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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics (Blodgett, CA)

This dataset contains data on daily soil temperature, moisture and flux, and soil carbon stock and root biomass across a soil profile down to 100 cm depth at Blodgett Forest Research Station, CA, USA. These data were generated to determine if modeling of an experimental soil warming of 4C showed increased soil CO2 emissions and changes in bulk soil carbon stocks with depth consistent with field observations, as part of the study: Riley et al. (2025) Experimental Soil Warming Impacts Soil Moisture and Plant Water Stress and Thereby Ecosystem Carbon Dynamics in Journal of Advances in Modeling Earth Systems. This research was performed within the framework of the TES Belowground Biogeochemistry SFA project, in particular association with a 1 m-deep experimental soil heating experiment at the University of California Blodgett Forest Research Station, California (120 ° 39′40′′W; 38 ° 54′43′′N). Continuous data were collected at the plot level, and bulk soil carbon and root biomass were sampled once a year from each plot from 0-100 cm, in 10 cm intervals. Measurements relevant to the current study include soil temperature and soil volumetric water content measured continuously at multiple depths in the top meter; fine root biomass and SOC stocks measured from annual soil cores. Soil flux was continuously monitored using a LI-8100 Automated CO2 Flux System in conjunction with the LI-8150 Multiplexer (Licor, Nebraska, USA). Soil flux was determined using SoilFluxPro software, with flux values showing an R² fit of less than 0.9 being excluded from the analysis. Data were collected from each paired plot (1-3): one control (C) and one heated (H).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Manipulative experiments demonstrate how long-term soil moisture changes alter controls of plant water use

Tree transpiration depends on biotic and abiotic factors that might change in the future, including precipitation and soil moisture status. Although short-term sap flux responses to soil moisture and evaporative demand have been the subject of attention before, the relative sensitivity of sap flux to these two factors under long-term changes in soil moisture conditions has rarely been determined experimentally. We tested how long-term artificial change in soil moisture affects the sensitivity of tree-level sap flux to daily atmospheric vapor pressure deficit (VPD) and soil moisture variations, and the generality of these effects across forest types and environments using four manipulative sites in mature forests. Exposure to relatively long-term (two to six years) soil moisture reduction decreases tree sap flux sensitivity to daily VPD and relative extractable water (REW) variations, leading to lower sap flux even under high soil moisture and optimal VPD. Inversely, trees subjected to long-term irrigation showed a significant increase in their sensitivity to daily VPD and REW, but only at the most water-limited site. The ratio between the relative change in soil moisture manipulation and the relative change in sap flux sensitivity to VPD and REW variations was similar across sites suggesting common adjustment mechanisms to long-term soil moisture status across environments for evergreen tree species. Overall, our results show that long-term changes in soil water availability, and subsequent adjustments to these novel conditions, could play a critical and increasingly important role in controlling forest water use in the future.

acclimation↗
DOE OSTI2020

Assessing the sensitivity and repeatability of permanganate oxidizable carbon as a soil health metric: An interlab comparison across soils

Soil organic matter is central to the soil health framework. Therefore, reliable indicators of Soil organic matter is central to the soil health framework. Therefore, reliable indicators of changes in soil organic matter are essential to inform land management decisions. Permanganate oxidizable carbon (PDXC), an emerging soil health indicator, has shown promise for being sensitive to soil management. However, strict standardization is required for widespread implementation in research and commercial contexts. Here, we used 36 soils-three from each of the 12 USDA soil orders-to determine the effects of sieve size and soil mass of analysis on PDXC results. Using replicated measurements across 12 labs in the US and the EU (n = 7951 samples), we quantified the relative importance of 1) variation between labs, 2) variation within labs, 3) effect soil mass, and 4) effect of soil sieve size on the repeatability of PDXC. We found a wide range of overall variability in PDXC values across labs (0.03 to 171.8%; mean = 13.4%), and much of this variability was attributable to within-lab variation (median = 6.5%) independently of soil mass or sieve size. Greater soil mass (2.5 g) decreased absolute PDXC values by a mean of 177 mg kg -1 soil and decreased analytical variability by 6.5%. For soils with organic carbon (SOC) >10%, greater soil mass (2.5 g) resulted in more frequent PDXC values above the limit of detection whereas the lower soil mass (0.75 g) resulted in PDXC values below the limit of detection for SOC contents <5%. A finer sieve size increased absolute values of PDXC by 124 mg kg -1 while decreasing the analytical variability by 1.8%. In general, soils with greater SOC contents had lower analytical variability. These results point to potential standardizations of the PDXC protocol that can decrease the variability of the metric. We recommend that the PDXC protocol be standardized to use 2.5 g for soils <10% SOC. Sieve size was a relatively small contributor to analytical variability and therefore we recommend that this decision be tailored to the study purpose. Tradeoffs associated with these standardizations can be mitigated, ultimately providing guidance on how to standardize PDXC for routine analysis.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Thermal Adaptation of Enzyme‐Mediated Processes Reduces Simulated Soil CO2 Fluxes Upon Soil Warming

