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At least 73 records · Page 4

Fully generalized, turbulent trace impurity transport with Gkeyll and Flan in the DIII-D far-SOL

The Monte Carlo trace impurity turbulent transport code Flan is introduced for the first time. Flan follows impurities in a turbulent background plasma from Gkeyll using the Lorentz force to resolve the full particle gyro orbit. Collisions are handled using the Nanbu collision algorithm (Nanbu 1997 Phys. Rev. E 55 4642–52), and ionization/recombination is handled via ADAS coupling. The far-SOL of a generic DIII-D L-mode is simulated with and without the collision model to show how collisions affect radial tungsten transport. Anomalous diffusion coefficient (D r ) and pinch velocity (v p ) profiles are extracted from fits to the results. With collisions, D r and v p are between 0–1.0 m 2 s −1 and −100–100 m s −1 , respectively. Without collisions, D r and v p are between 0–0.3 m 2 s −1 and −50–50 m s −1 , respectively. Exponential fits to the radial W density profiles and experimental data from W deposition along a collector probe are in good agreement, demonstrating Flan as a useful interpretive modeling tool. Additional simulations show that impurity transport away from the wall increases with atomic number, though it is not clear why. Flan has the potential to better interpret existing data and improve reactor scale predictions of core contamination because the underlying physics model is very general and does not rely on arbitrary user-defined transport coefficients.

DIII-D

SHADOW4: the popular ray tracing revived for evolving synchrotron sources in fourth-generation storage rings

We present SHADOW4, a new version of the popular ray tracing code. The SHADOW kernel has been completely rewritten in Python applying modern concepts of software engineering. A new user interface is available in the OASYS ecosystem. The new tool has been designed and implemented preparing the future needs both in computing (cloud computing, AI integration) and in the transit to fourth generation sources and beyond.

Sanchez del Rio, Manuel

Accumulation of trace elements in soil and fauna within a site historically contaminated with coal combustion residues

Legacy contaminants tied to energy production are a worldwide concern. Coal combustion residues (CCRs) contain high concentrations of potentially toxic trace elements such as arsenic (As), mercury (Hg), and selenium (Se), which can persist for decades after initial contamination. Coal combustion residue disposal methods, including aquatic settling basins and landfills, can facilitate environmental exposure through intentional and accidental releases. Wildlife exposed to CCRs can experience numerous deleterious effects, such as on development, reproduction, and survival. In the current study, we quantified and compared concentrations of As, Hg, Se, and strontium (Sr) within soils and target fauna (three vertebrate and three invertebrate taxa) from a CCR-contaminated site and a reference site within the U.S. Department of Energy’s Savannah River Site, South Carolina, United States. Our objectives were to (1) compare current concentrations of tested elements in soil and resident fauna to levels from our reference site, (2) assess natural attenuation of elements in soils by comparing current concentrations to historic levels, and (3) evaluate the biomagnification potential of the elements measured via body burden and trophic position correlations among fauna. Here, element concentrations were higher in contaminated soils than reference soils; however, concentrations in 2022 were unchanged from concentrations measured in 2003, suggesting no natural attenuation of tested elements. Additionally, target fauna had elevated As, Se, and Sr levels in comparison to reference samples. A positive correlation was observed in southern toads between Sr concentrations and trophic position, as assessed by nitrogen stable isotope ratios, suggesting potential for biomagnification of Sr within our study system. Collectively, our results demonstrate that legacy contaminants are still present and bioaccumulate in a diversity of taxa in a CCR-contaminated site that has not received effluents in more than 50 years, suggesting monitoring programs in CCR-contaminated sites should be maintained long term in the absence of remediation.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN

The hierarchical growth of bright central galaxies and intracluster light as traced by the magnitude gap

