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At least 73 records · Page 4

Optical tomography reconstruction algorithm with the finite element method: An optimal approach with regularization tools

Highlights: •New strategies to improve the accuracy of the reconstruction through mesh and finite element parameterization. •Use of gradient filtering through an alternative inner product within the adjoint method. •An integral form of the cost function is used to make the reconstruction compatible with all finite element formulations, continuous and discontinuous. •Gradient-based algorithm with the adjoint method is used for the reconstruction. -- Abstract: Optical tomography is mathematically treated as a non-linear inverse problem where the optical properties of the probed medium are recovered through the minimization of the errors between the experimental measurements and their predictions with a numerical model at the locations of the detectors. According to the ill-posed behavior of the inverse problem, some regularization tools must be performed and the Tikhonov penalization type is the most commonly used in optical tomography applications. This paper introduces an optimized approach for optical tomography reconstruction with the finite element method. An integral form of the cost function is used to take into account the surfaces of the detectors and make the reconstruction compatible with all finite element formulations, continuous and discontinuous. Through a gradient-based algorithm where the adjoint method is used to compute the gradient of the cost function, an alternative inner product is employed for preconditioning the reconstruction algorithm. Moreover, appropriate re-parameterization of the optical properties is performed. These regularization strategies are compared with the classical Tikhonov penalization one. It is shown that both the re-parameterization and the use of the Sobolev cost function gradient are efficient for solving such an ill-posed inverse problem.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

X-ray tomography of extended objects: a comparison of data acquisition approaches

The penetration power of x-rays allows one to image large objects while their short wavelength allows for high spatial resolution. As a result, with synchrotron sources one has the potential to obtain tomographic images of centimeter-sized specimens with sub-micrometer pixel sizes. However, limitations on beam and detector size make it difficult to acquire such data of this sort in a single take, necessitating strategies for combining data from multiple regions. One strategy is to acquire a tiled set of local tomograms by rotating the specimen around each of the local tomogram center positions. Another strategy, sinogram oriented acquisition, involves the collection of projections at multiple offset positions from the rotation axis followed by data merging and reconstruction. We have carried out a simulation study to compare these two approaches in terms of radiation dose applied to the specimen, and reconstructed image quality. Local tomography acquisition involves an easier data alignment problem, and immediate viewing of subregions before the entire dataset has been acquired. Sinogram oriented acquisition involves a more difficult data assembly and alignment procedure, and it is more sensitive to accumulative registration error. Furthermore, sinogram oriented acquisition is more dose-efficient, it involves fewer translation motions of the object, and it avoids certain artifacts of local tomography.

47 OTHER INSTRUMENTATION↗

Balancing unevenly distributed data in seismic tomography: a global adjoint tomography example

SUMMARY The uneven distribution of earthquakes and stations in seismic tomography leads to slower convergence of nonlinear inversions and spatial bias in inversion results. Including dense regional arrays, such as USArray or Hi-Net, in global tomography causes severe convergence and spatial bias problems, against which conventional pre-conditioning schemes are ineffective. To save computational cost and reduce model bias, we propose a new strategy based on a geographical weighting of sources and receivers. Unlike approaches based on ray density or the Voronoi tessellation, this method scales to large full-waveform inversion problems and avoids instabilities at the edges of dense receiver or source clusters. We validate our strategy using a 2-D global waveform inversion test and show that the new weighting scheme leads to a nearly twofold reduction in model error and much faster convergence relative to a conventionally pre-conditioned inversion. We implement this geographical weighting strategy for global adjoint tomography.

Ruan, Youyi↗

3D and 4D magnetic susceptibility tomography based on complex MR images

Magnetic susceptibility is the physical property for T2*-weighted magnetic resonance imaging (T2*MRI). The invention relates to methods for reconstructing an internal distribution (3D map) of magnetic susceptibility values, .chi. (x,y,z), of an object, from 3D T2*MRI phase images, by using Computed Inverse Magnetic Resonance Imaging (CIMRI) tomography. The CIMRI technique solves the inverse problem of the 3D convolution by executing a 3D Total Variation (TV) regularized iterative convolution scheme, using a split Bregman iteration algorithm. The reconstruction of .chi. (x,y,z) can be designed for low-pass, band-pass, and high-pass features by using a convolution kernel that is modified from the standard dipole kernel. Multiple reconstructions can be implemented in parallel, and averaging the reconstructions can suppress noise. 4D dynamic magnetic susceptibility tomography can be implemented by reconstructing a 3D susceptibility volume from a 3D phase volume by performing 3D CIMRI magnetic susceptibility tomography at each snapshot time.

