the Interstellar Boundary Explorer discovered a bright “ribbon” of energetic neutral atom (ENA) flux in the energy range ≤0.4–6 keV, encircling a large portion of the sky. This observation was not previously predicted by any models or theories, and since its discovery, it has been the subject of numerous studies of its origin and properties. One of the most studied mechanisms for its creation is the “secondary ENA” process. Here, solar wind ions, neutralized by charge-exchange with interstellar atoms, propagate outside the heliopause; experience two charge-exchange events in the dense outer heliosheath; and then propagate back inside the heliosphere, preferentially in the direction perpendicular to the local interstellar magnetic field. This process has been extensively analyzed using state-of-the-art modeling and simulation techniques, but it has been difficult to visualize. In this Letter, we show the three-dimensional structure of the source of the ribbon, providing a physical picture of the spatial and energy scales over which the secondary ENA process occurs. These results help us understand how the ribbon is generated and further supports a secondary ENA process as the leading ribbon source mechanism.

79 ASTRONOMY AND ASTROPHYSICS↗

Exploring few and single layer CrPS 4 with near-field infrared spectroscopy

Abstract We combine synchrotron-based near-field infrared spectroscopy and first principles lattice dynamics calculations to explore the vibrational response of CrPS 4 in bulk, few-, and single-layer form. Analysis of the mode pattern reveals a C 2 polar + chiral space group, no symmetry crossover as a function of layer number, and a series of non-monotonic frequency shifts in which modes with significant intralayer character harden on approach to the ultra-thin limit whereas those containing interlayer motion or more complicated displacement patterns soften and show inflection points or steps. This is different from MnPS 3 where phonons shift as 1/size 2 and are sensitive to the three-fold rotation about the metal center that drives the symmetry crossover. We discuss these differences as well as implications for properties such as electric polarization in terms of presence or absence of the P–P dimer and other aspects of local structure, sheet density, and size of the van der Waals gap.

36 MATERIALS SCIENCE↗

Exploring dielectric properties in atomistic models of amorphous boron nitride

Abstract We report a theoretical study of dielectric properties of models of amorphous Boron Nitride, using interatomic potentials generated by machine learning. We first perform first-principles simulations on small (about 100 atoms in the periodic cell) sample sizes to explore the emergence of mid-gap states and its correlation with structural features. Next, by using a simplified tight-binding electronic model, we analyse the dielectric functions for complex three dimensional models (containing about 10.000 atoms) embedding varying concentrations of sp 1 , sp 2 and sp 3 bonds between B and N atoms. Within the limits of these methodologies, the resulting value of the zero-frequency dielectric constant is shown to be influenced by the population density of such mid-gap states and their localization characteristics. We observe nontrivial correlations between the structure-induced electronic fluctuations and the resulting dielectric constant values. Our findings are however just a first step in the quest of accessing fully accurate dielectric properties of as-grown amorphous BN of relevance for interconnect technologies and beyond.

Materials Science↗

Less than the sum of its parts: the dust-corrected H α luminosity of star-forming galaxies explored at different spatial resolutions with MaNGA and MUSE

ABSTRACT The H α and H β emission-line luminosities measured in a single integrated spectrum are affected in non-trivial ways by point-to-point variations in dust attenuation in a galaxy. This work investigates the impact of this variation when estimating global H α luminosities corrected for the presence of dust by a global Balmer decrement. Analytical arguments show that the dust-corrected H α luminosity is always underestimated when using the global H α/H β flux ratio to correct for dust attenuation. We measure this effect on 156 face-on star-forming galaxies from the Mapping Nearby Galaxies at APO (MaNGA) survey. At 1–2 kpc spatial resolution, the effect is small but systematic, with the integrated dust-corrected H α luminosity underestimated by 2–4 per cent (and typically not more than by 10 per cent), and depends on the specific star formation rate of the galaxy. Given the spatial resolution of MaNGA, these are lower limits for the effect. From Multi Unit Spectroscopic Explorer (MUSE) observations of NGC 628 with a resolution of 36 pc, we find the discrepancy between the globally and the point-by-point dust-corrected H α luminosity to be 14 ± 1 per cent, which may still underestimate the true effect. We use toy models and simulations to show that the true difference depends strongly on the spatial variance of the H α/H β flux ratio, and on the slope of the relation between H αluminosity and dust attenuation within a galaxy. Larger samples of higher spatial resolution observations are required to quantify the dependence of this effect as a function of galaxy properties.