Using a sample of 2800 galaxy clusters identified in the Dark Energy Survey across the redshift range 0.20 < z < 0.60, we characterize the hierarchical assembly of bright central galaxies (BCGs) and the surrounding intracluster light (ICL). To quantify hierarchical formation we use the stellar mass–halo mass (SMHM) relation, comparing the halo mass, estimated via the mass–richness relation, to the stellar mass within the BCG + ICL system. Moreover, we incorporate the magnitude gap (M14), the difference in brightness between the BCG (measured within 30 kpc) and fourth brightest cluster member galaxy within 0.5 $R_{200,c}$, as a third parameter in this linear relation. The inclusion of M14, which traces BCG hierarchical growth, increases the slope and decreases the intrinsic scatter, highlighting that it is a latent variable within the BCG + ICL SMHM relation. Moreover, the correlation with M14 decreases at large radii. However, the stellar light within the BCG + ICL transition region (30 –80 kpc) most strongly correlates with halo mass and has a statistically significant correlation with M14. Since the transition region and M14 are independent measurements, the transition region may grow due to the BCG’s hierarchical formation. Additionally, as M14 and ICL result from hierarchical growth, we use a stacked sample and find that clusters with large M14 values are characterized by larger ICL and BCG + ICL fractions, which illustrates that the merger processes that build the BCG stellar mass also grow the ICL. Furthermore, this may suggest that M14 combined with the ICL fraction can identify dynamically relaxed clusters.

79 ASTRONOMY AND ASTROPHYSICS

X-ray fluorescence mapping of brain tissue reveals the profound extent of trace element dysregulation in stroke pathophysiology

Abstract The brain is a privileged organ with regard to its trace element composition and maintains a robust barrier system to sequester this specialized environment from the rest of the body and the vascular system. Stroke is caused by loss of adequate blood flow to a region of the brain. Without adequate blood flow ischaemic changes begin almost immediately, triggering an ischaemic cascade, characterized by ion dysregulation, loss of function, oxidative damage, cellular degradation, and breakdown of the barrier that helps maintain this environment. Ion dysregulation is a hallmark of stroke pathophysiology and we observe that most elements in the brain are dysregulated after stroke. X-ray fluorescence-based detection of physiological changes in the neurometallome after stroke reveals profound ion dysregulation within the lesion and surrounding tissue. Not only are most elements significantly dysregulated after stroke, but the level of dysregulation cannot be predicted from a cell-level description of dysregulation. X-ray fluorescence imaging reveals that the stroke lesion retains <25% of essential K+ after stroke, but this element is not concomitantly elevated elsewhere in the organ. Moreover, elements like Na+, Ca2+, and Cl− are vastly elevated above levels available in normal brain tissue (>400%, >200%, and >150%, respectively). We hypothesize that weakening of the blood–brain barrier after stroke allows elements to freely diffuse down their concentration gradient so that the stroke lesion is in equilibrium with blood (and the compartments containing brain interstitial fluid and cerebrospinal fluid). The change observed for the neurometallome likely has consequences for the potential to rescue infarcted tissue, but also presents specific targets for treatment.

Biochemistry & Molecular Biology

Tracing Long-Lived Atomic Coherences Generated via Molecular Conical Intersections

Accessing coherences is key to fully understand and control ultrafast dynamics of complex quantum systems like molecules. Most photochemical processes are mediated by conical intersections, which generate coherences between electronic states in molecules. We show with accurate calculations performed on gas-phase methyl iodide that electronic coherences of spin-orbit-split states persist in atomic iodine after dissociation. Our simulation predicts a maximum magnitude of vibronic coherence in the molecular regime of 0.75% of the initially photoexcited state population. Upon dissociation, one-third of this coherence magnitude is transferred to a long-lived atomic coherence where vibrational decoherence can no longer occur. To trace these dynamics, we propose a tabletop experimental approach—heterodyned attosecond four-wave-mixing spectroscopy. This technique can temporally resolve small electronic coherence magnitudes and reconstruct the full complex coherence function via phase cycling. Hence, heterodyned attosecond four-wave-mixing spectroscopy leads the way to a complete understanding and optimal control of spin-orbit-coupled electronic states in photochemistry.

Chemical Physics

Ray-tracing image simulations of transparent objects with complex shape and inhomogeneous refractive index

Optical images of transparent three-dimensional objects can be different from a replica of the object’s cross section in the image plane, due to refraction at the surface or in the body of the object. Simulations of the object’s image are thus needed for the visualization and validation of physical models. We report ray tracing image simulations that achieved high physical fidelity, reproducing optical behaviors and image features not rendered in previous studies. We replicated brightfield microscopy images of drops with complex shapes, and images of pressure and shock waves traveling inside them. For high physical fidelity, the simulations must replicate the spatial and angular distribution of illumination rays, and both the experiment and the simulation must be designed for accurate optical modeling. The simulations are highly sensitive to the properties of the drops and can be used to diagnose and refine fluid dynamics models. The simulated images can also be optimized to extract multiple 3D properties from experimental images. Compared to specialized single-shot 3D imaging methods, this approach has the advantage that it preserves the experimental simplicity, the high resolution, and the visual interpretability characteristic to basic optical imaging. The techniques introduced here are directly applicable to optical microscopy, so they can be used in other fields, such as microfluidics and biology, to expand the type and the accuracy of three-dimensional information that can be extracted from basic optical images.