Abstract Understanding factors influencing carbon effluxes from soils to the atmosphere is important in a world experiencing climatic change. Two important uncertainties related to soil organic carbon (SOC) stock responses to a changing climate are (a) whether soil microbial communities acclimate or adapt to changes in soil temperature and (b) how to represent this process in SOC models. To further explore these issues, we included thermal adaptation of enzyme‐mediated processes in a mechanistic SOC model (ReSOM) using the macromolecular rate theory. Thermal adaptation is defined here to encompass all potential responses of soil microbes and microbial communities following a change in temperature. To assess the effects of thermal adaptation of enzyme‐mediated processes on simulated SOC losses, ReSOM was applied to data collected from a 13‐year soil warming experiment. Results show that a model omitting thermal adaptation of enzyme‐mediated processes substantially overestimates observed CO 2 effluxes during the initial years of soil warming. The bias against observed CO 2 effluxes was lower for models including thermal adaptation of enzyme‐mediated processes. In addition, for a simulated linear 3°C soil warming over 100 years, models including thermal adaptation of enzyme‐mediated processes simulated SOC losses of a factor of three smaller than models omitting this process. As thermal adaptation of microbial community characteristics is generally not included in models simulating feedback between the soil, biosphere and atmosphere, we encourage future studies to assess the potential impact that microbial adaptation has on soil carbon – climate feedback representations in models. Plain Language Summary A major uncertainty in projecting how much soil organic carbon (SOC) will be converted to CO 2 as a consequence of climate change is related to how soil microbes may adapt to increasing soil temperatures. While this “microbial thermal adaptation” has been shown to occur in short‐term lab incubation experiments, its effect on SOC cycling on a decadal timescale is not clear. To address this knowledge gap, a mechanistic SOC model was used to simulate data collected from a 13‐year soil warming experiment, to assess how microbial thermal adaptation affects predicted SOC losses upon soil warming. The model results show that incorporating microbial thermal adaptation into the model led to reduced CO 2 effluxes from the soil to the atmosphere compared to the common approach of omitting this mechanism. Our results imply that projected SOC losses for the decades to come may be reduced when this mechanism is incorporated in land models. We therefore advocate for more research on the mechanisms controlling microbial thermal adaptation, and how to implement this mechanism in SOC models. Key Points A crucial aspect of soil organic carbon (SOC) models is the representation of soil microbes Predicted soil CO 2 fluxes upon soil warming are reduced when accounting for microbial thermal adaptation On a centennial time scale, this thermal adaptation results in up to a factor of three lower predicted SOC loss

Van de Broek, Marijn↗
DOE OSTI2021

Microbial Community Shifts Reflect Losses of Native Soil Carbon with Pyrogenic and Fresh Organic Matter Additions and Are Greatest in Low-Carbon Soils

