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At least 73 records · Page 4

Relationship Between Equilibrium Forms of Lysozyme Crystals and Precipitant Anions

Molecular forces, such as electrostatic, hydrophobic, van der Waals and steric forces, are known to be important in determining protein interactions. These forces are affected by the solution conditions and changing the pH, temperature or the ionic strength of the solution can sharply affect protein interactions. Several investigations of protein crystallization have shown that this process is also strongly dependent on solution conditions. As the ionic strength of the solution is increased, the initially soluble protein may either crystallize or form an amorphous precipitate at high ionic strengths. Studies done on the model protein hen egg white lysozyme have shown that different crystal forms can be easily and reproducibly obtained, depending primarily on the anion used to desolubilize the protein. In this study we employ pyranine to probe the effect of various anions on the water structure. Additionally, lysozyme crystallization was carried out at these conditions and the crystal form was determined by X-ray crystallography. The goal of the study was to understand the physico-chemical basis for the effect of changing the anion concentration on the equilibrium form of lysozyme crystals. It will also verify the hypothesis that the anions, by altering the bulk water structure in the crystallizing solutions, alter the surface energy of the between the crystal faces and the solution and, consequently, the equilibrium form of the crystals.

Nadarajah, Arunan↗

Molecular Structure of Adsorbed Water Phases in Silica Nanopores

The adsorption of water vapor in silica nanopores with different pore morphologies and surface hydrophilicities was studied to quantify the densities and thicknesses of the water sorption layers and deduce their molecular structures. Water adsorption to surface hydroxyls is described by a multilayer sorption model. At low pressure, the water adsorption isotherms are largely independent of pore size and the adsorbed amounts scale with the surface hydroxyl density. Adsorbed-phase densities corresponding to the adsorption of two water molecules per surface hydroxyl group are found in the first adsorbed water layer for a wide range of surface hydroxyl densities. The densities and layer thickness values found in narrow pores indicate that patchy adsorbed layers form if not enough water molecules exist for a full layer, which coexist with dry pore surface regions. This behavior indicates cooperative adsorption effects, i.e., a preference for the formation of hydrogen bonds between water molecules bound to surface hydroxyls. In narrow pores, pore condensation limits further growth of the sorption layer, and in larger pores and at the planar quartz surface, a second adsorbed water layer is formed, which can hold up to approximately 4 additional water molecules per surface hydroxyl group. The water molecules in these thicker adsorption layers arrange such that the sorption layer density is similar to the bulk water density. Pore confinement limitations on the sorption layers are observed in pores with radii of as large as 8 nm. Molecular dynamics modeling reveals two preferential orientations for water molecules adsorbing to surface hydroxyl groups and suggests an intralayer structuring in the adsorbed monolayer. Furthermore, adsorbed water molecules in the sorption layer are bonded to the surface hydroxyl group via the donation and acceptance of hydrogen bonds.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Molecular dynamics studies of simple membrane-water interfaces: Structure and functions in the beginnings of cellular life

Molecular dynamics computer simulations of the structure and functions of a simple membrane are performed in order to examine whether membranes provide an environment capable of promoting protobiological evolution. Our model membrane is composed of glycerol 1-monooleate. It is found that the bilayer surface fluctuates in time and space, occasionally creating thinning defects in the membrane. These defects are essential for passive transport of simple ions across membranes because they reduce the Born barrier to this process by approximately 40%. Negative ions are transferred across the bilayer more readily than positive ions due to favorable interactions with the electric field at the membrane-water interface. Passive transport of neutral molecules is, in general, more complex than predicted by the solubility-diffusion model. In particular, molecules which exhibit sufficient hydrophilicity and lipophilicity concentrate near membrane surfaces and experience 'interfacial resistance' to transport. The membrane-water interface forms an environment suitable for heterogeneous catalysis. Several possible mechanisms leading to an increase of reaction rates at the interface are discussed. We conclude that vesicles have many properties that make them very good candidates for earliest protocells. Some potentially fruitful directions of experimental and theoretical research on this subject are proposed.

Pohorille, Andrew↗

Thematic mapping, land use, geological structure and water resources in central Spain

The author has identified the following significant results. The images can be positioned in an absolute reference system (geographical coordinates or polar stereographic coordinates) by means of their marginal indicators. By digital analysis of LANDSAT data and geometric positioning of pixels in UTM projection, accuracy was achieved for corrected MSS information which could be used for updating maps at scale 1:200,000 or smaller. Results show that adjustment of the UTM grid was better obtained by a first order, or even second order, algorithm of geometric correction. Digital analysis of LANDSAT data from the Madrid area showed that this line of study was promising for automatic classification of data applied to thematic cartography and soils identification.

Delascuevas, N.↗

Moist convection and the vertical structure and water abundance of Jupiter's atmosphere

The cumulative effects of an ensemble of moist convective plumes on a conditionally unstable atmosphere are predicted by a model of moist convection on Jupiter in which the heating/cooling and drying/moistening of the environment occur through (1) compensating subsidence, (2) detrainment of updraft air at cloud tops, and (3) the evaporation and melting of falling condensate. Parahydrogen is transported as a passive tracer. Pure moist convective, mixed moist-dry convective, and primarily dry convective regimes are possible, depending on the assumed deep-water abundance, efficiency of condensate evaporation, and initial temperature profile.