Cavitation

Is the trace anomaly at its minimum value at neutron star centers?

While the equation of state (EOS) 𝑃⁡(𝜖) of neutron star (NS) matter has been extensively studied, the EOS-parameter 𝜙 =𝑃/𝜖 or equivalently the dimensionless trace anomaly Δ =1/3 −𝜙, which quantifies the balance between pressure 𝑃 and energy density 𝜖, remains far less explored, especially in NS cores. Its bounds and density profile carry crucial information about the nature of superdense matter. Physically, the EOS-parameter 𝜙 represents the mean stiffness of matter accumulated from the stellar surface up to a given density. Based on the intrinsic structure of the Tolman-Oppenheimer-Volkoff equations, we show that 𝜙 decreases monotonically outward from the NS center, independent of any specific input NS EOS model. Furthermore, observational evidence of a peak in the SSS density profile near the center effectively rules out a valley and a subsequent peak in the radial profile of 𝜙 at similar densities, reinforcing its monotonic decrease. Finally, these model-independent relations impose strong constraints on the near-center behavior of the EOS-parameter 𝜙, particularly demonstrating that the mean stiffness (or equivalently Δ) reaches a local maximum (minimum) at the center.

nuclear astrophysics

Reimagining Disassembly Interfaces With Visualization: Combining Instruction Tracing and Control Flow With DisViz

In applications where efficiency is critical, developers may examine their compiled binaries, seeking to understand how the compiler transformed their source code and what performance implications that transformation may have. This analysis is challenging due to the vast number of disassembled binary instructions and the many-to-many mappings between them and the source code. These problems are exacerbated as source code size increases, giving the compiler more freedom to map and disperse binary instructions across the disassembly space. Interfaces for disassembly typically display instructions as an unstructured listing or sacrifice the order of execution. Here, we design a new visual interface for disassembly code that combines execution order with control flow structure, enabling analysts to both trace through code and identify familiar aspects of the computation. Central to our approach is a novel layout of instructions grouped into basic blocks that displays a looping structure in an intuitive way. We add to this disassembly representation a unique block-based mini-map that leverages our layout and shows context across thousands of disassembly instructions. Finally, we embed our disassembly visualization in a web-based tool, DisViz, which adds dynamic linking with source code across the entire application. DizViz was developed in collaboration with program analysis experts following design study methodology and was validated through evaluation sessions with ten participants from four institutions. Participants successfully completed the evaluation tasks, hypothesized about compiler optimizations, and noted the utility of our new disassembly view. Our evaluation suggests that our new integrated view helps application developers in understanding and navigating disassembly code.

Computer science

Removal of trace gases can both increase and decrease cloud droplet formation

Aerosols consist of liquid or solid particles dispersed in a gas. Aerosol measurements generally rely on drying the particles before quantifying their physicochemical properties. This drying can potentially remove semivolatile compounds from the particles. Here, we show size-resolved cloud condensation nuclei (CCN) measurements quantifying the hygroscopicity parameter in the presence and absence of a denuder. The denuder efficiently removed alkanes and weakly functionalized acids, aldehydes, and alcohols with fewer than 10 carbon atoms from the gas phase. Denuding organic compounds perturbed the CCN-derived hygroscopicity parameter by up to 50%. Denuding either rendered the particles more or less CCN active, and the direction of the effect depended on sample relative humidity and trace gas concentration. The effect was weakest in early spring and strongest in late spring and summer. The measurements demonstrate an unexpectedly strong coupling between the particle and gas phase, influencing CCN activity through either volatilization or surface adsorption, or both.

