Response to ''Comment on 'Bridging the gap between IMRT and VMAT: Dense angularly sampled and sparse intensity modulated radiation therapy''' [Med. Phys. 38, 4912-4919 (2011)]
No abstract prepared.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
SEARCH · Engineering Papers
Results for “sparse sampling”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Sparse Data Acquisition on Emerging Memory Architectures
Emerging memory devices, such as resistive crossbars, have the capacity to store large amounts of data in a single array. Acquiring the data stored in large-capacity crossbars in a sequential fashion can become a bottleneck. We present practical methods, based on sparse sampling, to quickly acquire sparse data stored on emerging memory devices that support the basic summation kernel, reducing the acquisition time from linear to sub-linear. Experimental results show that at least an order of magnitude improvement in acquisition time can be achieved when the data is sparse.
97 MATHEMATICS AND COMPUTING↗
AGES: THE AGN AND GALAXY EVOLUTION SURVEY
The AGN and Galaxy Evolution Survey (AGES) is a redshift survey covering, in its standard fields, 7.7 deg{sup 2} of the Booetes field of the NOAO Deep Wide-Field Survey. The final sample consists of 23,745 redshifts. There are well-defined galaxy samples in 10 bands (the B{sub W} , R, I, J, K, IRAC 3.6, 4.5, 5.8, and 8.0 {mu}m, and MIPS 24 {mu}m bands) to a limiting magnitude of I < 20 mag for spectroscopy. For these galaxies, we obtained 18,163 redshifts from a sample of 35,200 galaxies, where random sparse sampling was used to define statistically complete sub-samples in all 10 photometric bands. The median galaxy redshift is 0.31, and 90% of the redshifts are in the range 0.085 < z < 0.66. Active galactic nuclei (AGNs) were selected as radio, X-ray, IRAC mid-IR, and MIPS 24 {mu}m sources to fainter limiting magnitudes (I < 22.5 mag for point sources). Redshifts were obtained for 4764 quasars and galaxies with AGN signatures, with 2926, 1718, 605, 119, and 13 above redshifts of 0.5, 1, 2, 3, and 4, respectively. We detail all the AGES selection procedures and present the complete spectroscopic redshift catalogs and spectral energy distribution decompositions. Photometric redshift estimates are provided for all sources in the AGES samples.
79 ASTRONOMY AND ASTROPHYSICS↗
High-Fidelity Heavy-Duty Vehicle Modeling Using Sparse Telematics Data
Heavy-duty commercial vehicles consume a significant amount of energy due to their large size and mass, directly leading to vehicle operators prioritizing energy efficiency to reduce operational costs and comply with environmental regulations. One tool that can be used for the evaluation of energy efficiency in heavy-duty vehicles is the evaluation of energy efficiency using vehicle modeling and simulation. Simulation provides a path for energy efficiency improvement by allowing rapid experimentation of different vehicle characteristics on fuel consumption without the need for costly physical prototyping. The research presented in this paper focuses on using real-world, sparsely sampled telematics data from a large fleet of heavy-duty vehicles to create high-fidelity models for simulation. Samples in the telematics dataset are collected sporadically, resulting in sparse data with an infrequent and irregular sampling rate. Captured in the dataset was geospatial information, time series measurements, and vehicle-specific metadata from a subset of 96 vehicles from varied geographic regions across North America. A series of custom algorithms was developed to process vehicle data and derive both vehicle model input parameters and representative drive cycles. Derived models provide a basis on which to simulate real-world vehicles and iterate on vehicle aerodynamics, auxiliary power loads, transmission shift schedules, and other parameters to achieve reduced fuel consumption and increase energy efficiency. Notably, these models were developed without the use of expensive field data collection, using only data collected through fleet telematics. Processed representative drive cycles are used to validate the fuel economy of derived models. The models developed through this research allow for more representative vehicle simulations with increased flexibility regarding vehicle-to-vehicle variations.
ADVANCED PROPULSION SYSTEMS↗
Validation of spatiodemographic estimates produced through data fusion of small area census records and household microdata
Techniques such as Iterative Proportional Fitting have been previously suggested as a means to generate new data with the demographic granularity of individual surveys and the spatial granularity of small area tabulations of censuses and surveys. This article explores internal and external validation approaches for synthetic, small area, household- and individual-level microdata using a case study for Bangladesh. Using data from the Bangladesh Census 2011 and the Demographic and Health Survey, we produce estimates of infant mortality rate and other household attributes for small areas using a variation of an iterative proportional fitting method called P-MEDM. We conduct an internal validation to determine: whether the model accurately recreates the spatial variation of the input data, how each of the variables performed overall, and how the estimates compare to the published population totals. We conduct an external validation by comparing the estimates with indicators from the 2009 Multiple Indicator Cluster Survey (MICS) for Bangladesh to benchmark how well the estimates compared to a known dataset which was not used in the original model. The results indicate that the estimation process is viable for regions that are better represented in the microdata sample, but also revealed the possibility of strong overfitting in sparsely sampled sub-populations.