47 OTHER INSTRUMENTATION↗

Process tomography for unitary quantum channels

We study the number of measurements required for quantum process tomography under prior information, such as a promise that the unknown channel is unitary. We introduce the notion of an interactive observable and we show that any unitary channel acting on a d-level quantum system can be uniquely identified among all other channels (unitary or otherwise) with only O(d{sup 2}) interactive observables, as opposed to the O(d{sup 4}) required for tomography of arbitrary channels. This result generalizes to the problem of identifying channels with at most q Kraus operators, and slight improvements can be obtained if we wish to identify such a channel only among unital channels or among other channels with q Kraus operators. These results are proven via explicit construction of large subspaces of Hermitian matrices with various conditions on rank, eigenvalues, and partial trace. Our constructions are built upon various forms of totally nonsingular matrices.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Minimum Fisher regularization of image reconstruction for infrared imaging bolometer on HL-2A

An infrared imaging bolometer diagnostic has been developed recently for the HL-2A tokamak to measure the temporal and spatial distribution of plasma radiation. The three-dimensional tomography, reduced to a two-dimensional problem by the assumption of plasma radiation toroidal symmetry, has been performed. A three-dimensional geometry matrix is calculated with the one-dimensional pencil beam approximation. The solid angles viewed by the detector elements are taken into account in defining the chord brightness. And the local plasma emission is obtained by inverting the measured brightness with the minimum Fisher regularization method. A typical HL-2A plasma radiation model was chosen to optimize a regularization parameter on the criterion of generalized cross validation. Finally, this method was applied to HL-2A experiments, demonstrating the plasma radiated power density distribution in limiter and divertor discharges.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Cardiac C-arm computed tomography using a 3D + time ROI reconstruction method with spatial and temporal regularization

Purpose: Reconstruction of the beating heart in 3D + time in the catheter laboratory using only the available C-arm system would improve diagnosis, guidance, device sizing, and outcome control for intracardiac interventions, e.g., electrophysiology, valvular disease treatment, structural or congenital heart disease. To obtain such a reconstruction, the patient's electrocardiogram (ECG) must be recorded during the acquisition and used in the reconstruction. In this paper, the authors present a 4D reconstruction method aiming to reconstruct the heart from a single sweep 10 s acquisition. Methods: The authors introduce the 4D RecOnstructiOn using Spatial and TEmporal Regularization (short 4D ROOSTER) method, which reconstructs all cardiac phases at once, as a 3D + time volume. The algorithm alternates between a reconstruction step based on conjugate gradient and four regularization steps: enforcing positivity, averaging along time outside a motion mask that contains the heart and vessels, 3D spatial total variation minimization, and 1D temporal total variation minimization. Results: 4D ROOSTER recovers the different temporal representations of a moving Shepp and Logan phantom, and outperforms both ECG-gated simultaneous algebraic reconstruction technique and prior image constrained compressed sensing on a clinical case. It generates 3D + time reconstructions with sharp edges which can be used, for example, to estimate the patient's left ventricular ejection fraction. Conclusions: 4D ROOSTER can be applied for human cardiac C-arm CT, and potentially in other dynamic tomography areas. It can easily be adapted to other problems as regularization is decoupled from projection and back projection.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Design of smart 3D-digital X-ray microtomographic scanners for non-destructive testing of materials and components of electronic devices with a multilayered structure

The article studies the operating procedures of an X-ray microtomographic scanner and the module of reconstruction and analysis 3D-image of a test sample in particular. An algorithm for 3D-image reconstruction based on image shadow projections and mathematical methods of the processing are described. Chapter 1 describes the basic principles of X-ray tomography and general procedures of the device developed. Chapters 2 and 3 are devoted to the problem of resources saving by the system during the X-ray tomography procedure, which is achieved by preprocessing of the initial shadow projections. Preprocessing includes background noise removing from the images, which reduces the amount of shadow projections in general and increases the efficiency of the group shadow projections compression. Chapter 4 covers general procedures of defect search, which is based on vector analysis principles. In conclusion, the main applications of X-ray tomography are presented.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