ABSTRACT Soil organic carbon (SOC) plays an important role in regulating global climate change, carbon and nutrient cycling in soils, and soil moisture. Organic matter (OM) additions to soils can affect the rate at which SOC is mineralized by microbes, with potentially important effects on SOC stocks. Understanding how pyrogenic organic matter (PyOM) affects the cycling of native SOC (nSOC) and the soil microbes responsible for these effects is important for fire-affected ecosystems as well as for biochar-amended systems. We used an incubation trial with five different soils from National Ecological Observatory Network sites across the United States and 13 C-labeled 350°C corn stover PyOM and fresh corn stover OM to trace nSOC-derived CO 2 emissions with and without PyOM and OM amendments. We used high-throughput sequencing of rRNA genes to characterize bacterial, archaeal, and fungal communities and their responses to PyOM and OM in soils that were previously stored at −80°C. We found that the effects of amendments on nSOC-derived CO 2 reflected the unamended soil C status, where relative increases in C mineralization were greatest in low-C soils. OM additions produced much greater effects on nSOC-CO 2 emissions than PyOM additions. Furthermore, the magnitude of the microbial community composition change mirrored the magnitude of increases in nSOC-CO 2 , indicating that a specific subset of microbes was likely responsible for the observed changes in nSOC mineralization. However, PyOM responders differed across soils and did not necessarily reflect a common “charosphere.” Overall, this study suggests that soils that already have low SOC may be particularly vulnerable to short-term increases in SOC loss with OM or PyOM additions. IMPORTANCE Soil organic matter (SOM) has an important role in global climate change, carbon and nutrient cycling in soils, and soil moisture dynamics. Understanding the processes that affect SOM stocks is important for managing these functions. Recently, understanding how fire-affected organic matter (or “pyrogenic” organic matter [PyOM]) affects existing SOM stocks has become increasingly important, due to both changing fire regimes and interest in “biochar,” pyrogenic organic matter that is produced intentionally for carbon management or as an agricultural soil amendment. We found that soils with less SOM were more prone to increased losses with PyOM (and fresh organic matter) additions and that soil microbial communities changed more in soils that also had greater SOM losses with PyOM additions. This suggests that soils that already have low SOM content may be particularly vulnerable to short-term increases in SOM loss and that a subset of the soil microbial community is likely responsible for these effects.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

How does uncertainty of soil organic carbon stock affect the calculation of carbon budgets and soil carbon credits for croplands in the U.S. Midwest?

Cropland carbon budget depicts the amount of carbon flowing in and out of agroecosystems and the changes in carbon stocks of soil and living biomass during the same period. Soil carbon credit is the additional change in soil carbon stock under certain farming practices compared with the business-as-usual practices. Accurately calculating cropland carbon budget and soil carbon credit is critical to assessing climate change mitigation potential in agroecosystems. The calculation of cropland carbon budget and soil carbon credit is sensitive to local soil and climatic conditions, especially initial soil organic carbon (SOC) stock, which is determined by both SOC concentration (SOC%) and bulk density (Bulk_Density). SOC stock data are either from soil sampling or gridded public survey data. In agroecosystem models, SOC stock data are a key model input for quantifying cropland carbon budget and soil carbon credit. However, various types and degrees of uncertainties exist in SOC stock datasets, which propagate to the quantification of SOC stock change. In particular, a large discrepancy is found in two widely used SOC stock datasets — Rapid Carbon Assessment dataset (RaCA) and Gridded Soil Survey Geographic Database (gSSURGO) — in the U.S. Midwest, with a relative difference (quantified using Normalized Root Mean Square Error, NRMSE) of 48.0% for 0–30 cm SOC stock between the two datasets. It remains largely unclear how uncertainty in SOC stocks affects the calculation of cropland carbon budget and soil carbon credit. To address this question, we used a well-validated process-based agroecosystem model, ecosys, to assess the impacts of SOC stock uncertainty on carbon budget and soil carbon credit calculation in the U.S. Midwestern corn-soybean rotation systems. Our results reveal the following findings: (1) A sizable discrepancy exists in simulated cropland carbon budget between using gSSURGO and using RaCA for their SOC% and Bulk_Density as model inputs, with a Pearson correlation coefficient (r) of only 0.4 for simulated change of SOC stock (ΔSOC) using these two different soil datasets. (2) Simulated cropland carbon budget components were more sensitive to initial SOC% than to Bulk_Density. For example, the upper and lower quartiles of multi-year averaged ΔSOC were –29.8 and 4.8 gC/m 2 /year for the selected counties respectively, with an uncertainty of 13.7 and 0.7 gC/m 2 /year induced by uncertainties in initial SOC% and Bulk_Density, respectively. (3) Both simulated ΔSOC and its uncertainty were negatively correlated with initial SOC%, whereas ΔSOC was negatively correlated with air temperature, and ΔSOC uncertainty was positively correlated with air temperature. (4) The uncertainty of calculated soil carbon credits was much smaller compared with the uncertainty of calculated absolute carbon budgets assuming the same SOC stock uncertainty level in the inputs. Specifically, in our assessment comparing planting cover crops vs no cover crop, the uncertainty of calculated soil carbon credits induced by initial SOC% uncertainty was less than 4% (relative to the quantified value of the soil carbon credits) for 90% of the cases. Our analysis highlights that high accuracy measurement of SOC% as inputs is needed for the calculation of cropland carbon budgets; however, soil carbon credit quantification is much less sensitive to the initial SOC% inputs, and the current publicly available soil datasets (e.g., gSSURGO) are largely suitable for the calculation of soil