42 ENGINEERING↗
Random On-Board Pixel Sampling (ROPS) X-Ray Camera
Recent advances in compressed sensing theory and algorithms offer new possibilities for high-speed X-ray camera design. In many CMOS cameras, each pixel has an independent on-board circuit that includes an amplifier, noise rejection, signal shaper, an analog-to-digital converter (ADC), and optional in-pixel storage. When X-ray images are sparse, i.e., when one of the following cases is true: (a.) The number of pixels with true X-ray hits is much smaller than the total number of pixels; (b.) The X-ray information is redundant; or (c.) Some prior knowledge about the X-ray images exists, sparse sampling may be allowed. Here we first illustrate the feasibility of random on-board pixel sampling (ROPS) using an existing set of X-ray images, followed by a discussion about signal to noise as a function of pixel size. Next, we describe a possible circuit architecture to achieve random pixel access and in-pixel storage. The combination of a multilayer architecture, sparse on-chip sampling, and computational image techniques, is expected to facilitate the development and applications of high-speed X-ray camera technology.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
A compressed sensing X-ray camera with a multilayer architecture
Recent advances in compressed sensing theory and algorithms offer new possibilities for high-speed X-ray camera design. In many CMOS cameras, each pixel has an independent on-board circuit that includes an amplifier, noise rejection, signal shaper, an analog-to-digital converter (ADC), and optional in-pixel storage. When X-ray images are sparse, i.e., when one of the following cases is true: (a.) The number of pixels with true X-ray hits is much smaller than the total number of pixels; (b.) The X-ray information is redundant; or (c.) Some prior knowledge about the X-ray images exists, sparse sampling may be allowed. In this work, we first illustrate the feasibility of random on-board pixel sampling (ROPS) using an existing set of X-ray images, followed by a discussion about signal to noise as a function of pixel size. Next, we describe a possible circuit architecture to achieve random pixel access and in-pixel storage. The combination of a multilayer architecture, sparse on-chip sampling, and computational image techniques, is expected to facilitate the development and applications of high-speed X-ray camera technology.
47 OTHER INSTRUMENTATION↗
Multifidelity methods for uncertainty quantification of a nonlocal model for phase changes in materials
This study is devoted to the construction of a multifidelity Monte Carlo (MFMC) method for the uncertainty quantification of a nonlocal, non-mass-conserving Cahn-Hilliard model for phase transitions with an obstacle potential. Here, we are interested in estimating the expected value of an output of interest (OoI) that depends on the solution of the nonlocal Cahn-Hilliard model. As opposed to its local counterpart, the nonlocal model captures sharp interfaces without the need for significant mesh refinement. However, the computational cost of the nonlocal Cahn-Hilliard model is higher than that of its local counterpart with similar mesh refinement, inhibiting its use for outer-loop applications such as uncertainty quantification. The MFMC method augments the desired high-fidelity, high-cost OoI with a set of lower-fidelity, lower-cost OoIs to alleviate the computational burden associated with nonlocality. Most of the computational budget is allocated to sampling the cheap surrogate models to achieve speedup, whereas the high-fidelity model is sparsely sampled to maintain accuracy. For the non-mass-conserving nonlocal Cahn-Hilliard model, the use of the MFMC method results in, for a given computational budget, about an order of magnitude reduction in the mean-squared error of the expected value of the OoI relative to that of the Monte Carlo method.
