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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Building an open source software ecosystem for cross-disciplinary plasma research and education

Software is crucial to all areas of modern plasma science research. Laboratory plasma physicists use software to interpret plasma diagnostics, analyze experimental results, and glean insights using advanced techniques from data science. Space scientists use software to reduce and understand in situ observations. Numericists use software to simulate the behavior of laboratory, heliospheric, and astrophysical plasmas, and then analyze or visualize the results. Theorists use symbolic manipulation software to perform or check derivations. Cross-disciplinary research and cross-comparisons between experiments, observations, simulations, and theories all require software. Despite our heavy reliance on software, funding agencies have traditionally had few avenues available to support development of general purpose research software infrastructure.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

PyPop: a mature open-source software pipeline for population genomics

Python for Population Genomics (PyPop) is a software package that processes genotype and allele data and performs large-scale population genetic analyses on highly polymorphic multi-locus genotype data. In particular, PyPop tests data conformity to Hardy-Weinberg equilibrium expectations, performs Ewens-Watterson tests for selection, estimates haplotype frequencies, measures linkage disequilibrium, and tests significance. Standardized means of performing these tests is key for contemporary studies of evolutionary biology and population genetics, and these tests are central to genetic studies of disease association as well. Here, we present PyPop 1.0.0, a new major release of the package, which implements new features using the more robust infrastructure of GitHub, and is distributed via the industry-standard Python Package Index. New features include implementation of the asymmetric linkage disequilibrium measures and, of particular interest to the immunogenetics research communities, support for modern nomenclature, including colon-delimited allele names, and improvements to meta-analysis features for aggregating outputs for multiple populations.

59 BASIC BIOLOGICAL SCIENCES↗