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules

The soil microbiome is an invaluable component of the biosphere and critical for ecosystem functions, including biogeochemical cycling, soil-atmosphere gas exchange, degradation of toxic compounds, and promotion of plant growth and stress resistance/resilience. An improved understanding of the soil microbiome will help with predicting how these processes respond to external perturbations, and with harnessing beneficial aspects of the soil microbiome for agronomic applications such as crop amendments. However, the extensive taxonomic and functional diversity inherent within the soil microbiome hinders efficient analysis of this system. Microbial biodiversity in soils is orders of magnitude greater than other commonly studied systems such as the human gut microbiome (Blum, Zechmeister-Boltenstern, and Keiblinger 2019; Berendsen, Pieterse, and Bakker 2012). Thousands of microbial taxa may be found in a single gram of soil (Roesch et al. 2007), and high rates of gene flow and mutation further promote microbial diversification (Sergaki et al. 2018). Concomitantly, functional diversity in soil is similarly extensive. Soil is a heterogeneous mixture of microenvironments with defined physical and chemical attributes (Bach et al. 2018), within which numerous microbial guilds of distinct life-strategies and metabolic capacities can be found (Perez-Garcia, Lear, and Singhal 2016; H.-S. Song et al. 2014). Furthermore, the soil microbiome harbors a significant fraction of rare and/or quiescent members (Blagodatskaya and Kuzyakov 2013) that exist below the threshold of detection of current technologies. Such rare taxa may make significant contributions to process rates (Shade and Gilbert 2015; Dawson et al. 2017), but their scarcity complicates their identification and analysis. Finally, the vast amounts of information generated through holistic analyses of soil communities represent an intense computational burden (Scholz, Lo, and Chain 2012; Prosser 2015) that precludes assessment of the complete functional and taxonomic diversity contained in this ecosystem.

Naylor, Dan T.↗
NASA NTRS2023

Development of High-Resolution Soil Hydraulic Parameters with Use of Earth Observations for Enhancing Root Zone Soil Moisture Product

Regional quantification of energy and water balance fluxes depends inevitably on the estimation of surface and rootzone soil moisture. The simulation of soil moisture depends on the soil retention characteristics, which are difficult to estimate at a regional scale. Thus, the present study proposes a new method to estimate high-resolution Soil Hydraulic Parameters (SHPs) which in turn help to provide high-resolution (spatial and temporal) rootzone soil moisture (RZSM) products. The study is divided into three phases—(I) involves the estimation of finer surface soil moisture (1 km) from the coarse resolution satellite soil moisture. The algorithm utilizes MODIS 1 km Land Surface Temperature (LST) and 1 km Normalized difference vegetation Index (NDVI) for downscaling 25 km C-band derived soil moisture from AMSR-2 to 1 km surface soil moisture product. At one of the test sites, soil moisture is continuously monitored at 5, 20, and 50 cm depth, while at 44 test sites data were collected randomly for validation. The temporal and spatial correlation for the downscaled product was 70% and 83%, respectively. (II) In the second phase, downscaled soil moisture product is utilized to inversely estimate the SHPs for the van Genuchten model (1980) at 1 km resolution. The numerical experiments were conducted to understand the impact of homogeneous SHPs as compared to the three-layered parameterization of the soil profile. It was seen that the SHPs estimated using the downscaled soil moisture (I-d experiment) performed with similar efficiency as compared to SHPs estimated from the in-situ soil moisture data (I-b experiment) in simulating the soil moisture. The normalized root mean square error (nRMSE) for the two treatments was 0.37 and 0.34, respectively. It was also noted that nRMSE for the treatment with the utilization of default SHPs (I-a) and AMSR-2 soil moisture (I-c) were found to be 0.50 and 0.43, respectively. (III) Finally, the derived SHPs were used to simulate both surface soil moisture and RZSM. The final product, RZSM which is the daily 1 km product also showed a nearly 80% correlation at the test site. The estimated SHPs are seen to improve the mean NSE from 0.10 (I-a experiment) to 0.50 (I-d experiment) for the surface soil moisture simulation. The mean nRMSE for the same was found to improve from 0.50 to 0.31.