97 MATHEMATICS AND COMPUTING↗
Joint surface reconstruction and 4D deformation estimation from sparse data and prior knowledge for marker-less Respiratory motion tracking
Purpose: The intraprocedural tracking of respiratory motion has the potential to substantially improve image-guided diagnosis and interventions. The authors have developed a sparse-to-dense registration approach that is capable of recovering the patient's external 3D body surface and estimating a 4D (3D + time) surface motion field from sparse sampling data and patient-specific prior shape knowledge.Methods: The system utilizes an emerging marker-less and laser-based active triangulation (AT) sensor that delivers sparse but highly accurate 3D measurements in real-time. These sparse position measurements are registered with a dense reference surface extracted from planning data. Thereby a dense displacement field is recovered, which describes the spatio-temporal 4D deformation of the complete patient body surface, depending on the type and state of respiration. It yields both a reconstruction of the instantaneous patient shape and a high-dimensional respiratory surrogate for respiratory motion tracking. The method is validated on a 4D CT respiration phantom and evaluated on both real data from an AT prototype and synthetic data sampled from dense surface scans acquired with a structured-light scanner.Results: In the experiments, the authors estimated surface motion fields with the proposed algorithm on 256 datasets from 16 subjects and in different respiration states, achieving a mean surface reconstruction accuracy of ±0.23 mm with respect to ground truth data—down from a mean initial surface mismatch of 5.66 mm. The 95th percentile of the local residual mesh-to-mesh distance after registration did not exceed 1.17 mm for any subject. On average, the total runtime of our proof of concept CPU implementation is 2.3 s per frame, outperforming related work substantially.Conclusions: In external beam radiation therapy, the approach holds potential for patient monitoring during treatment using the reconstructed surface, and for motion-compensated dose delivery using the estimated 4D surface motion field in combination with external-internal correlation models.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
Development of an MEMS ultrasonic microphone array system and its application to compressed wavefield imaging of concrete
Abstract Although contactless ultrasonic wavefield imaging shows potential for effective nondestructive inspection of various engineering materials, it has been rarely applied to concrete materials owing to technical challenges including low signal-to-noise ratio (SNR) caused by inherent heterogeneity of concrete. This paper presents development of a multi-channel MEMS ultrasonic microphone array system and its application to compressed wavefield imaging of concrete materials. The developed multi-channel MEMS ultrasonic microphone array system contains eight MEMS ultrasonic microphone elements and a signal conditioning circuit that enables measurements of ultrasonic signals with high SNR. A compressed sensing approach, based on the multiple measurement vector (MMV) concept, is applied to reconstruct a full dense ultrasonic wavefield data from sparsely sampled ultrasonic wavefield data. Experiments are carried out on a laboratory concrete sample to verify the performance of the developed MEMS microphone array system and proposed compressed sensing approach and then large-scale concrete samples to demonstrate practical application. The experimental results demonstrate that the developed MEMS microphone array system provides high-quality (SNR > 20 dB) ultrasonic data collected from concrete elements; furthermore, the proposed compressed sensing approach provides accurate reconstruction of dense wavefield data, as determined by peak signal-to-noise ratio (PSNR), from sparsely measured wavefield data with compression ratios up to 85% and PSNR above 25 dB in data collected form realistic large-scale concrete samples. By combining the MEMS array system and compressed sensing approach, the total ultrasonic data acquisition time needed to produce dense wavefield data can be significantly reduced.
Instruments & Instrumentation↗
Reduced electron exposure for energy-dispersive spectroscopy using dynamic sampling
Analytical electron microscopy and spectroscopy of biological specimens, polymers, and other beam sensitive materials has been a challenging area due to irradiation damage. There is a pressing need to develop novel imaging and spectroscopic imaging methods that will minimize such sample damage as well as reduce the data acquisition time. The latter is useful for high-throughput analysis of materials structure and chemistry. Here, in this work, we present a novel machine learning based method for dynamic sparse sampling of EDS data using a scanning electron microscope. Our method, based on the supervised learning approach for dynamic sampling algorithm and neural networks based classification of EDS data, allows a dramatic reduction in the total sampling of up to 90%, while maintaining the fidelity of the reconstructed elemental maps and spectroscopic data. In conclusion, we believe this approach will enable imaging and elemental mapping of materials that would otherwise be inaccessible to these analysis techniques.
36 MATERIALS SCIENCE↗
Stellar kinematics of dwarf galaxies from multi-epoch spectroscopy: application to Triangulum II
ABSTRACT We present new MMT/Hectochelle spectroscopic measurements for 257 stars observed along the line of sight to the ultrafaint dwarf galaxy Triangulum II (Tri II). Combining results from previous Keck/DEIMOS spectroscopy, we obtain a sample that includes 16 likely members of Tri II, with up to 10 independent redshift measurements per star. To this multi-epoch kinematic data set, we apply methodology that we develop in order to infer binary orbital parameters from sparsely sampled radial velocity curves with as few as two epochs. For a previously identified (spatially unresolved) binary system in Tri II, we infer an orbital solution with period $296.0_{-3.3}^{+3.8} \rm ~ d$, semimajor axis $1.12^{+0.41}_{-0.24}\rm ~au$, and systemic velocity $-380.0 \pm 1.7 \rm ~km ~s^{-1}$ that we then use in the analysis of Tri II’s internal kinematics. Despite this improvement in the modelling of binary star systems, the current data remain insufficient to resolve the velocity dispersion of Tri II. We instead find a 95 per cent confidence upper limit of $\sigma _{v} \lesssim 3.4 \rm ~km~s^{-1}$.