Vale Asari, N.↗

The Completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: exploring the halo occupation distribution model for emission line galaxies

We study the modelling of the halo occupation distribution (HOD) for the eBOSS DR16 emission line galaxies (ELGs). Motivated by previous theoretical and observational studies, we consider different physical effects that can change how ELGs populate haloes. We explore the shape of the average HOD, the fraction of satellite galaxies, their probability distribution function (PDF), and their density and velocity profiles. Our baseline HOD shape was fitted to a semi-analytical model of galaxy formation and evolution, with a decaying occupation of central ELGs at high halo masses. We consider Poisson and sub/super-Poissonian PDFs for satellite assignment. We model both Navarro–Frenk–White and particle profiles for satellite positions, also allowing for decreased concentrations. We model velocities with the virial theorem and particle velocity distributions. Additionally, we introduce a velocity bias and a net infall velocity. We study how these choices impact the clustering statistics while keeping the number density and bias fixed to that from eBOSS ELGs. The projected correlation function, w p , captures most of the effects from the PDF and satellites profile. The quadrupole, ξ 2 , captures most of the effects coming from the velocity profile. We find that the impact of the mean HOD shape is subdominant relative to the rest of choices. Here, we fit the clustering of the eBOSS DR16 ELG data under different combinations of the above assumptions. The catalogues presented here have been analysed in companion papers, showing that eBOSS RSD+BAO measurements are insensitive to the details of galaxy physics considered here. These catalogues are made publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗

Beyond the hubble sequence – exploring galaxy morphology with unsupervised machine learning

We explore unsupervised machine learning for galaxy morphology analyses using a combination of feature extraction with a vector-quantized variational autoencoder (VQ-VAE) and hierarchical clustering (HC). We propose a new methodology that includes: (1) consideration of the clustering performance simultaneously when learning features from images; (2) allowing for various distance thresholds within the HC algorithm; (3) using the galaxy orientation to determine the number of clusters. This set-up provides 27 clusters created with this unsupervised learning that we show are well separated based on galaxy shape and structure (e.g. Sérsic index, concentration, asymmetry, Gini coefficient). These resulting clusters also correlate well with physical properties such as the colour–magnitude diagram, and span the range of scaling relations such as mass versus size amongst the different machine-defined clusters. When we merge these multiple clusters into two large preliminary clusters to provide a binary classification, an accuracy of $\sim 87{{\ \rm per\ cent}}$ is reached using an imbalanced data set, matching real galaxy distributions, which includes 22.7 per cent early-type galaxies and 77.3 per cent late-type galaxies. Comparing the given clusters with classic Hubble types (ellipticals, lenticulars, early spirals, late spirals, and irregulars), we show that there is an intrinsic vagueness in visual classification systems, in particular galaxies with transitional features such as lenticulars and early spirals. Based on this, the main result in this work is not how well our unsupervised method matches visual classifications and physical properties, but that the method provides an independent classification that may be more physically meaningful than any visually based ones.

79 ASTRONOMY AND ASTROPHYSICS↗

Exploring the contamination of the DES-Y1 cluster sample with SPT-SZ selected clusters

ABSTRACT We perform a cross validation of the cluster catalogue selected by the red-sequence Matched-filter Probabilistic Percolation algorithm (redMaPPer) in Dark Energy Survey year 1 (DES-Y1) data by matching it with the Sunyaev–Zel’dovich effect (SZE) selected cluster catalogue from the South Pole Telescope SPT-SZ survey. Of the 1005 redMaPPer selected clusters with measured richness $\hat{\lambda }\gt 40$ in the joint footprint, 207 are confirmed by SPT-SZ. Using the mass information from the SZE signal, we calibrate the richness–mass relation using a Bayesian cluster population model. We find a mass trend λ ∝ MB consistent with a linear relation (B ∼ 1), no significant redshift evolution and an intrinsic scatter in richness of σλ = 0.22 ± 0.06. By considering two error models, we explore the impact of projection effects on the richness–mass modelling, confirming that such effects are not detectable at the current level of systematic uncertainties. At low richness SPT-SZ confirms fewer redMaPPer clusters than expected. We interpret this richness dependent deficit in confirmed systems as due to the increased presence at low richness of low-mass objects not correctly accounted for by our richness-mass scatter model, which we call contaminants. At a richness $\hat{\lambda }=40$, this population makes up ${\gt}12{{\ \rm per\ cent}}$ (97.5 percentile) of the total population. Extrapolating this to a measured richness $\hat{\lambda }=20$ yields ${\gt}22{{\ \rm per\ cent}}$ (97.5 percentile). With these contamination fractions, the predicted redMaPPer number counts in different plausible cosmologies are compatible with the measured abundance. The presence of such a population is also a plausible explanation for the different mass trends (B ∼ 0.75) obtained from mass calibration using purely optically selected clusters. The mean mass from stacked weak lensing (WL) measurements suggests that these low-mass contaminants are galaxy groups with masses ∼3–5 × 1013 M⊙ which are beyond the sensitivity of current SZE and X-ray surveys but a natural target for SPT-3G and eROSITA.