54 ENVIRONMENTAL SCIENCES

Summer Aerosol and Trace Gas Observations in Houston, Texas Using an Adaptable Mobile Facility

An aerosol container featuring a shared inlet system was deployed to Houston, Texas in July 2022, enabling direct, high-time-resolution in situ measurements of aerosols and trace gases. The internal rack system and floorplan was designed for adaptable modularity to elucidate aerosol physicochemical processes at fine scales. The design allowed for the deployment of a core instrument suite and additional customized research grade instruments. A heterogeneous mixture of aerosols was observed during three regimes: (1) intermittent black carbon (BC) and diurnal variations in aerosol chemical composition, (2) observed particle growth associated with SO 2 , (3) transported supermicron dust. The high variability of observed particles and gases in high time resolution indicated a complex urban area with multiple local and regional sources and processes. Particle growth rates of 7–16 nm/hr were observed for submicron particles during periods when SO 2 was >0.5 ppbv. Two periods of multi-day long-range transport events of dust from the African Sahara were observed in the supermicron and submicron particle modes with total mass concentrations up to 30 μg m −3 . Aerosol scattering angstrom exponents and extinction coefficients (B ext ) increased with humidity as a function of particle composition. The measurements demonstrate collaborative capabilities that can be used to increase observations of aerosol processing, microphysical and optical properties, internal mixing state, and supermicron aerosol that are not parameterized or missing in global Earth energy system models.

54 ENVIRONMENTAL SCIENCES

Tracing the impacts of Mount Pinatubo eruption on regional climate using spatially-varying changepoint detection

Significant events, such as volcanic eruptions, can have global and long-lasting impacts on climate. These global impacts, however, are not uniform across space and time. Understanding how the Mt. Pinatubo eruption affects global and regional climate is of great interest for predicting the impact on climate due to similar events as well as understanding the possible effect of the stratospheric aerosol injections proposed to combat climate change. While many studies illustrated the impact of the Pinatubo eruption on a global scale, studies at a fine regional scale are scarce. Here, we propose a Bayesian spatially-varying changepoint detection and estimation method to trace the impact of Mt. Pinatubo eruption on regional climate. Our approach takes into account the diffusing nature and spatial correlation of the climate changes attributed to the volcanic eruption. We illustrate our method and demonstrate its advantages over an existing changepoint detection method through simulations. Finally, we apply our method to monthly stratospheric aerosol optical depth and surface temperature data from 1985 to 1995 to detect and estimate changepoints following the 1991 Mt. Pinatubo eruption. Our results quantitatively characterize the spatial pattern of the eruption’s impact on regional climate, complementing the previous studies on the global impact of the Pinatubo eruption.

Aerosol optical depth

Total Column Infrared Trace Species in Baltimore Field Campaign Report

The U.S. Department of Energy’s Atmospheric Radiation Measurement (ARM) User Facility Coast-Urban-Rural Atmospheric Gradient Experiment (CoURAGE), including the first ARM Mobile Facility (AMF1), occurred during 2025 at a site in Baltimore, Maryland owned by Morgan State University. Our goal was to supplement the measurements taken by locating a Bruker EM27/SUN spectrometer at the site to make total column measurements of trace gases in the near-infrared. This EM27 location was one of six locations in the Washington, D.C./Maryland region during the summer of 2025, and the network of observations was intended to help us better understand emissions in the region, as well as how emissions interact with meteorology to affect air quality and other atmospheric attributes.

54 ENVIRONMENTAL SCIENCES

Tracing priming effects in palsa peat carbon dynamics using a stable isotope-assisted metabolomics approach

Introduction: Peatlands store up to a third of global soil carbon, and in high latitudes their litter inputs are increasing and changing in composition under climate change. Although litter significantly influences peatland carbon and nutrient dynamics by changing the overall lability of peatland organic matter, the physicochemical mechanisms of this impact—and thus its full scope—remain poorly understood. Methods: We applied multimodal metabolomics (UPLC-HRMS, 1 H NMR) paired with 13 C Stable Isotope-Assisted Metabolomics (SIAM) to track litter carbon and its potential priming effects on both existing soil organic matter and carbon gas emissions. Through this approach, we achieved molecule-specific tracking of carbon transformations at unprecedented detail. Results: Our analysis revealed several key findings about carbon dynamics in palsa peat. Microbes responded rapidly to litter addition, producing a short-term increase in CO 2 emissions, fueled nearly exclusively by transformations of litter carbon. Litter inputs significantly contributed to the organic nitrogen pool through amino acids and peptide derivatives, which served as readily accessible nutrient sources for microbial communities. We traced the fate of plant-derived polyphenols including flavonoids like rutin, finding evidence of their degradation through heterocyclic C-ring fission, while accumulation of some polyphenols suggested their role in limiting overall decomposition. The SIAM approach detected subtle molecular changes indicating minimal and transient priming activity that was undetectable through conventional gas measurements alone. This transient response was characterized by brief microbial stimulation followed by rapid return to baseline metabolism. Pre-existing peat organic matter remained relatively stable; significant priming of its consumption was not observed, nor was its structural alteration. Discussion: This suggests that while litter inputs temporarily increase CO 2 emissions, they don’t sustain long-term acceleration of stored carbon decomposition or substantially decrease peat’s carbon store capacity. Our findings demonstrate how technological advancements in analytical tools can provide a more detailed view of carbon cycling processes in complex soil systems.