X-ray microtomographic scanners

The article studies the operating procedures of an X-ray microtomographic scanner and the module of reconstruction and analysis 3D-image of a test sample in particular. An algorithm for 3D-image reconstruction based on image shadow projections and mathematical methods of the processing are described. Chapter 1 describes the basic principles of X-ray tomography and general procedures of the device developed. Chapters 2 and 3 are devoted to the problem of resources saving by the system during the X-ray tomography procedure, which is achieved by preprocessing of the initial shadow projections. Preprocessing includes background noise removing from the images, which reduces the amount of shadow projections in general and increases the efficiency of the group shadow projections compression. In conclusion, the main applications of X-ray tomography are presented.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Investigation of core-annular flow in an industrial scale circulating fluidized bed riser with electrical capacitance volume tomography (ECVT)

There is a paucity of riser data for industrial scale units, particularly with regard to the solids fraction. This is especially true for detailed spatially distributed values. To alleviate this problem, NETL installed a 0.445 m tall electrical capacitance volume tomography (ECVT) sensor 9.66 m from the gas distributor of its industrial size (15.45 m high and 0.3 m diameter) circulating fluidized bed (CFB) cold model. A series of tests were conducted to investigate the gas-solid flow behavior using high density polyethylene (PPE) solids. Static electricity was successfully minimized using Larostat and humidification. Time averaged radial solid fractions profiles are presented and discussed. The time and spatially averaged solid fractions measured by the ECVT agree well with estimates from the pressure drop. The annular thickness was measured and found to increase with increases in the solids flow rate and decrease with increases in the gas velocity. Comparisons of the annular thickness and solids fraction as determined from the ECVT unit were compared to existing correlations. In conclusion, the average error ranged from 13% to 275% which is not surprising since the literature correlations were developed from data on much smaller units and for significantly different particles.

42 ENGINEERING↗

Image features for misalignment correction in medical flat-detector CT

Purpose: Misalignment artifacts are a serious problem in medical flat-detector computed tomography. Generally, the geometrical parameters, which are essential for reconstruction, are provided by preceding calibration routines. These procedures are time consuming and the later use of stored parameters is sensitive toward external impacts or patient movement. The method of choice in a clinical environment would be a markerless online-calibration procedure that allows flexible scan trajectories and simultaneously corrects misalignment and motion artifacts during the reconstruction process. Therefore, different image features were evaluated according to their capability of quantifying misalignment. Methods: Projections of the FORBILD head and thorax phantoms were simulated. Additionally, acquisitions of a head phantom and patient data were used for evaluation. For the reconstruction different sources and magnitudes of misalignment were introduced in the geometry description. The resulting volumes were analyzed by entropy (based on the gray-level histogram), total variation, Gabor filter texture features, Haralick co-occurrence features, and Tamura texture features. The feature results were compared to the back-projection mismatch of the disturbed geometry. Results: The evaluations demonstrate the ability of several well-established image features to classify misalignment. The authors elaborated the particular suitability of the gray-level histogram-based entropy on identifying misalignment artifacts, after applying an appropriate window level (bone window). Conclusions: Some of the proposed feature extraction algorithms show a strong correlation with the misalignment level. Especially, entropy-based methods showed very good correspondence, with the best of these being the type that uses the gray-level histogram for calculation. This makes it a suitable image feature for online-calibration.

60 APPLIED LIFE SCIENCES↗

Open Source Visualization and Analysis Platform for 3D Reconstructions of Materials by Transmission Electron Microscopy