Buttry, Rachel (ORCID:0000000155017609)↗
Budding yeasts in the subphylum Saccharomycotina Genome sequencing and assembly
Eukaryotic life depends on the functional elements encoded by both the nuclear genome and organellar genomes, such as those contained within the mitochondria. The content, size, and structure of the mitochondrial genome varies across organisms with potentially large implications for phenotypic variance and resulting evolutionary trajectories. Among yeasts in the subphylum Saccharomycotina, extensive differences have been observed in various species relative to the model yeast Saccharomyces cerevisiae, but mitochondrial genome sampling across many groups has been scarce, even as hundreds of nuclear genomes have become available. By extracting mitochondrial reads from existing short-read genome sequence datasets, we have greatly expanded both the number of available genomes and the coverage across sparsely sampled clades. Comparison of 353 yeast mitochondrial genomes revealed that, while size and GC content were fairly consistent across species, those in the genera Metschnikowia and Saccharomyces trended larger, while several species in the order Saccharomycetales exhibited lower GC content. Extreme examples for both size and GC content were scattered throughout the subphylum. All mitochondrial genomes shared a core set of protein-coding genes for Complexes III, IV, and V, but they varied in the presence or absence of mitochondrially-encoded canonical Complex I genes. We traced the loss of Complex I genes to a major event in the ancestor of the orders Saccharomycetales and Saccharomycodales, but we also observed several independent losses in the orders Phaffomycetales, Pichiales, and Dipodascales. In contrast to prior hypotheses based on smaller-scale datasets, comparison of evolutionary rates in protein-coding genes showed no bias towards elevated rates among aerobically fermenting (Crabtree/Warburg-positive) yeasts. Mitochondrial introns were widely distributed, but highly enriched in some groups. The majority of mitochondrial introns were poorly conserved within groups, but several were shared within groups, between groups, and even across taxonomic orders, which is consistent with horizontal gene transfer, likely involving homing endonucleases acting as selfish elements. As the number of available fungal nuclear genomes continues to expand, the methods described here to retrieve mitochondrial genome sequences from these datasets will prove invaluable to ensuring that studies of fungal mitochondrial genomes keep pace with their nuclear counterparts.
diversity↗
Hierarchical Inference of the Lensing Convergence from Photometric Catalogs with Bayesian Graph Neural Networks
Abstract We present a Bayesian graph neural network (BGNN) that can estimate the weak lensing convergence ( κ ) from photometric measurements of galaxies along a given line of sight (LOS). The method is of particular interest in strong gravitational time-delay cosmography (TDC), where characterizing the “external convergence” ( κ ext ) from the lens environment and LOS is necessary for precise Hubble constant ( H 0 ) inference. Starting from a large-scale simulation with a κ resolution of ∼1′, we introduce fluctuations on galaxy–galaxy lensing scales of ∼1″ and extract random sight lines to train our BGNN. We then evaluate the model on test sets with varying degrees of overlap with the training distribution. For each test set of 1000 sight lines, the BGNN infers the individual κ posteriors, which we combine in a hierarchical Bayesian model to yield constraints on the hyperparameters governing the population. For a test field well sampled by the training set, the BGNN recovers the population mean of κ precisely and without bias (within the 2 σ credible interval), resulting in a contribution to the H 0 error budget well under 1%. In the tails of the training set with sparse samples, the BGNN, which can ingest all available information about each sight line, extracts a stronger κ signal compared to a simplified version of the traditional method based on matching galaxy number counts, which is limited by sample variance. Our hierarchical inference pipeline using BGNNs promises to improve the κ ext characterization for precision TDC. The code is available as a public Python package, Node to Joy ⏬ .