soil moisture downscaling↗
DOE OSTI2019

Seasonal changes in soil respiration linked to soil moisture and phosphorus availability along a tropical rainfall gradient

Humid tropical forests contain some of the largest soil carbon (C) stocks on Earth, yet there is uncertainty about how carbon dioxide (CO 2 ) fluxes will respond to climate change in this biome. The magnitude of change in soil respiration over seasonal wetting and drying cycles can provide insight to how CO 2 fluxes might respond to precipitation changes. We measured soil respiration in 15 distinct forests across rainfall and soil fertility gradients in lowland Panama to assess spatial variation in seasonal patterns. We predicted that seasonal changes in soil respiration would be related to soil moisture, and that the ratio of wet to dry season CO 2 fluxes across landscape gradients would be regulated by soil organic C and nutrient availability. We found that soil respiration during the dry season was relatively stable across the rainfall gradient, averaging 4.3 ± 0.3 lmol CO 2 m -2 s -1 . In contrast, wet season respiration varied markedly, ranging among sites from a decline of 19% to an increase of 360% in comparison to dry season values. Soil moisture, air temperature, and rainfall were the best predictors of instantaneous soil respiration (R 2 = 0.18). Meanwhile, ratios of wet to dry season CO 2 fluxes were best predicted by sitescale resin-extractable phosphorus (P; R 2 = 0.48). That is, soil respiration in P-rich sites increased more during the wet season relative to respiration in P-poor sites. Also, sites with Wet:Dry season CO 2 flux ratios\1 were all poor in soil P, defined as resin P concentrations < 2 mg P kg -1 . Although soil organic C was not related to instantaneous soil respiration rates, forest floor biomass accumulation during the dry season was positively correlated with soil respiration during the wet season (R 2 = 0.26), indicating the contribution of microbial decomposition to wet season soil respiration. Altogether, nutrient availability regulated soil respiration responses to increased moisture during the wet season, while low soil moisture uniformly suppressed soil respiration across sites during the dry season. Phosphorus availability might therefore regulate feedbacks to climate change among humid tropical forests.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

How deep is your soil? Quantifying and spatially analyzing understudied deep soil in the United States

Deep soil is largely understudied and important in understanding biogeochemical processes in soil. Here, understudied soil is defined as the difference between soil studied to a known depth and the estimated bedrock depth. To understand more about deep soil, the understudied soil in the US was quantified and spatially analyzed using soil survey data and model estimates of bedrock depth. An equation was derived to find understudied soil using the dataset parameters “max lower depth studied”, “depth to bedrock”, and “likelihood of bedrock in the top 200 cm”. The survey data and bedrock model revealed that soil has been studied to an average depth of 1-2 meters, and the average depth to bedrock is 20 meters. Soil data density in the soil surveys was greatest in the West Coast, Midwest, and areas historically managed for agricultural, while the non-contiguous US and interior West were underrepresented. The soil had been studied deeper than the estimated soil depth in 455 out of 56,889 observation points concentrated in Alaska, California, Texas, Florida, Puerto Rico, and the US Virgin Islands. To understand the diversity and any taxonomic bias of the global soil data available, soil order was compared to US-based National Resource Conservation Service percentages and it was found that Oxisols, Alfisols, Ultisols, Andisols, and Histosols were overrepresented while Gelisols, Aridisols, Vertisols, Entisols, and Spodosols are underrepresented. Soil depth is important in exploring the complexity of biogeochemical processes that take place in soil.

Bedrock↗
DOE OSTI2025

Soil biogeochemical properties and metrics of tree-mycorrhizal dominance for a 25-Ha forest in South Central Indiana, USA.