Three-dimensional characterization of materials at the nano- and meso-scale has become possible with transmission and scanning transmission electron microscopes (S/TEM). Its importance has extended to a wide class of nanomaterials such as hydrogen fuel cells, solar cells, industrial catalysts, new battery materials and semiconductor devices, as well as spanning high-tech industry, universities, and national labs. While capable instrumentation is abundant, this rapidly expanding demand for high-resolution tomography is bottlenecked by software that is instead tailored for lower-dose, biological applications and not optimized for higher-resolution materials applications. Existing tomography fails to utilize the chemical information provided by S/TEM spectrometers. To address this problem, this project delivered a scalable, fully functional, freely-distributable, open Source materials tomography package with a modern user interface that enables automated acquisition, alignment, and real-time reconstruction of raw tomography data, and provides advanced segmentation, three-dimensional chemical visualization and analysis optimized for materials applications. It has established an extendable framework capable of automation for high-throughput for the tomography of materials from data acquisition to visualization. Phase I and II delivered a full-featured, cross-platform, clean and integrated application for S/TEM materials tomography. It can read projection data from the microscope, with graphical tools for alignment of data, tomographic reconstruction, segmentation, and visualization of the reconstructed 3D volume. The entire pipeline can be saved to an XML state file, enabling fully reproducible data processing and analysis with a full Python environment for the development of custom algorithms, processing, and analysis requirements. Phase IIB extended the application to provide real-time tomographic reconstruction, "live updates" as data is processed, analysis of big data, and multi-channel tomography. Here, quantitative assessment of nanomaterials can occur as data is being recorded on a 3D visualization platform that accommodates additional information from multiple channels. We provide unmatched high-throughput tomography, where the complete tomographic pipeline from measurement to 3D visualization can occur rapidly. The project was extended to offer capabilities for micro-CT, X-ray, neutron, focused ion beam, atomic electron tomography and atom probe tomography. With over 600 transmission electron microscopes worldwide and approximately 50 coming online each year, the demand and impact of an open-source tomography tool is large. Significant opportunities exist in high-tech industry, universities, and national labs to enable or enhance three-dimensional imaging at the nanoscale and bring automated high-throughput approaches that will accelerate progress in materials characterization and metrology. The project supports a service based business model by enabling lab-specific acquisition and processing customization and integration-support and development that will be provided into Phase III and beyond.

36 MATERIALS SCIENCE↗

Low background high efficiency radiocesium detection system based on positron emission tomography technology

After the 2011 nuclear power plant accident at Fukushima, radiocesium contamination in food became a serious concern in Japan. However, low background and high efficiency radiocesium detectors are expensive and huge, including semiconductor germanium detectors. To solve this problem, we developed a radiocesium detector by employing positron emission tomography (PET) technology. Because {sup 134}Cs emits two gamma photons (795 and 605 keV) within 5 ps, they can selectively be measured with coincidence. Such major environmental gamma photons as {sup 40}K (1.46 MeV) are single photon emitters and a coincidence measurement reduces the detection limit of radiocesium detectors. We arranged eight sets of Bi{sub 4}Ge{sub 3}O{sub 12} (BGO) scintillation detectors in double rings (four for each ring) and measured the coincidence between these detectors using PET data acquisition system. A 50 × 50 × 30 mm BGO was optically coupled to a 2 in. square photomultiplier tube (PMT). By measuring the coincidence, we eliminated most single gamma photons from the energy distribution and only detected those from {sup 134}Cs at an average efficiency of 12%. The minimum detectable concentration of the system for the 100 s acquisition time is less than half of the food monitor requirements in Japan (25 Bq/kg). These results show that the developed radiocesium detector based on PET technology is promising to detect low level radiocesium.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Quantifying the distribution of paste-void spacing of hardened cement paste using X-ray computed tomography

The distribution of paste-void spacing in cement-based materials is an important feature related to the freeze-thaw durability of these materials, but its reliable estimation remains an unresolved problem. Herein, we evaluate the capability of X-ray computed tomography (CT) for reliable quantification of the distribution of paste-void spacing. Using X-ray CT images of three mortar specimens having different air-entrainment characteristics, we calculate the distributions of paste-void spacing of the specimens by applying previously suggested methods for deriving the exact spacing of air-void systems. This methodology is assessed by comparing the 95th percentile of the cumulative distribution function of the paste-void spacing with spacing factors computed by applying the linear-traverse method to 3D air-void system and reconstructing equivalent air-void distribution in 3D. Results show that the distributions of equivalent void diameter and paste-void spacing follow lognormal and normal distributions, respectively, and the ratios between the 95th percentile paste-void spacing value and the spacing factors reside within the ranges reported by previous numerical studies. This experimental finding indicates that the distribution of paste-void spacing quantified using X-ray CT has the potential to be the basis for a statistical assessment of the freeze-thaw durability of cement-based materials. - Highlights: Black-Right-Pointing-Pointer The paste-void spacing in 3D can be quantified by X-ray CT. Black-Right-Pointing-Pointer The distribution of the paste-void spacing follows normal distribution. Black-Right-Pointing-Pointer The spacing factor and 95th percentile of CDF of paste-void spacing are correlated.