54 ENVIRONMENTAL SCIENCES

Gradient Technique Theory: Tracing Magnetic Field and Obtaining Magnetic Field Strength

Abstract The gradient technique is a promising tool with theoretical foundations based on the fundamental properties of MHD turbulence and turbulent reconnection. Its various incarnations use spectroscopic, synchrotron, and intensity data to trace the magnetic field and measure the media magnetization in terms of Alfvén Mach number. We provide an analytical theory of gradient measurements and quantify the effects of averaging gradients along the line of sight and over the plane of the sky. We derive analytical expressions that relate the properties of gradient distribution with the Alfvén Mach number M A . We show that these measurements can be combined with measures of sonic Mach number or line broadening to obtain the magnetic field strength. The corresponding technique has advantages to the Davis–Chandrasekhar–Fermi way of obtaining the magnetic field strength.

79 ASTRONOMY AND ASTROPHYSICS

Tracing the Evolution of the Cool Gas in CGM and IGM Environments through Mg II Absorption from Redshift z = 0.75 to z = 1.65 Using DESI-Y1 Data

We present a measurement of the mean absorption of cool gas traced by Mg II (λλ2796, 2803) around emission line galaxies (ELGs), spanning spatial scales from 20 kpc to 10 Mpc. The measurement is based on crossmatching the positions ELGs at z = 0.75–1.65 and the metal absorption in the spectra of background quasars with data provided by the Year 1 sample of the Dark Energy Spectroscopic Instrument. The ELGs are divided into two redshift intervals: 0.75 < z < 1.0 and 1.0 < z < 1.65. We find that the composite quasar spectra constructed by stacking the ELG-QSO pairs evolve with redshift, with z > 1 having a systematically higher signal of Mg II absorption. Within 1 Mpc, the covering fraction of the cool gas at z > 1 is higher than that of z < 1. The enhancement becomes less apparent especially if the projected distance r p > 1 Mpc. ELGs with higher stellar mass and star formation rate (SFR) yield higher clustering of Mg ii absorbers at z < 1. For z > 1, the covering fractions with different SFRs show little difference. The higher Mg II absorption at higher redshift supports the observations of higher star formation at cosmic noon. Converting the Mg II absorbers to unsaturated Si II , our estimate indicates that the metal abundance of Si II ranges from 0.7 to 1.2 × 10 −6 from z = 0.9 to 1.3. The growth of low-ionization metal abundance strongly suggests a metal-enriched circumgalactic medium and an increased presence of cool gas in the intergalactic medium toward higher redshifts.

circumgalactic medium

Mahakala: A Python-based Modular Ray-tracing and Radiative Transfer Algorithm for Curved Spacetimes

We introduce Mahakala, a Python-based, modular, radiative ray-tracing code for curved spacetimes. We employ Google's JAX framework for accelerated automatic differentiation, which can efficiently compute Christoffel symbols directly from the metric, allowing the user to easily and quickly simulate photon trajectories through non-Kerr spacetimes. JAX also enables Mahakala to run in parallel on both CPUs and GPUs. Mahakala natively uses the Cartesian Kerr–Schild coordinate system, which avoids numerical issues caused by the pole in spherical coordinate systems. We demonstrate Mahakala's capabilities by simulating 1.3 mm wavelength images (the wavelength of Event Horizon Telescope observations) of general relativistic magnetohydrodynamic simulations of low-accretion rate supermassive black holes. The modular nature of Mahakala allows us to quantitatively explore how different regions of the flow influence different image features. We show that most of the emission seen in 1.3 mm images originates close to the black hole and peaks near the photon orbit. We also quantify the relative contribution of the disk, forward jet, and counterjet to 1.3 mm images.

79 ASTRONOMY AND ASTROPHYSICS