79 ASTRONOMY AND ASTROPHYSICS↗

Subaru High-z Exploration of Low-Luminosity Quasars (SHELLQs) – XV. Constraining the cosmic reionization at 5.5 < z < 7

ABSTRACT Revealing the cosmic hydrogen reionization history is one of the main goals of the modern cosmology. z > 5 quasars (QSOs) have been used as back-lights to investigate the evolution of the intervening intergalactic medium (IGM) during the cosmic reionization since their first discovery. However, due to the small population of luminous QSOs (∼130 QSOs known to date), a tight constraint on the reionization history has not yet been placed. In this work, we aim to tighten the constraint using the 93 QSOs (5.5 < z < 7.1) recently discovered in the Subaru High-z Exploration of Low-Luminosity Quasars (SHELLQS) project. This is the largest QSO sample used to constrain the epoch of reionization. We measure the mean IGM Ly α transmission and the QSO near-zone size using the UV spectra of these QSOs. The mean IGM Ly α transmission rises above zero at z ≲ 6, indicating the end of the reionization. The near-zone sizes of the SHELLQs QSOs are consistent with sizes spanned by QSOs of lifetime tq ∼ 1–100 Myr in simulations. Due to the scatter created by the low signal-to-noise spectra and large Ly α redshift uncertainty, we cannot conclude whether the redshift evolution of the near-zone size is affected by the reionization effect.

Lu, Ting-Yi (ORCID:0000000249656524)↗

Exploring the dependence of gas cooling and heating functions on the incident radiation field with machine learning

ABSTRACT Gas cooling and heating functions play a crucial role in galaxy formation. But, it is computationally expensive to exactly compute these functions in the presence of an incident radiation field. These computations can be greatly sped up by using interpolation tables of pre-computed values, at the expense of making significant and sometimes even unjustified approximations. Here, we explore the capacity of machine learning to approximate cooling and heating functions with a generalized radiation field. Specifically, we use the machine learning algorithm XGBoost to predict cooling and heating functions calculated with the photoionization code cloudy at fixed metallicity, using different combinations of photoionization rates as features. We perform a constrained quadratic fit in metallicity to enable a fair comparison with traditional interpolation methods at arbitrary metallicity. We consider the relative importance of various photoionization rates through both a principal component analysis (PCA) and calculation of SHapley Additive exPlanation (shap) values for our XGBoost models. We use feature importance information to select different subsets of rates to use in model training. Our XGBoost models outperform a traditional interpolation approach at each fixed metallicity, regardless of feature selection. At arbitrary metallicity, we are able to reduce the frequency of the largest cooling and heating function errors compared to an interpolation table. We find that the primary bottleneck to increasing accuracy lies in accurately capturing the metallicity dependence. This study demonstrates the potential of machine learning methods such as XGBoost to capture the non-linear behaviour of cooling and heating functions.

79 ASTRONOMY AND ASTROPHYSICS↗

Exploring modified gravity: constraints on the μ and Σ parametrization with WMAP , ACT, and SPT

ABSTRACT The cosmic acceleration problem remains one of the most significant challenges in cosmology. One of the proposed solutions to this problem is the modification of gravity on large scales. In this paper, we explore the well-known μ–Σ parametrization scenarios and confront them with observational data, including the cosmic microwave background (CMB) radiation from the Wilkinson Microwave Anisotropy Probe (WMAP), Atacama Cosmology Telescope (ACT), and South Pole Telescope (SPT), as well as large-scale structure data from the Sloan Digital Sky Survey (SDSS; baryon acoustic oscillation + redshift-space distortion) and Pantheon supernova (SN) catalogue. We employ a Bayesian framework to constrain the model parameters and discuss the implications of our results on the viability of modified gravity theories. Our analysis reveals the strengths and limitations of the μ–Σ parametrization and provides valuable insights into the nature of gravity on cosmological scales. From the joint analysis of the ACT + WMAP + SDSS + SN, we find μ0 − 1 = 0.02 ± 0.19 and Σ0 − 1 = 0.021 ± 0.068 at 68 per cent confidence level (CL). In light of the SPT + WMAP + SDSS + SN, we find μ0 − 1 = 0.07 ± 0.18 and $\Sigma _0 -1 = -0.009^{+0.078}_{-0.11}$ at 68 per cent CL. In all the analyses carried out, we do not find any deviations from the theory of general relativity. Our results represent an observational update on the well-known μ–Σ parametrization in view of current CMB data, independent of and competitive with the constraints obtained with the Planck data.