This data package contains a dataset used in the papers “Seeing the forest for all the trees: Mycorrhizal-associated nutrient economies are modulated by stem density and the synchrony between overstory and understory communities” and “Mycorrhizal associations of tree species influence soil nitrogen dynamics via effects on soil acid–base chemistry”. Four csv files are included along with a dataset. The dataset features chemical soil properties for a single sampling campaign within the 25 Ha Lilly-Dickey Woods Smithsonian Forest Global Earth Observatory (ForestGEO) plot in South Central Indiana, USA (ldw_dat_raw.csv). Also included are separate files focused on pH (pH_data.csv), carbon and nitrogen (CN_data.csv), and nitrification rates (Nitrification_data.csv). These variables are commonly associated with the tree-mycorrhizal dominance of forest stands. In these data subsets, each soil variable was matched to a 10 meter radius neighborhood wherein metrics of tree-mycorrhizal dominance (basal area, stem count, importance value, etc.) were calculated. Models between these soil variables and dominance metrics were used to investigate how different assessments of mycorrhizal associated nutrient economies (MANE) capture these relationships. This research was performed as a part of the Smithsonian ForestGEO project. This data package can be used to explore spatial variability in soil chemistry within a mature hardwood forest, or it can be combined with the included tree data, other fine-scale spatial information, or other tree inventory data for the site to evaluate how soil chemistry varies with tree community composition or edaphic or topographic properties.

Craig, Matthew [ORNL] (ORCID:0000000288907920)↗
DOE OSTI2024

Mycorrhizal associations of temperate forest seedlings mediate rhizodeposition, but not soil carbon storage, under elevated nitrogen availability

Abstract Tree‐mycorrhizal associations are associated with patterns in nitrogen (N) availability and soil organic matter storage; however, we still lack a mechanistic understanding of what tree and fungal traits drive these patterns and how they will respond to global changes in soil N availability. To address this knowledge gap, we investigated how arbuscular mycorrhizal (AM)‐ and ectomycorrhizal (EcM)‐associated seedlings alter rhizodeposition in response to increased seedling inorganic N acquisition. We grew four species each of EcM and AM seedlings from forests of the eastern United States in a continuously 13 C‐labeled atmosphere within an environmentally controlled chamber and subjected to three levels of 15 N‐labeled fertilizer. We traced seedling 15 N uptake from, and 13 C‐labeled inputs (net rhizodeposition) into, root‐excluded or ‐included soil over a 5‐month growing season. N uptake by seedlings was positively related to rhizodeposition for EcM‐ but not AM‐associated seedlings in root‐included soils. Despite this contrast in rhizodeposition, there was no difference in soil C storage between mycorrhizal types over the course of the experiment. Instead root‐inclusive soils lost C, while root‐exclusive soils gained C. Our findings suggest that mycorrhizal associations mediate tree belowground C investment in response to inorganic N availability, but these differences do not affect C storage. Continued soil warming and N deposition under global change will increase soil inorganic N availability and our seedling results indicate this could lead to greater belowground C investment by EcM‐associated trees. This potential for less efficient N uptake by EcM‐trees could contribute to AM‐tree success and a shift toward more AM‐dominated temperate forests.

Fitch, Amelia A.↗
NASA NTRS2007

Using Remotely-Sensed Estimates of Soil Moisture to Infer Soil Texture and Hydraulic Properties across a Semi-arid Watershed

Near-surface soil moisture is a critical component of land surface energy and water balance studies encompassing a wide range of disciplines. However, the processes of infiltration, runoff, and evapotranspiration in the vadose zone of the soil are not easy to quantify or predict because of the difficulty in accurately representing soil texture and hydraulic properties in land surface models. This study approaches the problem of parameterizing soils from a unique perspective based on components originally developed for operational estimation of soil moisture for mobility assessments. Estimates of near-surface soil moisture derived from passive (L-band) microwave remote sensing were acquired on six dates during the Monsoon '90 experiment in southeastern Arizona, and used to calibrate hydraulic properties in an offline land surface model and infer information on the soil conditions of the region. Specifically, a robust parameter estimation tool (PEST) was used to calibrate the Noah land surface model and run at very high spatial resolution across the Walnut Gulch Experimental Watershed. Errors in simulated versus observed soil moisture were minimized by adjusting the soil texture, which in turn controls the hydraulic properties through the use of pedotransfer functions. By estimating a continuous range of widely applicable soil properties such as sand, silt, and clay percentages rather than applying rigid soil texture classes, lookup tables, or large parameter sets as in previous studies, the physical accuracy and consistency of the resulting soils could then be assessed. In addition, the sensitivity of this calibration method to the number and timing of microwave retrievals is determined in relation to the temporal patterns in precipitation and soil drying. The resultant soil properties were applied to an extended time period demonstrating the improvement in simulated soil moisture over that using default or county-level soil parameters. The methodology is also applied to an independent case at Walnut Gulch using a new soil moisture product from active (C-band) radar imagery with much lower spatial and temporal resolution. Overall, results demonstrate the potential to gain physically meaningful soils information using simple parameter estimation with few but appropriately timed remote sensing retrievals.