79 ASTRONOMY AND ASTROPHYSICS↗
Uncovering multiscale structure-property correlations via active learning in scanning tunneling microscopy
Atomic arrangements and local sub-structures fundamentally influence emergent material functionalities. These structures are conventionally probed using spatially resolved studies and the property correlations are deciphered by a researcher based on sequential explorations, thereby limiting the efficiency and scope. Here we demonstrate a multi-scale Bayesian deep-learning based framework that automatically correlates material structure with its electronic properties using scanning tunneling microscopy (STM) measurements in real-time. Its predictions are used to autonomously direct exploration toward regions of the sample that optimize a given material property. This method is deployed on a low-temperature ultra-high vacuum STM to understand the structure-property relationship in a europium-based semimetal, EuZn 2 As 2 , a promising candidate relevant to magnetism-driven topological phenomena. The framework employs a sparse-sampling approach to efficiently construct the scalar-property space using minimal measurements, about 1–10% of the data required in standard hyperspectral methods. Moreover, we formulate the problem hierarchically across length scales, implementing autonomous workflow to locate mesoscopic and atomic structures that correspond to a target material property. This framework offers the choice to design scalar-property from the spectroscopic data to steer sample exploration. Our findings reveal correlations of the electronic properties unique to surface terminations, local defect density, and point defects.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Projected Multi-Agent Consensus Equilibrium (PMACE) With Application to Ptychography
Multi-Agent Consensus Equilibrium (MACE) formulates an inverse imaging problem as a balance among multiple update agents such as data-fitting terms and denoisers. However, each such agent operates on a separate copy of the full image, leading to redundant memory use and slow convergence when each agent affects only a small subset of the full image. In this article, we extend MACE to Projected Multi-Agent Consensus Equilibrium (PMACE), in which each agent updates only a projected component of the full image, thus greatly reducing memory use for some applications. We describe PMACE in terms of an equilibrium problem and an equivalent fixed-point problem and show that in most cases the PMACE equilibrium is not the solution of an optimization problem. To demonstrate the value of PMACE, we apply it to the problem of ptychography, in which a sample is reconstructed from the diffraction patterns resulting from coherent X-ray illumination at multiple overlapping spots. In our PMACE formulation, each spot corresponds to a separate data-fitting agent, with the final solution found as an equilibrium among all the agents. In conclusion, our results demonstrate that the PMACE reconstruction algorithm generates more accurate reconstructions at a lower computational cost than existing ptychography algorithms when the spots are sparsely sampled.
97 MATHEMATICS AND COMPUTING↗
Adaptive enhanced sampling by force-biasing using neural networks
A machine learning assisted method is presented for molecular simulation of systems with rugged free energy landscapes. The method is general and can be combined with other advanced sampling techniques. In the particular implementation proposed here, it is illustrated in the context of an adaptive biasing force approach where, rather than relying on discrete force estimates, one can resort to a self-regularizing artificial neural network to generate continuous, estimated generalized forces. By doing so, the proposed approach addresses several shortcomings common to adaptive biasing force and other algorithms. Specifically, the neural network enables smooth estimates of generalized forces in sparsely sampled regions, force estimates in previously unexplored regions, and continuous force estimates with which to bias the simulation, as opposed to biases generated at specific points of a discrete grid. The usefulness of the method is illustrated with three different examples, chosen to highlight the wide range of applicability of the underlying concepts. In all three cases, the new method is found to enhance considerably the underlying traditional adaptive biasing force approach. Furthermore, the method is also found to provide improvements over previous implementations of neural network assisted algorithms.
97 MATHEMATICS AND COMPUTING↗
High-resolution modeling of indoor radon exposure with uncertainty quantification in Utah
Indoor radon accounts for 37% of population-level exposure to ionizing radiation in the United States. However, radon metrics are typically reported at coarse spatial scales, potentially obscuring meaningful local variation. We developed a high-resolution modeling framework to estimate indoor radon concentrations across Utah while explicitly quantifying predictive uncertainty. A total of 19,497 residential radon measurements collected between 2006 and 2017 were combined with environmental and housing characteristics and analyzed using a geospatial neural network that accommodates spatial dependence and nonlinear associations. Predictions were generated on a uniform hexagonal grid at 0.73 km2 resolution (H3 level 8). Out-of-sample predictions aggregated to the H3 level 8 grid showed good agreement with observed concentrations (Pearson r=0.64), while household-level predictions exhibited more moderate agreement (r=0.45). The model produced well-calibrated uncertainty estimates, with 24.1% of held-out observations exceeding the predicted 75th-percentile threshold. Maps of predicted radon concentrations and the probability of exceeding the U.S. EPA action level of 148 Bq/m3 (4 pCi/L) revealed substantial fine-scale spatial heterogeneity that was not apparent in conventional coarse-resolution summaries, with greater local variability observed in densely monitored urban counties than in sparsely sampled regions. High-resolution radon models that explicitly quantify uncertainty provide a useful framework for characterizing the spatial distribution of indoor radon and identifying areas of elevated exceedance risk. These findings highlight the value of fine-scale monitoring data and uncertainty-aware modeling approaches for radon exposure assessment, environmental risk characterization, and radon-related health research.
Wu, Yunhan [ORNL] (ORCID:0000000178842994)↗