79 ASTRONOMY AND ASTROPHYSICS↗

Evolutionary Analyses of Gene Expression Divergence in Panicum hallii : Exploring Constitutive and Plastic Responses Using Reciprocal Transplants

Abstract The evolution of gene expression is thought to be an important mechanism of local adaptation and ecological speciation. Gene expression divergence occurs through the evolution of cis- polymorphisms and through more widespread effects driven by trans-regulatory factors. Here, we explore expression and sequence divergence in a large sample of Panicum hallii accessions encompassing the species range using a reciprocal transplantation experiment. We observed widespread genotype and transplant site drivers of expression divergence, with a limited number of genes exhibiting genotype-by-site interactions. We used a modified FST–QST outlier approach (QPC analysis) to detect local adaptation. We identified 514 genes with constitutive expression divergence above and beyond the levels expected under neutral processes. However, no plastic expression responses met our multiple testing correction as QPC outliers. Constitutive QPC outlier genes were involved in a number of developmental processes and responses to abiotic environments. Leveraging earlier expression quantitative trait loci results, we found a strong enrichment of expression divergence, including for QPC outliers, in genes previously identified with cis and cis–environment interactions but found no patterns related to trans-factors. Population genetic analyses detected elevated sequence divergence of promoters and coding sequence of constitutive expression outliers but little evidence for positive selection on these proteins. Our results are consistent with a hypothesis of cis-regulatory divergence as a primary driver of expression divergence in P. hallii.

3′ TagSeq↗

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research-focused web portal. We report substantial additions to the tools and visualization features available at RCSB.org, which now delivers more than 227000 experimentally determined atomic-level three-dimensional (3D) biostructures stored in the global PDB archive alongside more than 1 million Computed Structure Models (CSMs) of proteins (including models for human, model organisms, select human pathogens, crop plants and organisms important for addressing climate change). In addition to providing support for 3D structure motif searches with user-provided coordinates, new features highlighted herein include query results organized by redundancy-reduced Groups and summary pages that facilitate exploration of groups of similar proteins. Newly released programmatic tools are also described, as are enhanced training opportunities.

Burley, Stephen K.↗

PDB‐101: Molecular Explorations through Biology and Medicine

PDB‐101 is an online portal for teachers, students, and the general public to promote exploration of the structural biology of proteins and nucleic acids ( pdb101.rcsb.org ). Learning about the diverse shapes and functions of these biological macromolecules helps to understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease to biological energy. Why PDB‐101? Researchers around the world are studying these molecules at the atomic level. These 3D structures are freely available at the Protein Data Bank (PDB), the central storehouse of biomolecular structures. This website builds introductory materials to help beginners get started in the basics of biomolecular structure and function (“101”, as in an entry level course) as well as resources for extended learning. Since 2011, PDB‐101 has been developed by the RCSB PDB , a global resource for the advancement of research and education in biology and medicine. Along with our Worldwide PDB collaborators, RCSB PDB curates, annotates, and makes publicly available the PDB data deposited by scientists around the globe. The RCSB PDB then provides a window to these data through a rich online resource with powerful searching, reporting, and visualization tools for researchers. This information is then streamlined for students and teachers at PDB‐101. Features include the ongoing Molecule of the Month series, educational materials such as paper models, posters, molecular animations, educational curricula and more. The section “Guide to Understanding PDB Data” is a primer for detailed PDB‐specific information: PDB Data, Visualizing Structures, Reading Coordinate Files, scientific methods for structure determination, and more. PDB‐101 also runs annual Video Challenges for high school students. Participants create short videos that tell molecular stories that connect structural biology and medicine. Previous topics have included HIV/AIDS, diabetes, and antimicrobial resistance. The 2022 challenge will focus on Molecular Mechanisms of Cancer. PDB‐101 activities are evaluated using user surveys, feedback from in‐person activities, and website analytics. In 2020, PDB‐101 hosted >850,000 users and >2.6 million page views.