Santanello, Joseph A.↗
DOE OSTI2021

Perennial grass bioenergy cropping systems: Impacts on soil fauna and implications for soil carbon accrual

ABSTRACT Perennial grass energy crop production is necessary for the successful and sustainable expansion of bioenergy in North America. Numerous environmental advantages are associated with perennial grass cropping systems, including their potential to promote soil carbon accrual. Despite growing research interest in the abiotic and biotic factors driving soil carbon cycling within perennial grass cropping systems, soil fauna remain a critical yet largely unexplored component of these ecosystems. By regulating microbial activity and organic matter decomposition dynamics, soil fauna influence soil carbon stability with potentially significant implications for soil carbon accrual. We begin by reviewing the diverse, predominantly indirect effects of soil fauna on soil carbon dynamics in the context of perennial grass cropping systems. Since the impacts of perennial grass energy crop production on soil fauna will mediate their potential contributions to soil carbon accrual, we then discuss how perennial grass energy crop traits, diversity, and management influence soil fauna community structure and activity. We assert that continued research into the interactions of soil fauna, microbes, and organic matter will be important for advancing our understanding of soil carbon dynamics in perennial grass cropping systems. Furthermore, explicit consideration of soil faunal effects on soil carbon can improve our ability to predict changes in soil carbon following perennial grass cropping system establishment. We conclude by addressing the major knowledge gaps that should be prioritized to better understand and model the complex connections between perennial grass bioenergy systems, soil fauna, and carbon accrual.

sustainability↗
DOE OSTI2024

Soil properties and root characteristics across four lowland Panamanian forests from 0 - 1 m soil depths

Objectives:Fine roots significantly influence ecosystem-scale cycling of nutrients, carbon (C), and water, yet there is limited understanding of how fine root traits vary across and within tropical forests, some of Earth's most C-rich ecosystems. The biomass of fine roots can impact soil carbon storage, as root mortality is a primary source of new carbon to soils. A positive relationship has been observed between fine root biomass and soil carbon stocks in Panama (Cusack et al 2018). Beyond biomass, root characteristics like specific root length (SRL) could also influence soil carbon, as roots with higher SRL are less dense and thinner, potentially decomposing more easily or promoting soil aggregation. Understanding the effects of root morphology and tissue quality on soil carbon storage and with soil properties in general can improve predictions of landscape-scale carbon patterns. We aggregated new data of root biomass, morphology and nutrient content at 0-10 cm, 10-20 cm, 20-50 cm and 50-100 cm depth increments across four distinct lowland Panamanian forests and paired with already published datasets (Cusack et al 2018; Cusack and Turner 2020) of soil chemistry from the same sites and soil depths to explore relationship between soil carbon stocks and root characteristics.Datasets included:The datasets provided include .csv and .xlsx files for fine root characteristics and soil chemistry from four different forests across 0-10 cm, 10-20 cm, 20-50 cm, and 50-100 cm depth increments. Root characteristics include live fine root biomass, dead fine root biomass, coarse root biomass, specific root length, root diameter, root tissue density, specific root area, root %N, root %C, and root C/N ratio. Soil chemistry data includes total carbon (TC), dissolved organic carbon (DOC), bulk density, total phosphorus (TP), available phosphorus (AEM Pi), and various Mehlich-extractable elements such as aluminum, calcium, iron, potassium, manganese, phosphorus, and zinc. Nitrogen content measures include ammonium, nitrate, total dissolved nitrogen (TDN), dissolved inorganic nitrogen (DIN), and dissolved organic nitrogen (DON). The dataset also includes total exchangeable bases (TEB) and effective cation exchange capacity (ECEC) in both centimoles of charge per kilogram and micromoles of charge per gram. The soil chemistry data was obtained from Cusack et al (2018) and Cusack and Turner (2020) and paired with root characteristics data for the same depth increments and sites. Additionally, a .kml file is provided with coordinates for all 32 plots included in the study across four forests (n = 8 plots per site). Root data was averaged across these 8 plots per site and soil data was collected in one pit in each site. This dataset serves as baseline data before a throughfall exclusion experiment, Panama Rainforest Changes with Experimental Drying (PARCHED), was implemented. No special software is needed to open these files.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Soil microclimates influence annual carbon loss via heterotrophic soil respiration in maize and switchgrass bioenergy cropping systems