Del Genio, Anthony D.↗

Comparison of the structure of harmonic aqueous glasses and liquid water

Glassy structures of water were generated by rapidly quenching configurations of 64 and 343 molecules of liquid water; and the potential energy was then expanded through quadratic order around local minima generated in this way, and the properties of the resulting harmonic system were calculated. The results obtained were used to test the degree to which the structure of liquid water is similar to that of a harmonic aqueous glass. The radial distribution functions for the glass were found to be remarkably similar to those of the liquid. Translational modes were found to be almost entirely responsible for the broadening of the oxygen-oxygen radial distribution function of the quenched configuration, and also primarily responsible for the broadening of other radial distribution functions.

Pohorille, Andrew↗

Electric Field Effects on Water and Ion Structure and Diffusion at the Orthoclase (001)–Water Interface

Understanding the electrochemical properties of mineral–water interfaces tends to rely upon electrical double layer (EDL) models, but these models are based on the assumption that electrostatic equilibrium is constantly maintained. In reality, interfacial reactions, ion diffusion, and their electrochemical signatures are based in nonequilibrium conditions of locally or globally imbalanced electrical fields where current EDL models have limited purview. In this work, we performed molecular dynamics (MD) simulations of the orthoclase (001) surface in contact with a 1 M NaCl aqueous solution under various electric fields, to explore the interplay between EDL structure and dynamics when perturbed by electric fields of different direction and strength, by confinement, and by different distributions of structural surface charge. The simulations showed that confinement between two opposing (001) surfaces led to the development of an induced field when the applied field was perpendicular to the surfaces and, as a result, to ionic diffusion coefficients that were independent of electric field strength. In contrast, when the applied field was parallel to the surfaces, confinement resulted in ionic diffusion coefficients that were more strongly dependent on the magnitude of the electric field than in bulk water. Differences in the density and distribution of aluminol groups on the two surfaces had a significant impact on how the interfacial structure and dynamics varied in the presence of an electric field. Notably, these differences resulted in an electro-osmotic flow with opposite directions at the two surfaces under parallel applied electric field. Overall, the MD simulations highlighted the importance of considering atomic-level structure and heterogeneities when developing models of the electrochemical properties of mineral–water interfaces.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

An impact-induced terrestrial atmosphere and iron-water reactions during accretion of the Earth

Shock wave data and theoretical calculations were used to derive models of an impact-generated terrestrial atmosphere during accretion of the Earth. The models showed that impacts of infalling planetesimals not only provided the entire budget of terrestrial water but also led to a continuous depletion of near-surface layers of water-bearing minerals of their structural water. This resulted in a final atmospheric water reservoir comparable to the present day total water budget of the Earth. The interaction of metallic iron with free water at the surface of the accreting Earth is considered. We carried out model calcualtions simulating these processes during accretion. It is assumed that these processes are the prime source of the terrestrial FeO component of silicates and oxides. It is demonstrated that the iron-water reaction would result in the absence of atmospheric/hydrospheric water, if homogeneous accretion is assumed. In order to obtain the necessary amount of terrestrial water, slightly heterogeneous accretion with initially 36 wt% iron planetesimals, as compared with a homogeneous value of 34 wt% is required.

Lange, M. A.↗

Galileo Space Probe News Conference

This NASA Kennedy Space Center (KSC) video release presents Part 1 of a press conference regarding the successful entry of the Galileo Space Probe into Jupiter's atmosphere. The press conference panel is comprised of twelve principal investigators and project scientists that oversee the Galileo mission. Among these panelists, William J. O'Neil (Jet Propulsion Lab.) begins the video praising all of the scientists that worked on the orbiter mission. He then presents a visual overview of Galileo's overall mission trajectory and schedule. Marcie Smith (NASA Ames Research Center) then describes the Galileo Probe mission and the overall engineering and data acquisition aspects of the Probe's Jupiter atmospheric entry. Dr. Richard Young (NASA Ames Research Center) follows with a brief scientific overview, describing the measurements of the atmospheric composition as well as the instruments that were used to gather the data. Atmospheric pressure, temperature, density, and radiation levels of Jupiter were among the most important parameters measured. It is explained that these measurements would be helpful in determining among other things, the overall dynamic meteorology of Jupiter. A question and answer period follows the individual presentations. Atmospheric thermal structure, water abundances, wind profiles, radiation, cloud structure, chemical composition, and electricity are among the topics discussed. Parts 2 and 3 of the press conference can be found in document numbers NONP-NASA-VT-2000001074, and NONP-NASA-VT-2000001075.

Source record↗

Hydration and Restructuring of Polar Polymer Interfaces: Implications in Antifouling and Responsive Materials

Manipulating polymer interfaces is crucial for understanding how structure influences function in applications spanning biofouling prevention to energy storage. Moreover, observing how polymers adapt their microscopic structure to changes in their local environment can reveal essential properties that govern their performance in such applications, providing key insights into how to design more effective interfaces. Here, in this study, a series of “grafting-from” polymer brushes with side chains varying in charge, are probed by sum frequency generation (SFG) and modeled using all-atom molecular dynamics (MD) simulations to elucidate how chemical makeup and charge mediate interfacial restructuring in dry versus hydrated states. Results show that charge, in progressing from nonpolar to cationic to zwitterionic, results in dramatic changes in interfacial structure and overall hydration. While net neutral systems, regardless of bulk phase polarity, show minimal interfacial water structuring, the cationic species exhibits strong bulk water signals from the surface potential. Meanwhile, the polymer brushes themselves restructure in water differently independent of charge, impacting the functional groups that are presented to the aqueous phase. Nonpolar and cationic species for instance undergo a change in alkyl group orientations to accommodate hydrating water molecules, whereas the zwitterionic polymer becomes completely disordered in water. Overall, the structure-based behavior trends presented herein have implications in antifouling applications and responsive material interfaces.

biointerface↗