36 MATERIALS SCIENCE↗

TomoPyUI : a user-friendly tool for rapid tomography alignment and reconstruction

The management and processing of synchrotron and neutron computed tomography data can be a complex, labor-intensive and unstructured process. Users devote substantial time to both manually processing their data ( i.e. organizing data/metadata, applying image filters etc. ) and waiting for the computation of iterative alignment and reconstruction algorithms to finish. In this work, we present a solution to these problems: TomoPyUI , a user interface for the well known tomography data processing package TomoPy . This highly visual Python software package guides the user through the tomography processing pipeline from data import, preprocessing, alignment and finally to 3D volume reconstruction. The TomoPyUI systematic intermediate data and metadata storage system improves organization, and the inspection and manipulation tools (built within the application) help to avoid interrupted workflows. Notably, TomoPyUI operates entirely within a Jupyter environment. Herein, we provide a summary of these key features of TomoPyUI , along with an overview of the tomography processing pipeline, a discussion of the landscape of existing tomography processing software and the purpose of TomoPyUI , and a demonstration of its capabilities for real tomography data collected at SSRL beamline 6-2c.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Inverse transport calculations in optical imaging with subspace optimization algorithms

Inverse boundary value problems for the radiative transport equation play an important role in optics-based medical imaging techniques such as diffuse optical tomography (DOT) and fluorescence optical tomography (FOT). Despite the rapid progress in the mathematical theory and numerical computation of these inverse problems in recent years, developing robust and efficient reconstruction algorithms remains a challenging task and an active research topic. We propose here a robust reconstruction method that is based on subspace minimization techniques. The method splits the unknown transport solution (or a functional of it) into low-frequency and high-frequency components, and uses singular value decomposition to analytically recover part of low-frequency information. Minimization is then applied to recover part of the high-frequency components of the unknowns. We present some numerical simulations with synthetic data to demonstrate the performance of the proposed algorithm.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Bilevel optimization, deep learning and fractional Laplacian regularization with applications in tomography

Here we consider a generalized bilevel optimization framework for solving inverse problems. We introduce fractional Laplacian as a regularizer to improve the reconstruction quality, and compare it with the total variation regularization. We emphasize that the key advantage of using fractional Laplacian as a regularizer is that it leads to a linear operator, as opposed to the total variation regularization which results in a nonlinear degenerate operator. Inspired by residual neural networks, to learn the optimal strength of regularization and the exponent of fractional Laplacian, we develop a dedicated bilevel optimization neural network with a variable depth for a general regularized inverse problem. We illustrate how to incorporate various regularizer choices into our proposed network. As an example, we consider tomographic reconstruction as a model problem and show an improvement in reconstruction quality, especially for limited data, via fractional Laplacian regularization. We successfully learn the regularization strength and the fractional exponent via our proposed bilevel optimization neural network. We observe that the fractional Laplacian regularization outperforms total variation regularization. This is specially encouraging, and important, in the case of limited and noisy data.

97 MATHEMATICS AND COMPUTING↗

Toward Water Volume Fraction Calculation in Multiphase Flows Using Electrical Capacitance Tomography Sensors

Real-time monitoring of water volume fraction in multiphase flows is an important problem for a number of industrial applications. The water phase in the multiphase flows may correspond to either the dispersed phase or the continuous phase. In the past, several lowcost and nonintrusive techniques based on the electrical capacitance tomography (ECT) has been developed to image and monitor in real-time multiphase flows containing water. Furthermore, such monitoring becomes increasingly challenging for high salinity levels, and no reliable ECTbased method is presently available which could work for obtaining water volume fraction in multiphase flows for all water salinity levels. In this paper, we propose a new approach based on the Hanai’s formula for complex dielectric constant and taking advantage of the Maxwell- Wagner-Sillars effect to obtain, to a good approximation, water volume fractions in multiphase flows containing water as either dispersed or continuous phase.

02 PETROLEUM↗