Zardecki, Christine↗

Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

The origin of eukaryotes represents an enigmatic puzzle, which is still lacking a number of essential pieces. Whereas it is currently accepted that the process of eukaryogenesis involved an interplay between a host cell and an alphaproteobacterial endosymbiont, we currently lack detailed information regarding the identity and nature of these players. A number of studies have provided increasing support for the emergence of the eukaryotic host cell from within the archaeal domain of life, displaying a specific affiliation with the archaeal TACK superphylum. Recent studies have shown that genomic exploration of yet-uncultivated archaea, the so-called archaeal 'dark matter', is able to provide unprecedented insights into the process of eukaryogenesis. Here, we provide an overview of state-of-the-art cultivation-independent approaches, and demonstrate how these methods were used to obtain draft genome sequences of several novel members of the TACK superphylum, including Lokiarchaeum, two representatives of the Miscellaneous Crenarchaeotal Group (Bathyarchaeota), and a Korarchaeum -related lineage. In conclusion, the maturation of cultivation-independent genomics approaches, as well as future developments in next-generation sequencing technologies, will revolutionize our current view of microbial evolution and diversity, and provide profound new insights into the early evolution of life, including the enigmatic origin of the eukaryotic cell.

59 BASIC BIOLOGICAL SCIENCES↗

Exploring the role of 𝑑* hexaquarks on quark deconfinement and hybrid stars

We investigate the impact of the d*( 2380) hexaquark on the equation of state (EOS) of dense matter within hybrid stars (HSs) using the chiral mean-field model (CMF). The hexaquark is included as a new degree of freedom in the hadronic phase, and its influence on the deconfinement transition to quark matter is explored. We reparametrize the CMF model to ensure compatibility with recent astrophysical constraints, including the observation of massive pulsars and gravitational wave events. Our results show that the presence of d* significantly modifies the EOS, leading to a softening at high densities and a consequent reduction in the predicted maximum stellar masses. Furthermore, we examine the possibility of a first-order deconfinement phase transition within the context of the extended stability branch of slow stable HSs (SSHSs). We find that the presence of hexaquarks can delay the deconfinement phase transition and reduce the associated energy density gap, affecting the structure and stability of HSs. Our results suggest that, as the hexaquark appearance tends to destabilize stellar configurations, fine-tuning of model parameters is required to obtain both the presence of hexaquarks and quark deconfinement in these systems. In this scenario, the SSHS branch plays a crucial role in obtaining HSs with hexaquarks that satisfy current astrophysical constraints. Our work provides new insights into the role of exotic particles like d* in dense matter and the complex interplay between hadronic and quark degrees of freedom inside compact stellar objects.

Nuclear astrophysics↗

Exploring nonmultiplicativity in the geometric measure of entanglement

The geometric measure of entanglement (GME) quantifies how close a multipartite quantum state is to the set of separable states under the Hilbert-Schmidt inner product. The GME can be nonmultiplicative, meaning that the closest product state to two states is entangled across subsystems. In this work, we explore the GME in two families of states: those that are invariant under bilateral orthogonal (𝑂⊗𝑂) transformations, and mixtures of singlet states. In both cases, a region of GME nonmultiplicativity is identified around the antisymmetric projector state. We employ state-of-the-art numerical optimization methods and models to quantitatively analyze nonmultiplicativity in these states for 𝑑=3. Here, we also investigate a constrained form of GME that measures closeness to the set of real product states and show that this measure can be nonmultiplicative even for real separable states.

Quantum correlations in quantum information↗

Exploring the keV-scale physics potential of CUORE

We present the analysis techniques developed to explore the keV-scale energy region of the Cryogenic Underground Observatory for Rare Events (CUORE) experiment, based on more than 2 metric ton yr of data collected over five years. By prioritizing a stricter selection over a larger exposure, we are able to optimize data selection for thresholds at 10 keV and 3 keV with 691 kg yr and 11 kg yr of data, respectively. We study how the performance varies among the 988-detector array with different detector characteristics and data-taking conditions. We achieve an average baseline resolution of 2.54 ±0.14 keV FWHM and 1.18 ±0.02 keV FWHM for the data selection at 10 keV and 3 keV, respectively. The analysis methods employed reduce the overall background by about an order of magnitude, reaching 2.06±0.05 counts/(keV kg days) and 16±2 counts/(keV kg days) at the thresholds of 10 keV and 3 keV. We evaluate for the first time the near-threshold reconstruction efficiencies of the CUORE experiment, and find these to be 50 ±2% and 26 ±4% at 10 keV and 3 keV, respectively. This analysis provides crucial insights into rare decay studies, new physics searches, and keV-scale background modeling with CUORE. We demonstrate that ton-scale cryogenic calorimeters can operate across a wide energy range, from keV to MeV, establishing their scalability as versatile detectors for rare event and dark matter physics. These findings also inform the optimization of future large mass cryogenic calorimeters to enhance the sensitivity to low-energy phenomena.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