Heterotrophic soil respiration (R H ) is the main pathway of carbon (C) loss from litter and soil organic matter, and thus R H partially determines ecosystem C storage. Because R H is sensitive to soil temperature and moisture, aboveground factors that influence soil microclimate, such as plant structure and residue management, may in turn affect belowground C loss via R H , but this relationship has not been quantified. Here, e examined multiyear soil microclimate differences to 1-m depth, measured seasonal trends of R H , and parameterized crop-specific microclimate-RH models to quantify the effect of soil microclimate differences on annual R H in temperate no-till maize and switchgrass bioenergy cropping systems. Summertime soil temperatures were typically warmer in maize compared to switchgrass, likely resulting from lower leaf area index (LAI) in maize. In contrast, winter soil temperatures were usually warmer in switchgrass than maize, due in part to more consistent snow retention within the switchgrass litter stubble. Daily soil temperature ranges were less extreme in the perennial switchgrass system compared to the annual no-till maize system. Soil moisture near the soil surface was usually lower in maize than switchgrass, but the opposite was true below about 50 cm. R H showed strong seasonal trends, with warmer and drier soil conditions generally leading to higher R H in both crops. Modeled scenarios indicated that the differences in crop-specific soil microclimates accounted for 4 to 17% of the annual R H flux, with the dominant soil microclimate effects on R H occurring during the summer. So, the soil microclimate serves as a strong coupling between aboveground properties and belowground C loss via R H in temperate agroecosystems. Agricultural management practices such as planting date, plant density, and residue management could be targeted to promote soil microclimates that reduce R H , thereby reducing gaseous belowground C losses and potentially enhancing ecosystem C storage.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Kinetic and temperature sensitivity properties of soil exoenzymes through the soil profile down to one-meter depth at a temperate coniferous forest (Blodgett, CA)

This dataset contains data on kinetic and temperature sensitivity parameters of the exoenzymes β-glucosidase (BG), leucine/leucyl aminopeptidase (LAP) and acid phosphatase (AP) across a soil profile down to 90 cm depth at Blodgett forest, CA, USA. These data were generated to determine if kinetic and thermal properties of microbial exoenzymes involved in organic matter decomposition varied with soil depth, following variation in soil properties and microbial communities, as part of the study: Alves et al. (2021). Kinetic Properties of Microbial Exoenzymes Vary with Soil Depth but Have Similar Temperature Sensitivities Through the Soil Profile. Frontiers in Microbiology 12:3618. https://doi.org/10.3389/fmicb.2021.735282. This research was performed within the framework of the TES Belowground Biogeochemistry SFA project, in particular association with a long-term field warming experiment of the whole soil profile at Blodgett forest. Samples for this work were collected from locations representative of the field experimental plots. Potential enzyme activity rates were measured using laboratory fluorometric assays with soils collected at 0-10, 10-20, 30-40, 50-60, 60-70 and 80-90 cm deep in biological triplicates (i.e., three soil cores collected at different representative locations). Assays with each soil were conducted over a gradient of eight substrate concentrations per enzyme, and incubated at 4, 10, 16, 25, 35 or 50°C. Enzyme Michaelis-Menten kinetics were modeled over the eight substrate concentrations at each temperature, and the temperature sensitivity of the kinetic parameters was modeled over the six temperatures using linear Arrhenius/Q10 and non-linear Macromolecular Rate Theory (MMRT) models. The dataset includes the fully processed enzyme activity rate data used to model Michaelis-Menten kinetics, calculated kinetic and temperature sensitivity parameters, and basic soil and microbial biomass chemistry for each sample. All data is provided for each individual biological replicate, and kinetic and temperature sensitivity parameters are also provided as means of the biological replicates. The dataset also includes all raw measurement data and code used to parse, combine and perform the analyses described by Alves et al. (2021). For file descriptions, see the file-level metadata files: “enzymes_dataProcessed_flmd.xlsx” (processed data); “enzymes_dataRaw_flmd.xlsx” (compressed raw data and metadata); and “enzymes_code_flmd.xlsx” (compressed code). The experimental design, list of parameters measured, soil and microbial biomass chemistry data, and means of biological replicates for kinetic and temperature sensitivity parameters are also provided as human-readable tables in file “enzymeTraits_design_results_tables.xlsx”.

54 ENVIRONMENTAL SCIENCES↗